RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 BCO2Q9BYV7 579 aa15.11■□□□□ 0.01
UPF3A-204ENST00000475218 TMEM30AQ9NV96 361 aa15.11■□□□□ 0.01
UPF3A-204ENST00000475218 NDRG2Q9UN36 371 aaKnown RBP15.11■□□□□ 0.01
UPF3A-204ENST00000475218 CCL26Q9Y258 94 aa15.11■□□□□ 0.01
UPF3A-204ENST00000475218 TNNI1P19237 187 aa15.11■□□□□ 0.01
UPF3A-204ENST00000475218 CLDN10P78369 228 aa15.11■□□□□ 0.01
UPF3A-204ENST00000475218 KRT85P78386 507 aa15.11■□□□□ 0.01
UPF3A-204ENST00000475218 CMTM8Q8IZV2 173 aa15.11■□□□□ 0.01
UPF3A-204ENST00000475218 NKD2Q969F2 451 aaPredicted RBP15.11■□□□□ 0.01
UPF3A-204ENST00000475218 MYRFLQ96LU7 910 aa15.11■□□□□ 0.01
UPF3A-204ENST00000475218 NELL2Q99435 816 aa15.11■□□□□ 0.01
UPF3A-204ENST00000475218 SYT15Q9BQS2 421 aa15.11■□□□□ 0.01
UPF3A-204ENST00000475218 SPATA6Q9NWH7 488 aaPredicted RBP15.11■□□□□ 0.01
UPF3A-204ENST00000475218 OBP2AQ9NY56 170 aa15.11■□□□□ 0.01
UPF3A-204ENST00000475218 CGNQ9P2M7 1197 aaKnown RBP15.11■□□□□ 0.01
UPF3A-204ENST00000475218 PTPRZ1P23471 2315 aaPredicted RBP15.1■□□□□ 0.01
UPF3A-204ENST00000475218 SLC38A8A6NNN8 435 aa15.1■□□□□ 0.01
UPF3A-204ENST00000475218 LRRIQ3A6PVS8 624 aaPredicted RBP15.1■□□□□ 0.01
UPF3A-204ENST00000475218 CCNE1P24864 410 aa15.1■□□□□ 0.01
UPF3A-204ENST00000475218 PCSK1P29120 753 aa15.1■□□□□ 0.01
UPF3A-204ENST00000475218 MYL6P60660 151 aa15.1■□□□□ 0.01
UPF3A-204ENST00000475218 DLG4P78352 724 aa15.1■□□□□ 0.01
UPF3A-204ENST00000475218 TNK2Q07912 1038 aa15.1■□□□□ 0.01
UPF3A-204ENST00000475218 MTAPQ13126 283 aa15.1■□□□□ 0.01
UPF3A-204ENST00000475218 GAS6Q14393 721 aa15.1■□□□□ 0.01
UPF3A-204ENST00000475218 TDRD10Q5VZ19 366 aaKnown RBP15.1■□□□□ 0.01
UPF3A-204ENST00000475218 TXNDC8Q6A555 127 aa15.1■□□□□ 0.01
UPF3A-204ENST00000475218 SLC9A9Q8IVB4 645 aa15.1■□□□□ 0.01
UPF3A-204ENST00000475218 PARD3BQ8TEW8 1205 aa15.1■□□□□ 0.01
UPF3A-204ENST00000475218 FAM3CQ92520 227 aa15.1■□□□□ 0.01
UPF3A-204ENST00000475218 NELL1Q92832 810 aa15.1■□□□□ 0.01
UPF3A-204ENST00000475218 USP13Q92995 863 aaPredicted RBP15.1■□□□□ 0.01
UPF3A-204ENST00000475218 MYLPFQ96A32 169 aa15.1■□□□□ 0.01
UPF3A-204ENST00000475218 CHFRQ96EP1 664 aa15.1■□□□□ 0.01
UPF3A-204ENST00000475218 TRMT2BQ96GJ1 504 aaKnown RBP15.1■□□□□ 0.01
UPF3A-204ENST00000475218 SLC22A12Q96S37 553 aa15.1■□□□□ 0.01
UPF3A-204ENST00000475218 DPEP3Q9H4B8 488 aa15.1■□□□□ 0.01
UPF3A-204ENST00000475218 GDPD2Q9HCC8 539 aa15.1■□□□□ 0.01
UPF3A-204ENST00000475218 EXOC1Q9NV70 894 aa15.1■□□□□ 0.01
UPF3A-204ENST00000475218 GTSE1Q9NYZ3 720 aa15.1■□□□□ 0.01
UPF3A-204ENST00000475218 CDH9Q9ULB4 789 aa15.1■□□□□ 0.01
UPF3A-204ENST00000475218 EXOC3O60645 756 aa15.09■□□□□ 0.01
UPF3A-204ENST00000475218 VNN1O95497 513 aa15.09■□□□□ 0.01
UPF3A-204ENST00000475218 STAU1O95793 577 aaKnown RBP15.09■□□□□ 0.01
UPF3A-204ENST00000475218 RPN1P04843 607 aaKnown RBP15.09■□□□□ 0.01
UPF3A-204ENST00000475218 PDGFRBP09619 1106 aa15.09■□□□□ 0.01
UPF3A-204ENST00000475218 CSH1P0DML2 217 aa15.09■□□□□ 0.01
UPF3A-204ENST00000475218 CSH2P0DML3 217 aa15.09■□□□□ 0.01
UPF3A-204ENST00000475218 CHRNB1P11230 501 aa15.09■□□□□ 0.01
UPF3A-204ENST00000475218 TDGF1P13385 188 aa15.09■□□□□ 0.01
UPF3A-204ENST00000475218 MAGEA11P43364 429 aa15.09■□□□□ 0.01
UPF3A-204ENST00000475218 CACNA2D1P54289 1103 aa15.09■□□□□ 0.01
UPF3A-204ENST00000475218 MLLT6P55198 1093 aaPredicted RBP15.09■□□□□ 0.01
UPF3A-204ENST00000475218 DPYDQ12882 1025 aa15.09■□□□□ 0.01
UPF3A-204ENST00000475218 ARHGAP15Q53QZ3 475 aa15.09■□□□□ 0.01
UPF3A-204ENST00000475218 C1orf220Q5T0J3 134 aa15.09■□□□□ 0.01
UPF3A-204ENST00000475218 MAB21L3Q8N8X9 362 aa15.09■□□□□ 0.01
UPF3A-204ENST00000475218 TTC8Q8TAM2 541 aa15.09■□□□□ 0.01
UPF3A-204ENST00000475218 FUBP3Q96I24 572 aaKnown RBP eCLIP15.09■□□□□ 0.01
UPF3A-204ENST00000475218 FNBP1Q96RU3 617 aa15.09■□□□□ 0.01
UPF3A-204ENST00000475218 CHRDQ9H2X0 955 aa15.09■□□□□ 0.01
UPF3A-204ENST00000475218 PRMT8Q9NR22 394 aaPredicted RBP15.09■□□□□ 0.01
UPF3A-204ENST00000475218 USP25Q9UHP3 1055 aa15.09■□□□□ 0.01
UPF3A-204ENST00000475218 MAGED2Q9UNF1 606 aaPredicted RBP15.09■□□□□ 0.01
UPF3A-204ENST00000475218 GPR179Q6PRD1 2367 aa15.09■□□□□ 0.01
UPF3A-204ENST00000475218 SPTBN4Q9H254 2564 aa15.09■□□□□ 0.01
UPF3A-204ENST00000475218 OTOGLQ3ZCN5 2332 aa15.09■□□□□ 0.01
UPF3A-204ENST00000475218 ZNF638Q14966 1978 aaKnown RBP15.08■□□□□ 0.01
UPF3A-204ENST00000475218 OTOL1A6NHN0 477 aaPredicted RBP15.08■□□□□ 0.01
UPF3A-204ENST00000475218 MAN2B1O00754 1011 aa15.08■□□□□ 0.01
UPF3A-204ENST00000475218 TACC1O75410 805 aa15.08■□□□□ 0.01
UPF3A-204ENST00000475218 C4BPAP04003 597 aaKnown RBP15.08■□□□□ 0.01
UPF3A-204ENST00000475218 MAGEA9P43362 315 aa15.08■□□□□ 0.01
UPF3A-204ENST00000475218 SYKP43405 635 aa15.08■□□□□ 0.01
UPF3A-204ENST00000475218 USP46P62068 366 aa15.08■□□□□ 0.01
UPF3A-204ENST00000475218 RPL10AP62906 217 aaKnown RBP15.08■□□□□ 0.01
UPF3A-204ENST00000475218 PSMD2Q13200 908 aa15.08■□□□□ 0.01
UPF3A-204ENST00000475218 TSSK4Q6SA08 328 aa15.08■□□□□ 0.01
UPF3A-204ENST00000475218 SPATA2LQ8IUW3 424 aaPredicted RBP15.08■□□□□ 0.01
UPF3A-204ENST00000475218 BPIFB1Q8TDL5 484 aa15.08■□□□□ 0.01
UPF3A-204ENST00000475218 PCED1BQ96HM7 432 aa15.08■□□□□ 0.01
UPF3A-204ENST00000475218 MMS19Q96T76 1030 aa15.08■□□□□ 0.01
UPF3A-204ENST00000475218 FBXO4Q9UKT5 387 aa15.08■□□□□ 0.01
UPF3A-204ENST00000475218 EP300Q09472 2414 aaPredicted RBP15.08■□□□□ 0
UPF3A-204ENST00000475218 A0A1W2PQ27 194 aa15.08■□□□□ 0
UPF3A-204ENST00000475218 A0A1W2PQ64 194 aa15.08■□□□□ 0
UPF3A-204ENST00000475218 A0A1W2PQD8 194 aa15.08■□□□□ 0
UPF3A-204ENST00000475218 BDNFP23560 247 aa15.08■□□□□ 0
UPF3A-204ENST00000475218 CTHP32929 405 aa15.08■□□□□ 0
UPF3A-204ENST00000475218 ZNF528Q3MIS6 628 aa15.08■□□□□ 0
UPF3A-204ENST00000475218 WDR72Q3MJ13 1102 aa15.08■□□□□ 0
UPF3A-204ENST00000475218 MON1AQ86VX9 555 aa15.08■□□□□ 0
UPF3A-204ENST00000475218 SCN4BQ8IWT1 228 aa15.08■□□□□ 0
UPF3A-204ENST00000475218 YAF2Q8IY57 180 aa15.08■□□□□ 0
UPF3A-204ENST00000475218 FSIP1Q8NA03 581 aa15.08■□□□□ 0
UPF3A-204ENST00000475218 GOLGA5Q8TBA6 731 aa15.08■□□□□ 0
UPF3A-204ENST00000475218 MYCBPAPQ8TBZ2 947 aa15.08■□□□□ 0
UPF3A-204ENST00000475218 FAM83CQ9BQN1 747 aa15.08■□□□□ 0
UPF3A-204ENST00000475218 SDCBP2Q9H190 292 aa15.08■□□□□ 0
UPF3A-204ENST00000475218 SMYD3Q9H7B4 428 aa15.08■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms