RNA–Protein interactions for RNA: ENST00000466285.1

COL6A1-203, Transcript of collagen type VI alpha 1 chain, humanhuman

TSL 3

Gene COL6A1, Length 500 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-203ENST00000466285 AVPR1AP37288 418 aa22.12■■□□□ 1.13
COL6A1-203ENST00000466285 PNPLA4P41247 253 aa22.12■■□□□ 1.13
COL6A1-203ENST00000466285 ARHGAP30Q7Z6I6 1101 aaPredicted RBP22.12■■□□□ 1.13
COL6A1-203ENST00000466285 LRRC52Q8N7C0 313 aa22.12■■□□□ 1.13
COL6A1-203ENST00000466285 TTC16Q8NEE8 873 aa22.12■■□□□ 1.13
COL6A1-203ENST00000466285 SECISBP2LQ93073 1101 aaKnown RBP22.12■■□□□ 1.13
COL6A1-203ENST00000466285 ACBD6Q9BR61 282 aa22.12■■□□□ 1.13
COL6A1-203ENST00000466285 TRPC7Q9HCX4 862 aa22.12■■□□□ 1.13
COL6A1-203ENST00000466285 CRTAC1Q9NQ79 661 aa22.12■■□□□ 1.13
COL6A1-203ENST00000466285 SEMA4GQ9NTN9 838 aa22.12■■□□□ 1.13
COL6A1-203ENST00000466285 ITGA11Q9UKX5 1188 aa22.12■■□□□ 1.13
COL6A1-203ENST00000466285 RAB23Q9ULC3 237 aa22.12■■□□□ 1.13
COL6A1-203ENST00000466285 WNT6Q9Y6F9 365 aa22.12■■□□□ 1.13
COL6A1-203ENST00000466285 LAMA1P25391 3075 aa22.12■■□□□ 1.13
COL6A1-203ENST00000466285 C2orf78A6NCI8 922 aa22.11■■□□□ 1.13
COL6A1-203ENST00000466285 GABRDO14764 452 aa22.11■■□□□ 1.13
COL6A1-203ENST00000466285 HUS1O60921 280 aa22.11■■□□□ 1.13
COL6A1-203ENST00000466285 RETP07949 1114 aa22.11■■□□□ 1.13
COL6A1-203ENST00000466285 CASP1P29466 404 aa22.11■■□□□ 1.13
COL6A1-203ENST00000466285 TXLNAP40222 546 aa22.11■■□□□ 1.13
COL6A1-203ENST00000466285 USP46P62068 366 aa22.11■■□□□ 1.13
COL6A1-203ENST00000466285 SMARCB1Q12824 385 aa22.11■■□□□ 1.13
COL6A1-203ENST00000466285 USP4Q13107 963 aa22.11■■□□□ 1.13
COL6A1-203ENST00000466285 ZNF77Q15935 545 aa22.11■■□□□ 1.13
COL6A1-203ENST00000466285 C1orf228Q6PIY5 440 aa22.11■■□□□ 1.13
COL6A1-203ENST00000466285 CCDC73Q6ZRK6 1079 aa22.11■■□□□ 1.13
COL6A1-203ENST00000466285 MON1AQ86VX9 555 aa22.11■■□□□ 1.13
COL6A1-203ENST00000466285 GPD1LQ8N335 351 aa22.11■■□□□ 1.13
COL6A1-203ENST00000466285 MYLPFQ96A32 169 aa22.11■■□□□ 1.13
COL6A1-203ENST00000466285 RXFP3Q9NSD7 469 aa22.11■■□□□ 1.13
COL6A1-203ENST00000466285 TDP1Q9NUW8 608 aa22.11■■□□□ 1.13
COL6A1-203ENST00000466285 GDAP2Q9NXN4 497 aa22.11■■□□□ 1.13
COL6A1-203ENST00000466285 EPG5Q9HCE0 2579 aa22.1■■□□□ 1.13
COL6A1-203ENST00000466285 TPRP12270 2363 aaKnown RBP22.1■■□□□ 1.13
COL6A1-203ENST00000466285 LOC105378220A0A1B0GUY1 285 aaPredicted RBP22.1■■□□□ 1.13
COL6A1-203ENST00000466285 RNF40O75150 1001 aa22.1■■□□□ 1.13
COL6A1-203ENST00000466285 CSH1P0DML2 217 aa22.1■■□□□ 1.13
COL6A1-203ENST00000466285 CSH2P0DML3 217 aa22.1■■□□□ 1.13
COL6A1-203ENST00000466285 PDCP20941 246 aa22.1■■□□□ 1.13
COL6A1-203ENST00000466285 NASPP49321 788 aaPredicted RBP22.1■■□□□ 1.13
COL6A1-203ENST00000466285 ZXDBP98169 803 aa22.1■■□□□ 1.13
COL6A1-203ENST00000466285 NFE2Q16621 373 aaPredicted RBP22.1■■□□□ 1.13
COL6A1-203ENST00000466285 PRR23CQ6ZRP0 262 aa22.1■■□□□ 1.13
COL6A1-203ENST00000466285 LIMS2Q7Z4I7 341 aa22.1■■□□□ 1.13
COL6A1-203ENST00000466285 WDR5BQ86VZ2 330 aa22.1■■□□□ 1.13
COL6A1-203ENST00000466285 SCN4BQ8IWT1 228 aa22.1■■□□□ 1.13
COL6A1-203ENST00000466285 GPR161Q8N6U8 529 aaKnown RBP22.1■■□□□ 1.13
COL6A1-203ENST00000466285 MRPS31Q92665 395 aaKnown RBP22.1■■□□□ 1.13
COL6A1-203ENST00000466285 GZF1Q9H116 711 aaPredicted RBP22.1■■□□□ 1.13
COL6A1-203ENST00000466285 ABCB6Q9NP58 842 aa22.1■■□□□ 1.13
COL6A1-203ENST00000466285 TMEM30AQ9NV96 361 aa22.1■■□□□ 1.13
COL6A1-203ENST00000466285 INTS13Q9NVM9 706 aa22.1■■□□□ 1.13
COL6A1-203ENST00000466285 PCDHB13Q9Y5F0 798 aa22.1■■□□□ 1.13
COL6A1-203ENST00000466285 KMT2BQ9UMN6 2715 aaPredicted RBP22.09■■□□□ 1.13
COL6A1-203ENST00000466285 TMEM191BP0C7N4 346 aa22.09■■□□□ 1.13
COL6A1-203ENST00000466285 MTF1Q14872 753 aa22.09■■□□□ 1.13
COL6A1-203ENST00000466285 TMEM86AQ8N2M4 240 aa22.09■■□□□ 1.13
COL6A1-203ENST00000466285 TOP6BLQ8N6T0 577 aa22.09■■□□□ 1.13
COL6A1-203ENST00000466285 TRMT2BQ96GJ1 504 aaKnown RBP22.09■■□□□ 1.13
COL6A1-203ENST00000466285 MYRFLQ96LU7 910 aa22.09■■□□□ 1.13
COL6A1-203ENST00000466285 CNTNAP3BQ96NU0 1288 aa22.09■■□□□ 1.13
COL6A1-203ENST00000466285 HHIPQ96QV1 700 aa22.09■■□□□ 1.13
COL6A1-203ENST00000466285 SYT15Q9BQS2 421 aa22.09■■□□□ 1.13
COL6A1-203ENST00000466285 CNTNAP3Q9BZ76 1288 aa22.09■■□□□ 1.13
COL6A1-203ENST00000466285 SMOC1Q9H4F8 434 aa22.09■■□□□ 1.13
COL6A1-203ENST00000466285 THG1LQ9NWX6 298 aaKnown RBP22.09■■□□□ 1.13
COL6A1-203ENST00000466285 GCNT4Q9P109 453 aa22.09■■□□□ 1.13
COL6A1-203ENST00000466285 MORC2Q9Y6X9 1032 aaPredicted RBP22.09■■□□□ 1.13
COL6A1-203ENST00000466285 PRR5-ARHGAP8B1AHC4 643 aa22.08■■□□□ 1.13
COL6A1-203ENST00000466285 TRDMT1O14717 391 aaKnown RBP22.08■■□□□ 1.13
COL6A1-203ENST00000466285 DDX6P26196 483 aaKnown RBP eCLIP22.08■■□□□ 1.13
COL6A1-203ENST00000466285 GJA4P35212 333 aa22.08■■□□□ 1.13
COL6A1-203ENST00000466285 CACNA2D1P54289 1103 aa22.08■■□□□ 1.13
COL6A1-203ENST00000466285 RBP5P82980 135 aa22.08■■□□□ 1.13
COL6A1-203ENST00000466285 ARHGAP8P85298 464 aa22.08■■□□□ 1.13
COL6A1-203ENST00000466285 MYL7Q01449 175 aa22.08■■□□□ 1.13
COL6A1-203ENST00000466285 SF3A2Q15428 464 aaKnown RBP22.08■■□□□ 1.13
COL6A1-203ENST00000466285 CFAP221Q4G0U5 840 aa22.08■■□□□ 1.13
COL6A1-203ENST00000466285 FAM171BQ6P995 826 aa22.08■■□□□ 1.13
COL6A1-203ENST00000466285 KBTBD6Q86V97 674 aa22.08■■□□□ 1.13
COL6A1-203ENST00000466285 SPATA2LQ8IUW3 424 aaPredicted RBP22.08■■□□□ 1.13
COL6A1-203ENST00000466285 ARL14EPQ8N8R7 260 aaPredicted RBP22.08■■□□□ 1.13
COL6A1-203ENST00000466285 LINC00301Q8NCQ3 95 aa22.08■■□□□ 1.13
COL6A1-203ENST00000466285 MRPL45Q9BRJ2 306 aaKnown RBP22.08■■□□□ 1.13
COL6A1-203ENST00000466285 TRIM9Q9C026 710 aa22.08■■□□□ 1.13
COL6A1-203ENST00000466285 KIF9Q9HAQ2 790 aa22.08■■□□□ 1.13
COL6A1-203ENST00000466285 HSPBP1Q9NZL4 362 aa22.08■■□□□ 1.13
COL6A1-203ENST00000466285 ACACBO00763 2458 aa22.08■■□□□ 1.13
COL6A1-203ENST00000466285 MYOFQ9NZM1 2061 aa22.08■■□□□ 1.12
COL6A1-203ENST00000466285 SCAMP3O14828 347 aaKnown RBP22.07■■□□□ 1.12
COL6A1-203ENST00000466285 TGFB1I1O43294 461 aa22.07■■□□□ 1.12
COL6A1-203ENST00000466285 LDHAP00338 332 aaKnown RBP22.07■■□□□ 1.12
COL6A1-203ENST00000466285 GALK1P51570 392 aa22.07■■□□□ 1.12
COL6A1-203ENST00000466285 ALCAMQ13740 583 aa22.07■■□□□ 1.12
COL6A1-203ENST00000466285 ZNF268Q14587 947 aaPredicted RBP22.07■■□□□ 1.12
COL6A1-203ENST00000466285 FOXD4L5Q5VV16 416 aaPredicted RBP22.07■■□□□ 1.12
COL6A1-203ENST00000466285 SHC4Q6S5L8 630 aa22.07■■□□□ 1.12
COL6A1-203ENST00000466285 EPM2AIP1Q7L775 607 aaPredicted RBP22.07■■□□□ 1.12
COL6A1-203ENST00000466285 CACTINQ8WUQ7 758 aaKnown RBP22.07■■□□□ 1.12
COL6A1-203ENST00000466285 FOXD4L4Q8WXT5 416 aaPredicted RBP22.07■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms