RNA–Protein interactions for RNA: ENST00000474426.1

UBR3-208, Transcript of ubiquitin protein ligase E3 component n-recognin 3, humanhuman

TSL 1 (best)

Gene UBR3, Length 4,066 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR3-208ENST00000474426 ST6GALNAC1Q9NSC7 600 aaPredicted RBP3.67□□□□□ -1.82
UBR3-208ENST00000474426 POLR3BQ9NW08 1133 aaPredicted RBP3.67□□□□□ -1.82
UBR3-208ENST00000474426 KIF17Q9P2E2 1029 aa3.67□□□□□ -1.82
UBR3-208ENST00000474426 FAM198AQ9UFP1 575 aa3.67□□□□□ -1.82
UBR3-208ENST00000474426 DNAI1Q9UI46 699 aa3.67□□□□□ -1.82
UBR3-208ENST00000474426 PCDHGB4Q9UN71 923 aa3.67□□□□□ -1.82
UBR3-208ENST00000474426 PPIL1Q9Y3C6 166 aa3.67□□□□□ -1.82
UBR3-208ENST00000474426 A0A1W2PPL8 197 aa3.67□□□□□ -1.82
UBR3-208ENST00000474426 MEX3AA1L020 520 aaKnown RBP3.67□□□□□ -1.82
UBR3-208ENST00000474426 SHOXO15266 292 aa3.67□□□□□ -1.82
UBR3-208ENST00000474426 MGRN1O60291 552 aa3.67□□□□□ -1.82
UBR3-208ENST00000474426 MAFKO60675 156 aa3.67□□□□□ -1.82
UBR3-208ENST00000474426 ERAL1O75616 437 aaKnown RBP3.67□□□□□ -1.82
UBR3-208ENST00000474426 SGPL1O95470 568 aa3.67□□□□□ -1.82
UBR3-208ENST00000474426 FYNP06241 537 aa3.67□□□□□ -1.82
UBR3-208ENST00000474426 KRT4P19013 534 aa3.67□□□□□ -1.82
UBR3-208ENST00000474426 ABCB4P21439 1286 aa3.67□□□□□ -1.82
UBR3-208ENST00000474426 KRT9P35527 623 aa3.67□□□□□ -1.82
UBR3-208ENST00000474426 XRCC4Q13426 336 aa3.67□□□□□ -1.82
UBR3-208ENST00000474426 RIPK1Q13546 671 aa3.67□□□□□ -1.82
UBR3-208ENST00000474426 COL9A2Q14055 689 aaPredicted RBP3.67□□□□□ -1.82
UBR3-208ENST00000474426 ACAP2Q15057 778 aa3.67□□□□□ -1.82
UBR3-208ENST00000474426 TAF5Q15542 800 aa3.67□□□□□ -1.82
UBR3-208ENST00000474426 LONRF2Q1L5Z9 754 aa3.67□□□□□ -1.82
UBR3-208ENST00000474426 P3H1Q32P28 736 aa3.67□□□□□ -1.82
UBR3-208ENST00000474426 FIGNQ5HY92 759 aa3.67□□□□□ -1.82
UBR3-208ENST00000474426 CEP85LQ5SZL2 805 aa3.67□□□□□ -1.82
UBR3-208ENST00000474426 CEP85Q6P2H3 762 aa3.67□□□□□ -1.82
UBR3-208ENST00000474426 LRRC6Q86X45 466 aa3.67□□□□□ -1.82
UBR3-208ENST00000474426 PSTKQ8IV42 348 aaKnown RBP3.67□□□□□ -1.82
UBR3-208ENST00000474426 APLFQ8IW19 511 aaPredicted RBP3.67□□□□□ -1.82
UBR3-208ENST00000474426 ZFPM1Q8IX07 1006 aa3.67□□□□□ -1.82
UBR3-208ENST00000474426 HIPK4Q8NE63 616 aa3.67□□□□□ -1.82
UBR3-208ENST00000474426 CELF1Q92879 486 aaKnown RBP3.67□□□□□ -1.82
UBR3-208ENST00000474426 KHSRPQ92945 711 aaKnown RBP eCLIP3.67□□□□□ -1.823e-7■■■□□ 17
UBR3-208ENST00000474426 EXT2Q93063 718 aa3.67□□□□□ -1.82
UBR3-208ENST00000474426 FAM89AQ96GI7 184 aa3.67□□□□□ -1.82
UBR3-208ENST00000474426 TRIM47Q96LD4 638 aa3.67□□□□□ -1.82
UBR3-208ENST00000474426 CLUHP3Q96NS8 147 aa3.67□□□□□ -1.82
UBR3-208ENST00000474426 NUF2Q9BZD4 464 aa3.67□□□□□ -1.82
UBR3-208ENST00000474426 OR10A4Q9H209 315 aa3.67□□□□□ -1.82
UBR3-208ENST00000474426 VPS16Q9H269 839 aa3.67□□□□□ -1.82
UBR3-208ENST00000474426 RC3H2Q9HBD1 1191 aaKnown RBP3.67□□□□□ -1.82
UBR3-208ENST00000474426 ZDHHC4Q9NPG8 344 aa3.67□□□□□ -1.82
UBR3-208ENST00000474426 MRPL39Q9NYK5 338 aaKnown RBP3.67□□□□□ -1.82
UBR3-208ENST00000474426 PRKAG3Q9UGI9 489 aa3.67□□□□□ -1.82
UBR3-208ENST00000474426 DERAQ9Y315 318 aa3.67□□□□□ -1.82
UBR3-208ENST00000474426 STARD13Q9Y3M8 1113 aa3.67□□□□□ -1.82
UBR3-208ENST00000474426 TSC22D4Q9Y3Q8 395 aa3.67□□□□□ -1.82
UBR3-208ENST00000474426 PCDHGB6Q9Y5F9 930 aa3.67□□□□□ -1.82
UBR3-208ENST00000474426 F6X3S4 739 aa3.66□□□□□ -1.82
UBR3-208ENST00000474426 F8W8V4 182 aa3.66□□□□□ -1.82
UBR3-208ENST00000474426 SMAD7O15105 426 aaKnown RBP3.66□□□□□ -1.82
UBR3-208ENST00000474426 ATMINO43313 823 aaPredicted RBP3.66□□□□□ -1.82
UBR3-208ENST00000474426 ECE2O60344 883 aa3.66□□□□□ -1.82
UBR3-208ENST00000474426 GMNNO75496 209 aa3.66□□□□□ -1.82
UBR3-208ENST00000474426 GCATO75600 419 aa3.66□□□□□ -1.82
UBR3-208ENST00000474426 STARD3NLO95772 234 aa3.66□□□□□ -1.82
UBR3-208ENST00000474426 CRYZL1O95825 349 aa3.66□□□□□ -1.82
UBR3-208ENST00000474426 GALTP07902 379 aa3.66□□□□□ -1.82
UBR3-208ENST00000474426 HSMCR30P0CW71 290 aa3.66□□□□□ -1.82
UBR3-208ENST00000474426 TXNP10599 105 aaKnown RBP3.66□□□□□ -1.82
UBR3-208ENST00000474426 ICAM2P13598 275 aa3.66□□□□□ -1.82
UBR3-208ENST00000474426 HOXB8P17481 243 aaPredicted RBP3.66□□□□□ -1.82
UBR3-208ENST00000474426 BMI1P35226 326 aa3.66□□□□□ -1.82
UBR3-208ENST00000474426 ACAA2P42765 397 aaKnown RBP3.66□□□□□ -1.82
UBR3-208ENST00000474426 PTPN9P43378 593 aa3.66□□□□□ -1.82
UBR3-208ENST00000474426 MAP3K7CLP57077 242 aa3.66□□□□□ -1.82
UBR3-208ENST00000474426 USP46P62068 366 aa3.66□□□□□ -1.82
UBR3-208ENST00000474426 S100A12P80511 92 aa3.66□□□□□ -1.82
UBR3-208ENST00000474426 OCRLQ01968 901 aa3.66□□□□□ -1.82
UBR3-208ENST00000474426 SLC9A5Q14940 896 aa3.66□□□□□ -1.82
UBR3-208ENST00000474426 UGP2Q16851 508 aa3.66□□□□□ -1.82
UBR3-208ENST00000474426 AOC3Q16853 763 aa3.66□□□□□ -1.82
UBR3-208ENST00000474426 PARP6Q2NL67 630 aa3.66□□□□□ -1.82
UBR3-208ENST00000474426 SLC10A6Q3KNW5 377 aa3.66□□□□□ -1.82
UBR3-208ENST00000474426 C1orf141Q5JVX7 400 aa3.66□□□□□ -1.82
UBR3-208ENST00000474426 MANEAQ5SRI9 462 aa3.66□□□□□ -1.82
UBR3-208ENST00000474426 DUPD1Q68J44 220 aa3.66□□□□□ -1.82
UBR3-208ENST00000474426 IYDQ6PHW0 289 aa3.66□□□□□ -1.82
UBR3-208ENST00000474426 TRIM72Q6ZMU5 477 aa3.66□□□□□ -1.82
UBR3-208ENST00000474426 CHST15Q7LFX5 561 aaPredicted RBP3.66□□□□□ -1.82
UBR3-208ENST00000474426 GLRX5Q86SX6 157 aa3.66□□□□□ -1.82
UBR3-208ENST00000474426 SYCE1Q8N0S2 351 aa3.66□□□□□ -1.82
UBR3-208ENST00000474426 CAGE1Q8TC20 777 aa3.66□□□□□ -1.82
UBR3-208ENST00000474426 GRIN3AQ8TCU5 1115 aa3.66□□□□□ -1.82
UBR3-208ENST00000474426 LRRC8CQ8TDW0 803 aa3.66□□□□□ -1.82
UBR3-208ENST00000474426 SYTL5Q8TDW5 730 aaPredicted RBP3.66□□□□□ -1.82
UBR3-208ENST00000474426 ADAMTS16Q8TE57 1224 aa3.66□□□□□ -1.82
UBR3-208ENST00000474426 LRRN4Q8WUT4 740 aa3.66□□□□□ -1.82
UBR3-208ENST00000474426 USP13Q92995 863 aaPredicted RBP3.66□□□□□ -1.82
UBR3-208ENST00000474426 HDAC10Q969S8 669 aa3.66□□□□□ -1.82
UBR3-208ENST00000474426 DHRS9Q9BPW9 319 aa3.66□□□□□ -1.82
UBR3-208ENST00000474426 TREX2Q9BQ50 279 aaPredicted RBP3.66□□□□□ -1.82
UBR3-208ENST00000474426 ESYT1Q9BSJ8 1104 aa3.66□□□□□ -1.82
UBR3-208ENST00000474426 HAUS8Q9BT25 410 aa3.66□□□□□ -1.82
UBR3-208ENST00000474426 MLPHQ9BV36 600 aaPredicted RBP3.66□□□□□ -1.82
UBR3-208ENST00000474426 TDRD1Q9BXT4 1180 aaKnown RBP3.66□□□□□ -1.82
UBR3-208ENST00000474426 MOV10L1Q9BXT6 1211 aaKnown RBP3.66□□□□□ -1.82
UBR3-208ENST00000474426 REXO4Q9GZR2 422 aaKnown RBP3.66□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms