RNA–Protein interactions for RNA: ENST00000466288.1

CXCR4-203, Transcript of C-X-C motif chemokine receptor 4, humanhuman

TSL 1 (best)

Gene CXCR4, Length 1,485 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CXCR4-203ENST00000466288 MAGED2Q9UNF1 606 aaPredicted RBP15.6■□□□□ 0.09
CXCR4-203ENST00000466288 NUP205Q92621 2012 aa15.6■□□□□ 0.09
CXCR4-203ENST00000466288 ASCC3Q8N3C0 2202 aaKnown RBP15.6■□□□□ 0.09
CXCR4-203ENST00000466288 UPK3BL1B0FP48 263 aa15.59■□□□□ 0.09
CXCR4-203ENST00000466288 UPK3BL2E5RIL1 263 aa15.59■□□□□ 0.09
CXCR4-203ENST00000466288 TNFRSF10BO14763 440 aa15.59■□□□□ 0.09
CXCR4-203ENST00000466288 CSH1P0DML2 217 aa15.59■□□□□ 0.09
CXCR4-203ENST00000466288 CSH2P0DML3 217 aa15.59■□□□□ 0.09
CXCR4-203ENST00000466288 HNRNPLP14866 589 aaKnown RBP eCLIP15.59■□□□□ 0.09
CXCR4-203ENST00000466288 IFNAR2P48551 515 aa15.59■□□□□ 0.09
CXCR4-203ENST00000466288 LIG4P49917 911 aa15.59■□□□□ 0.09
CXCR4-203ENST00000466288 ANAPC15P60006 121 aa15.59■□□□□ 0.09
CXCR4-203ENST00000466288 CRY1Q16526 586 aa15.59■□□□□ 0.09
CXCR4-203ENST00000466288 C2orf27AQ580R0 203 aa15.59■□□□□ 0.09
CXCR4-203ENST00000466288 SDHAF4Q5VUM1 108 aa15.59■□□□□ 0.09
CXCR4-203ENST00000466288 TMEM92Q6UXU6 159 aa15.59■□□□□ 0.09
CXCR4-203ENST00000466288 CD302Q8IX05 232 aa15.59■□□□□ 0.09
CXCR4-203ENST00000466288 FAM212AQ96EL1 285 aa15.59■□□□□ 0.09
CXCR4-203ENST00000466288 CYP2S1Q96SQ9 504 aa15.59■□□□□ 0.09
CXCR4-203ENST00000466288 PYM1Q9BRP8 204 aaKnown RBP15.59■□□□□ 0.09
CXCR4-203ENST00000466288 LINC00597Q9H2U6 94 aa15.59■□□□□ 0.09
CXCR4-203ENST00000466288 TMEM206Q9H813 350 aa15.59■□□□□ 0.09
CXCR4-203ENST00000466288 CPSF3Q9UKF6 684 aaKnown RBP15.59■□□□□ 0.09
CXCR4-203ENST00000466288 MMP17Q9ULZ9 603 aa15.59■□□□□ 0.09
CXCR4-203ENST00000466288 GPSM3Q9Y4H4 160 aa15.59■□□□□ 0.09
CXCR4-203ENST00000466288 PCDHB5Q9Y5E4 795 aa15.59■□□□□ 0.09
CXCR4-203ENST00000466288 TSC2P49815 1807 aa15.59■□□□□ 0.09
CXCR4-203ENST00000466288 CACNA1EQ15878 2313 aa15.59■□□□□ 0.09
CXCR4-203ENST00000466288 A0A0B4J269 797 aa15.59■□□□□ 0.09
CXCR4-203ENST00000466288 PIGRP01833 764 aa15.59■□□□□ 0.09
CXCR4-203ENST00000466288 OPRD1P41143 372 aa15.59■□□□□ 0.09
CXCR4-203ENST00000466288 P2RY2P41231 377 aa15.59■□□□□ 0.09
CXCR4-203ENST00000466288 PTGER3P43115 390 aa15.59■□□□□ 0.09
CXCR4-203ENST00000466288 SEC13P55735 322 aa15.59■□□□□ 0.09
CXCR4-203ENST00000466288 TMEM132DQ14C87 1099 aa15.59■□□□□ 0.09
CXCR4-203ENST00000466288 SOWAHCQ53LP3 525 aaPredicted RBP15.59■□□□□ 0.09
CXCR4-203ENST00000466288 SLC23A3Q6PIS1 610 aa15.59■□□□□ 0.09
CXCR4-203ENST00000466288 SYT12Q8IV01 421 aa15.59■□□□□ 0.09
CXCR4-203ENST00000466288 EFCAB13Q8IY85 973 aa15.59■□□□□ 0.09
CXCR4-203ENST00000466288 DCP1BQ8IZD4 617 aaKnown RBP15.59■□□□□ 0.09
CXCR4-203ENST00000466288 CCDC33Q8N5R6 958 aa15.59■□□□□ 0.09
CXCR4-203ENST00000466288 FRMD1Q8N878 549 aa15.59■□□□□ 0.09
CXCR4-203ENST00000466288 SYT2Q8N9I0 419 aaPredicted RBP15.59■□□□□ 0.09
CXCR4-203ENST00000466288 RLN3Q8WXF3 142 aa15.59■□□□□ 0.09
CXCR4-203ENST00000466288 C8orf76Q96K31 380 aa15.59■□□□□ 0.09
CXCR4-203ENST00000466288 MYRFLQ96LU7 910 aa15.59■□□□□ 0.09
CXCR4-203ENST00000466288 PI4K2AQ9BTU6 479 aa15.59■□□□□ 0.09
CXCR4-203ENST00000466288 CCSER1Q9C0I3 900 aa15.59■□□□□ 0.09
CXCR4-203ENST00000466288 DERAQ9Y315 318 aa15.59■□□□□ 0.09
CXCR4-203ENST00000466288 GCN1Q92616 2671 aaKnown RBP15.58■□□□□ 0.08
CXCR4-203ENST00000466288 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa15.58■□□□□ 0.08
CXCR4-203ENST00000466288 H0Y626 953 aa15.58■□□□□ 0.08
CXCR4-203ENST00000466288 HNRNPDLO14979 420 aaKnown RBP15.58■□□□□ 0.08
CXCR4-203ENST00000466288 PRPF40AO75400 957 aaKnown RBP15.58■□□□□ 0.08
CXCR4-203ENST00000466288 NOL4O94818 638 aa15.58■□□□□ 0.08
CXCR4-203ENST00000466288 TRIM16O95361 564 aa15.58■□□□□ 0.08
CXCR4-203ENST00000466288 CKMP06732 381 aa15.58■□□□□ 0.08
CXCR4-203ENST00000466288 CHRM1P11229 460 aaPredicted RBP15.58■□□□□ 0.08
CXCR4-203ENST00000466288 TAF6P49848 677 aa15.58■□□□□ 0.08
CXCR4-203ENST00000466288 TOB1P50616 345 aaPredicted RBP15.58■□□□□ 0.08
CXCR4-203ENST00000466288 SLC12A3P55017 1021 aa15.58■□□□□ 0.08
CXCR4-203ENST00000466288 FAM193AP78312 1265 aa15.58■□□□□ 0.08
CXCR4-203ENST00000466288 NR1H3Q13133 447 aa15.58■□□□□ 0.08
CXCR4-203ENST00000466288 DDR2Q16832 855 aa15.58■□□□□ 0.08
CXCR4-203ENST00000466288 GAB4Q2WGN9 574 aa15.58■□□□□ 0.08
CXCR4-203ENST00000466288 ARMCX6Q7L4S7 300 aa15.58■□□□□ 0.08
CXCR4-203ENST00000466288 LPCAT2Q7L5N7 544 aa15.58■□□□□ 0.08
CXCR4-203ENST00000466288 TMEFF1Q8IYR6 380 aa15.58■□□□□ 0.08
CXCR4-203ENST00000466288 CHCHD4Q8N4Q1 142 aa15.58■□□□□ 0.08
CXCR4-203ENST00000466288 TTC16Q8NEE8 873 aa15.58■□□□□ 0.08
CXCR4-203ENST00000466288 TRMT2BQ96GJ1 504 aaKnown RBP15.58■□□□□ 0.08
CXCR4-203ENST00000466288 TRPC7Q9HCX4 862 aa15.58■□□□□ 0.08
CXCR4-203ENST00000466288 GCNT4Q9P109 453 aa15.58■□□□□ 0.08
CXCR4-203ENST00000466288 MBD1Q9UIS9 605 aaPredicted RBP15.58■□□□□ 0.08
CXCR4-203ENST00000466288 TRAV19A0A0A6YYK7 116 aa15.57■□□□□ 0.08
CXCR4-203ENST00000466288 NPHP3-ACAD11A0A0J9YXS1 232 aa15.57■□□□□ 0.08
CXCR4-203ENST00000466288 H0YCG3 227 aa15.57■□□□□ 0.08
CXCR4-203ENST00000466288 USP17L7P0C7H9 530 aa15.57■□□□□ 0.08
CXCR4-203ENST00000466288 TCF3P15923 654 aa15.57■□□□□ 0.08
CXCR4-203ENST00000466288 ZC2HC1CQ53FD0 456 aaPredicted RBP15.57■□□□□ 0.08
CXCR4-203ENST00000466288 HYIQ5T013 277 aa15.57■□□□□ 0.08
CXCR4-203ENST00000466288 PEAR1Q5VY43 1037 aaPredicted RBP15.57■□□□□ 0.08
CXCR4-203ENST00000466288 SLC39A4Q6P5W5 647 aa15.57■□□□□ 0.08
CXCR4-203ENST00000466288 TTC30AQ86WT1 665 aa15.57■□□□□ 0.08
CXCR4-203ENST00000466288 ARL14EPQ8N8R7 260 aaPredicted RBP15.57■□□□□ 0.08
CXCR4-203ENST00000466288 FBXO18Q8NFZ0 1043 aa15.57■□□□□ 0.08
CXCR4-203ENST00000466288 SH3RF2Q8TEC5 729 aa15.57■□□□□ 0.08
CXCR4-203ENST00000466288 PNMA5Q96PV4 448 aa15.57■□□□□ 0.08
CXCR4-203ENST00000466288 MSTO1Q9BUK6 570 aa15.57■□□□□ 0.08
CXCR4-203ENST00000466288 LARSQ9P2J5 1176 aaKnown RBP15.57■□□□□ 0.08
CXCR4-203ENST00000466288 UXTQ9UBK9 157 aaPredicted RBP15.57■□□□□ 0.08
CXCR4-203ENST00000466288 PILRBQ9UKJ0 227 aa15.57■□□□□ 0.08
CXCR4-203ENST00000466288 C2CD2Q9Y426 696 aa15.57■□□□□ 0.08
CXCR4-203ENST00000466288 PCDHB6Q9Y5E3 794 aa15.57■□□□□ 0.08
CXCR4-203ENST00000466288 SETXQ7Z333 2677 aaKnown RBP15.57■□□□□ 0.08
CXCR4-203ENST00000466288 PCNX2A6NKB5 2137 aa15.56■□□□□ 0.08
CXCR4-203ENST00000466288 THADAQ6YHU6 1953 aa15.56■□□□□ 0.08
CXCR4-203ENST00000466288 EIF5BO60841 1220 aaKnown RBP15.56■□□□□ 0.08
CXCR4-203ENST00000466288 ALDH1A2O94788 518 aa15.56■□□□□ 0.08
CXCR4-203ENST00000466288 MRPS21P82921 87 aaKnown RBP15.56■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms