RNA–Protein interactions for RNA: ENST00000470942.1

HDAC6-218, Transcript of histone deacetylase 6, humanhuman

TSL 3

Gene HDAC6, Length 668 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-218ENST00000470942 GTPBP4Q9BZE4 634 aaKnown RBP16.77■□□□□ 0.28
HDAC6-218ENST00000470942 SMYD3Q9H7B4 428 aa16.77■□□□□ 0.28
HDAC6-218ENST00000470942 MMRN2Q9H8L6 949 aa16.77■□□□□ 0.28
HDAC6-218ENST00000470942 VRTNQ9H8Y1 702 aa16.77■□□□□ 0.28
HDAC6-218ENST00000470942 TBC1D17Q9HA65 648 aa16.77■□□□□ 0.28
HDAC6-218ENST00000470942 NUP210Q8TEM1 1887 aaPredicted RBP16.77■□□□□ 0.27
HDAC6-218ENST00000470942 PTPRDP23468 1912 aa16.76■□□□□ 0.27
HDAC6-218ENST00000470942 PI15O43692 258 aa16.76■□□□□ 0.27
HDAC6-218ENST00000470942 P4HA1P13674 534 aa16.76■□□□□ 0.27
HDAC6-218ENST00000470942 PTPN1P18031 435 aaKnown RBP16.76■□□□□ 0.27
HDAC6-218ENST00000470942 AOC1P19801 751 aa16.76■□□□□ 0.27
HDAC6-218ENST00000470942 BDNFP23560 247 aa16.76■□□□□ 0.27
HDAC6-218ENST00000470942 GRIK1P39086 918 aa16.76■□□□□ 0.27
HDAC6-218ENST00000470942 PLA2G5P39877 138 aa16.76■□□□□ 0.27
HDAC6-218ENST00000470942 PIK3CAP42336 1068 aa16.76■□□□□ 0.27
HDAC6-218ENST00000470942 RAP1GAPP47736 663 aa16.76■□□□□ 0.27
HDAC6-218ENST00000470942 GCLMP48507 274 aa16.76■□□□□ 0.27
HDAC6-218ENST00000470942 CDH8P55286 799 aa16.76■□□□□ 0.27
HDAC6-218ENST00000470942 SLC44A4Q53GD3 710 aa16.76■□□□□ 0.27
HDAC6-218ENST00000470942 C1orf220Q5T0J3 134 aa16.76■□□□□ 0.27
HDAC6-218ENST00000470942 VITQ6UXI7 678 aa16.76■□□□□ 0.27
HDAC6-218ENST00000470942 ELOA2Q8IYF1 753 aaPredicted RBP16.76■□□□□ 0.27
HDAC6-218ENST00000470942 PRSS33Q8NF86 280 aa16.76■□□□□ 0.27
HDAC6-218ENST00000470942 SPATA20Q8TB22 786 aa16.76■□□□□ 0.27
HDAC6-218ENST00000470942 MYCBPAPQ8TBZ2 947 aa16.76■□□□□ 0.27
HDAC6-218ENST00000470942 EEF2KMTQ96G04 330 aa16.76■□□□□ 0.27
HDAC6-218ENST00000470942 SHDQ96IW2 340 aa16.76■□□□□ 0.27
HDAC6-218ENST00000470942 TRMT61BQ9BVS5 477 aaKnown RBP16.76■□□□□ 0.27
HDAC6-218ENST00000470942 BRD9Q9H8M2 597 aa16.76■□□□□ 0.27
HDAC6-218ENST00000470942 TRPV4Q9HBA0 871 aa16.76■□□□□ 0.27
HDAC6-218ENST00000470942 IL21Q9HBE4 155 aa16.76■□□□□ 0.27
HDAC6-218ENST00000470942 NME7Q9Y5B8 376 aa16.76■□□□□ 0.27
HDAC6-218ENST00000470942 OBSL1O75147 1896 aa16.76■□□□□ 0.27
HDAC6-218ENST00000470942 GREB1Q4ZG55 1949 aa16.75■□□□□ 0.27
HDAC6-218ENST00000470942 SLC38A8A6NNN8 435 aa16.75■□□□□ 0.27
HDAC6-218ENST00000470942 HEPACAM2A8MVW5 462 aa16.75■□□□□ 0.27
HDAC6-218ENST00000470942 DPYSL4O14531 572 aa16.75■□□□□ 0.27
HDAC6-218ENST00000470942 HLA-DRAP01903 254 aa16.75■□□□□ 0.27
HDAC6-218ENST00000470942 EPB41P11171 864 aaKnown RBP16.75■□□□□ 0.27
HDAC6-218ENST00000470942 HMGA1P17096 107 aaKnown RBP16.75■□□□□ 0.27
HDAC6-218ENST00000470942 PSMC3P17980 439 aa16.75■□□□□ 0.27
HDAC6-218ENST00000470942 GDI1P31150 447 aa16.75■□□□□ 0.27
HDAC6-218ENST00000470942 MAGEA11P43364 429 aa16.75■□□□□ 0.27
HDAC6-218ENST00000470942 STIM1Q13586 685 aa16.75■□□□□ 0.27
HDAC6-218ENST00000470942 MLF2Q15773 248 aaPredicted RBP16.75■□□□□ 0.27
HDAC6-218ENST00000470942 COBLL1Q53SF7 1204 aa16.75■□□□□ 0.27
HDAC6-218ENST00000470942 ARID3BQ8IVW6 561 aaPredicted RBP16.75■□□□□ 0.27
HDAC6-218ENST00000470942 YAF2Q8IY57 180 aa16.75■□□□□ 0.27
HDAC6-218ENST00000470942 TAF4BQ92750 862 aa16.75■□□□□ 0.27
HDAC6-218ENST00000470942 E2F7Q96AV8 911 aa16.75■□□□□ 0.27
HDAC6-218ENST00000470942 PCED1BQ96HM7 432 aa16.75■□□□□ 0.27
HDAC6-218ENST00000470942 DPEP3Q9H4B8 488 aa16.75■□□□□ 0.27
HDAC6-218ENST00000470942 TASP1Q9H6P5 420 aa16.75■□□□□ 0.27
HDAC6-218ENST00000470942 UTP3Q9NQZ2 479 aaKnown RBP eCLIP16.75■□□□□ 0.272e-7■■■■■ 33.6
HDAC6-218ENST00000470942 WDFY4Q6ZS81 3184 aa16.75■□□□□ 0.27
HDAC6-218ENST00000470942 F11P03951 625 aa16.74■□□□□ 0.27
HDAC6-218ENST00000470942 ANXA13P27216 316 aa16.74■□□□□ 0.27
HDAC6-218ENST00000470942 NUBP1P53384 320 aa16.74■□□□□ 0.27
HDAC6-218ENST00000470942 PTPN5P54829 565 aa16.74■□□□□ 0.27
HDAC6-218ENST00000470942 NLRP12P59046 1061 aa16.74■□□□□ 0.27
HDAC6-218ENST00000470942 PPP3CAQ08209 521 aa16.74■□□□□ 0.27
HDAC6-218ENST00000470942 ANKRD40Q6AI12 368 aa16.74■□□□□ 0.27
HDAC6-218ENST00000470942 SPOPLQ6IQ16 392 aa16.74■□□□□ 0.27
HDAC6-218ENST00000470942 PHLDB3Q6NSJ2 640 aa16.74■□□□□ 0.27
HDAC6-218ENST00000470942 VSTM1Q6UX27 236 aa16.74■□□□□ 0.27
HDAC6-218ENST00000470942 MFSD6LQ8IWD5 586 aa16.74■□□□□ 0.27
HDAC6-218ENST00000470942 ADSSL1Q8N142 457 aa16.74■□□□□ 0.27
HDAC6-218ENST00000470942 DEPDC1BQ8WUY9 529 aa16.74■□□□□ 0.27
HDAC6-218ENST00000470942 MRPS31Q92665 395 aaKnown RBP16.74■□□□□ 0.27
HDAC6-218ENST00000470942 IRF7Q92985 503 aa16.74■□□□□ 0.27
HDAC6-218ENST00000470942 MKNK1Q9BUB5 465 aa16.74■□□□□ 0.27
HDAC6-218ENST00000470942 IMPG2Q9BZV3 1241 aa16.74■□□□□ 0.27
HDAC6-218ENST00000470942 UXTQ9UBK9 157 aaPredicted RBP16.74■□□□□ 0.27
HDAC6-218ENST00000470942 MAN1B1Q9UKM7 699 aa16.74■□□□□ 0.27
HDAC6-218ENST00000470942 MYH10P35580 1976 aa16.74■□□□□ 0.27
HDAC6-218ENST00000470942 MIA3Q5JRA6 1907 aa16.74■□□□□ 0.27
HDAC6-218ENST00000470942 TICRRQ7Z2Z1 1910 aa16.74■□□□□ 0.27
HDAC6-218ENST00000470942 ZNF263O14978 683 aa16.73■□□□□ 0.27
HDAC6-218ENST00000470942 GALR2O43603 387 aaPredicted RBP16.73■□□□□ 0.27
HDAC6-218ENST00000470942 NOL4O94818 638 aa16.73■□□□□ 0.27
HDAC6-218ENST00000470942 ASS1P00966 412 aaKnown RBP16.73■□□□□ 0.27
HDAC6-218ENST00000470942 STARD6P59095 220 aa16.73■□□□□ 0.27
HDAC6-218ENST00000470942 FKBP3Q00688 224 aaKnown RBP16.73■□□□□ 0.27
HDAC6-218ENST00000470942 PRKCQQ04759 706 aa16.73■□□□□ 0.27
HDAC6-218ENST00000470942 ENPEPQ07075 957 aa16.73■□□□□ 0.27
HDAC6-218ENST00000470942 TMEM150AQ86TG1 271 aa16.73■□□□□ 0.27
HDAC6-218ENST00000470942 MAB21L3Q8N8X9 362 aa16.73■□□□□ 0.27
HDAC6-218ENST00000470942 B3GALNT2Q8NCR0 500 aa16.73■□□□□ 0.27
HDAC6-218ENST00000470942 CCDC150Q8NCX0 1101 aa16.73■□□□□ 0.27
HDAC6-218ENST00000470942 RSPRY1Q96DX4 576 aa16.73■□□□□ 0.27
HDAC6-218ENST00000470942 SLC46A2Q9BY10 475 aa16.73■□□□□ 0.27
HDAC6-218ENST00000470942 SDCBP2Q9H190 292 aa16.73■□□□□ 0.27
HDAC6-218ENST00000470942 TMEM8AQ9HCN3 771 aa16.73■□□□□ 0.27
HDAC6-218ENST00000470942 HEBP1Q9NRV9 189 aa16.73■□□□□ 0.27
HDAC6-218ENST00000470942 SIT1Q9Y3P8 196 aa16.73■□□□□ 0.27
HDAC6-218ENST00000470942 COL4A3Q01955 1670 aa16.72■□□□□ 0.27
HDAC6-218ENST00000470942 TRIM49BA6NDI0 452 aa16.72■□□□□ 0.27
HDAC6-218ENST00000470942 BIN1O00499 593 aa16.72■□□□□ 0.27
HDAC6-218ENST00000470942 PSMA7O14818 248 aa16.72■□□□□ 0.27
HDAC6-218ENST00000470942 TRIM66O15016 1216 aa16.72■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms