RNA–Protein interactions for RNA: ENST00000469511.1

PTPN4-209, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 476 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-209ENST00000469511 TMEM196Q5HYL7 178 aa5.8□□□□□ -1.48
PTPN4-209ENST00000469511 EARS2Q5JPH6 523 aaKnown RBP5.8□□□□□ -1.48
PTPN4-209ENST00000469511 NCAPH2Q6IBW4 605 aa5.8□□□□□ -1.48
PTPN4-209ENST00000469511 ANKS3Q6ZW76 656 aa5.8□□□□□ -1.48
PTPN4-209ENST00000469511 DHX32Q7L7V1 743 aaKnown RBP5.8□□□□□ -1.48
PTPN4-209ENST00000469511 PIP4P1Q86T03 277 aa5.8□□□□□ -1.48
PTPN4-209ENST00000469511 TPH2Q8IWU9 490 aa5.8□□□□□ -1.48
PTPN4-209ENST00000469511 PNPLA1Q8N8W4 532 aa5.8□□□□□ -1.48
PTPN4-209ENST00000469511 RLN3Q8WXF3 142 aa5.8□□□□□ -1.48
PTPN4-209ENST00000469511 PIGKQ92643 395 aa5.8□□□□□ -1.48
PTPN4-209ENST00000469511 C18orf25Q96B23 403 aaPredicted RBP5.8□□□□□ -1.48
PTPN4-209ENST00000469511 SUSD3Q96L08 255 aa5.8□□□□□ -1.48
PTPN4-209ENST00000469511 ZNF512Q96ME7 567 aaPredicted RBP5.8□□□□□ -1.48
PTPN4-209ENST00000469511 CAMK1GQ96NX5 476 aa5.8□□□□□ -1.48
PTPN4-209ENST00000469511 CITED4Q96RK1 184 aa5.8□□□□□ -1.48
PTPN4-209ENST00000469511 TMEM209Q96SK2 561 aa5.8□□□□□ -1.48
PTPN4-209ENST00000469511 RBCK1Q9BYM8 510 aa5.8□□□□□ -1.48
PTPN4-209ENST00000469511 FZD8Q9H461 694 aa5.8□□□□□ -1.48
PTPN4-209ENST00000469511 SLITRK6Q9H5Y7 841 aa5.8□□□□□ -1.48
PTPN4-209ENST00000469511 KCNMB3Q9NPA1 279 aa5.8□□□□□ -1.48
PTPN4-209ENST00000469511 GKN1Q9NS71 199 aa5.8□□□□□ -1.48
PTPN4-209ENST00000469511 CACNA2D2Q9NY47 1150 aa5.8□□□□□ -1.48
PTPN4-209ENST00000469511 DDX25Q9UHL0 483 aaKnown RBP5.8□□□□□ -1.48
PTPN4-209ENST00000469511 DACH1Q9UI36 760 aa5.8□□□□□ -1.48
PTPN4-209ENST00000469511 KCNJ14Q9UNX9 436 aa5.8□□□□□ -1.48
PTPN4-209ENST00000469511 SLC8A2Q9UPR5 921 aa5.8□□□□□ -1.48
PTPN4-209ENST00000469511 TIMM13Q9Y5L4 95 aaPredicted RBP5.8□□□□□ -1.48
PTPN4-209ENST00000469511 SCN1AP35498 2009 aa5.8□□□□□ -1.48
PTPN4-209ENST00000469511 TENM4Q6N022 2769 aa5.8□□□□□ -1.48
PTPN4-209ENST00000469511 TCHHQ07283 1943 aa5.8□□□□□ -1.48
PTPN4-209ENST00000469511 ATXN2Q99700 1313 aaKnown RBP5.79□□□□□ -1.48
PTPN4-209ENST00000469511 TSC2P49815 1807 aa5.79□□□□□ -1.48
PTPN4-209ENST00000469511 PTPRQQ9UMZ3 2332 aa5.79□□□□□ -1.48
PTPN4-209ENST00000469511 FREM2Q5SZK8 3169 aa5.79□□□□□ -1.48
PTPN4-209ENST00000469511 CCDC163A0A0D9SF12 145 aa5.79□□□□□ -1.48
PTPN4-209ENST00000469511 SMIM28A0A1B0GU29 152 aa5.79□□□□□ -1.48
PTPN4-209ENST00000469511 CCDC194A0A1B0GVG4 234 aa5.79□□□□□ -1.48
PTPN4-209ENST00000469511 FAM221BA6H8Z2 402 aa5.79□□□□□ -1.48
PTPN4-209ENST00000469511 LRRIQ4A6NIV6 560 aa5.79□□□□□ -1.48
PTPN4-209ENST00000469511 NDUFB5O43674 189 aa5.79□□□□□ -1.48
PTPN4-209ENST00000469511 FZD6O60353 706 aa5.79□□□□□ -1.48
PTPN4-209ENST00000469511 MAN1A2O60476 641 aa5.79□□□□□ -1.48
PTPN4-209ENST00000469511 USO1O60763 962 aaKnown RBP5.79□□□□□ -1.48
PTPN4-209ENST00000469511 F11P03951 625 aa5.79□□□□□ -1.48
PTPN4-209ENST00000469511 MAPK1P28482 360 aa5.79□□□□□ -1.48
PTPN4-209ENST00000469511 DHPSP49366 369 aaPredicted RBP5.79□□□□□ -1.48
PTPN4-209ENST00000469511 NLRP5P59047 1200 aa5.79□□□□□ -1.48
PTPN4-209ENST00000469511 OSTNP61366 133 aa5.79□□□□□ -1.48
PTPN4-209ENST00000469511 POU5F1BQ06416 359 aa5.79□□□□□ -1.48
PTPN4-209ENST00000469511 DUSP4Q13115 394 aa5.79□□□□□ -1.48
PTPN4-209ENST00000469511 TFDP1Q14186 410 aa5.79□□□□□ -1.48
PTPN4-209ENST00000469511 DMC1Q14565 340 aa5.79□□□□□ -1.48
PTPN4-209ENST00000469511 MXD4Q14582 209 aaPredicted RBP5.79□□□□□ -1.48
PTPN4-209ENST00000469511 CTXN3Q4LDR2 81 aa5.79□□□□□ -1.48
PTPN4-209ENST00000469511 ARHGAP29Q52LW3 1261 aa5.79□□□□□ -1.48
PTPN4-209ENST00000469511 GPR158Q5T848 1215 aa5.79□□□□□ -1.48
PTPN4-209ENST00000469511 NT5DC1Q5TFE4 455 aa5.79□□□□□ -1.48
PTPN4-209ENST00000469511 LARP1BQ659C4 914 aaKnown RBP5.79□□□□□ -1.48
PTPN4-209ENST00000469511 PMS2CLQ68D20 193 aa5.79□□□□□ -1.48
PTPN4-209ENST00000469511 IQCEQ6IPM2 695 aa5.79□□□□□ -1.48
PTPN4-209ENST00000469511 PDXDC1Q6P996 788 aa5.79□□□□□ -1.48
PTPN4-209ENST00000469511 Q6ZUG5 572 aa5.79□□□□□ -1.48
PTPN4-209ENST00000469511 RTL10Q7L3V2 364 aa5.79□□□□□ -1.48
PTPN4-209ENST00000469511 ARMCX6Q7L4S7 300 aa5.79□□□□□ -1.48
PTPN4-209ENST00000469511 SFTPA1Q8IWL2 248 aa5.79□□□□□ -1.48
PTPN4-209ENST00000469511 HACE1Q8IYU2 909 aa5.79□□□□□ -1.48
PTPN4-209ENST00000469511 BLIDQ8IZY5 108 aa5.79□□□□□ -1.48
PTPN4-209ENST00000469511 STKLD1Q8NE28 680 aa5.79□□□□□ -1.48
PTPN4-209ENST00000469511 RPLP0P6Q8NHW5 317 aa5.79□□□□□ -1.48
PTPN4-209ENST00000469511 BRF1Q92994 677 aa5.79□□□□□ -1.48
PTPN4-209ENST00000469511 LPIN3Q9BQK8 851 aa5.79□□□□□ -1.48
PTPN4-209ENST00000469511 KIFC3Q9BVG8 833 aa5.79□□□□□ -1.48
PTPN4-209ENST00000469511 EBF3Q9H4W6 596 aa5.79□□□□□ -1.48
PTPN4-209ENST00000469511 ASAH2Q9NR71 780 aa5.79□□□□□ -1.48
PTPN4-209ENST00000469511 DMGDHQ9UI17 866 aaKnown RBP5.79□□□□□ -1.48
PTPN4-209ENST00000469511 PCDHA4Q9UN74 947 aa5.79□□□□□ -1.48
PTPN4-209ENST00000469511 CCL26Q9Y258 94 aa5.79□□□□□ -1.48
PTPN4-209ENST00000469511 RAXQ9Y2V3 346 aa5.79□□□□□ -1.48
PTPN4-209ENST00000469511 YIPF1Q9Y548 306 aa5.79□□□□□ -1.48
PTPN4-209ENST00000469511 HECTD1Q9ULT8 2610 aa5.79□□□□□ -1.48
PTPN4-209ENST00000469511 MYO18BQ8IUG5 2567 aa5.79□□□□□ -1.48
PTPN4-209ENST00000469511 KNTC1P50748 2209 aa5.79□□□□□ -1.48
PTPN4-209ENST00000469511 CABIN1Q9Y6J0 2220 aa5.79□□□□□ -1.48
PTPN4-209ENST00000469511 ZNF462Q96JM2 2506 aa5.79□□□□□ -1.48
PTPN4-209ENST00000469511 ZMYM2Q9UBW7 1377 aa5.79□□□□□ -1.48
PTPN4-209ENST00000469511 MYH11P35749 1972 aa5.78□□□□□ -1.48
PTPN4-209ENST00000469511 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa5.78□□□□□ -1.48
PTPN4-209ENST00000469511 PYCARD-AS1I3L0S3 204 aa5.78□□□□□ -1.48
PTPN4-209ENST00000469511 PODXLO00592 558 aa5.78□□□□□ -1.48
PTPN4-209ENST00000469511 TRDMT1O14717 391 aaKnown RBP5.78□□□□□ -1.48
PTPN4-209ENST00000469511 AKAP3O75969 853 aa5.78□□□□□ -1.48
PTPN4-209ENST00000469511 RHOBTB1O94844 696 aa5.78□□□□□ -1.48
PTPN4-209ENST00000469511 ENGP17813 658 aa5.78□□□□□ -1.48
PTPN4-209ENST00000469511 GABRR2P28476 465 aa5.78□□□□□ -1.48
PTPN4-209ENST00000469511 NMT1P30419 496 aaKnown RBP5.78□□□□□ -1.48
PTPN4-209ENST00000469511 PTGER3P43115 390 aa5.78□□□□□ -1.48
PTPN4-209ENST00000469511 RARRES1P49788 294 aa5.78□□□□□ -1.48
PTPN4-209ENST00000469511 DGKEP52429 567 aa5.78□□□□□ -1.48
PTPN4-209ENST00000469511 SPAG1Q07617 926 aa5.78□□□□□ -1.48
PTPN4-209ENST00000469511 NCBP1Q09161 790 aaKnown RBP5.78□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms