RNA–Protein interactions for RNA: ENST00000464168.5

USP4-208, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 601 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-208ENST00000464168 VPS37CA5D8V6 355 aaPredicted RBP24.3■■□□□ 1.48
USP4-208ENST00000464168 RPP40O75818 363 aaKnown RBP24.3■■□□□ 1.48
USP4-208ENST00000464168 GCNT3O95395 438 aa24.3■■□□□ 1.48
USP4-208ENST00000464168 GARTP22102 1010 aa24.3■■□□□ 1.48
USP4-208ENST00000464168 RAP1GAPP47736 663 aa24.3■■□□□ 1.48
USP4-208ENST00000464168 AMPD2Q01433 879 aa24.3■■□□□ 1.48
USP4-208ENST00000464168 PDGFRLQ15198 375 aa24.3■■□□□ 1.48
USP4-208ENST00000464168 CCDC142Q17RM4 750 aa24.3■■□□□ 1.48
USP4-208ENST00000464168 KBTBD6Q86V97 674 aa24.3■■□□□ 1.48
USP4-208ENST00000464168 OSTM1Q86WC4 334 aa24.3■■□□□ 1.48
USP4-208ENST00000464168 TRMT2BQ96GJ1 504 aaKnown RBP24.3■■□□□ 1.48
USP4-208ENST00000464168 ARRDC1-AS1Q9H2J1 176 aa24.3■■□□□ 1.48
USP4-208ENST00000464168 OLFML3Q9NRN5 406 aa24.3■■□□□ 1.48
USP4-208ENST00000464168 UXTQ9UBK9 157 aaPredicted RBP24.3■■□□□ 1.48
USP4-208ENST00000464168 SIX4Q9UIU6 781 aa24.3■■□□□ 1.48
USP4-208ENST00000464168 ITGA11Q9UKX5 1188 aa24.3■■□□□ 1.48
USP4-208ENST00000464168 PCDHB13Q9Y5F0 798 aa24.3■■□□□ 1.48
USP4-208ENST00000464168 DENND4CQ5VZ89 1909 aa24.29■■□□□ 1.48
USP4-208ENST00000464168 CEP295Q9C0D2 2601 aa24.29■■□□□ 1.48
USP4-208ENST00000464168 GOLGA8IPA6NC78 632 aa24.29■■□□□ 1.48
USP4-208ENST00000464168 GOLGA8JA6NMD2 632 aa24.29■■□□□ 1.48
USP4-208ENST00000464168 RNF40O75150 1001 aa24.29■■□□□ 1.48
USP4-208ENST00000464168 LDHAP00338 332 aaKnown RBP24.29■■□□□ 1.48
USP4-208ENST00000464168 MYL7Q01449 175 aa24.29■■□□□ 1.48
USP4-208ENST00000464168 SF3A2Q15428 464 aaKnown RBP24.29■■□□□ 1.48
USP4-208ENST00000464168 CCDC6Q16204 474 aa24.29■■□□□ 1.48
USP4-208ENST00000464168 SLC22A12Q96S37 553 aa24.29■■□□□ 1.48
USP4-208ENST00000464168 CYP2S1Q96SQ9 504 aa24.29■■□□□ 1.48
USP4-208ENST00000464168 CBWD1Q9BRT8 395 aa24.29■■□□□ 1.48
USP4-208ENST00000464168 FGFBP2Q9BYJ0 223 aa24.29■■□□□ 1.48
USP4-208ENST00000464168 PDE11AQ9HCR9 933 aa24.29■■□□□ 1.48
USP4-208ENST00000464168 SNX9Q9Y5X1 595 aa24.29■■□□□ 1.48
USP4-208ENST00000464168 ATG2BQ96BY7 2078 aa24.29■■□□□ 1.48
USP4-208ENST00000464168 GABRDO14764 452 aa24.28■■□□□ 1.48
USP4-208ENST00000464168 HCRTO43612 131 aa24.28■■□□□ 1.48
USP4-208ENST00000464168 KRT37O76014 449 aa24.28■■□□□ 1.48
USP4-208ENST00000464168 ZNF806P0C7X5 589 aa24.28■■□□□ 1.48
USP4-208ENST00000464168 DRD1P21728 446 aa24.28■■□□□ 1.48
USP4-208ENST00000464168 GJA4P35212 333 aa24.28■■□□□ 1.48
USP4-208ENST00000464168 RBP5P82980 135 aa24.28■■□□□ 1.48
USP4-208ENST00000464168 MTF1Q14872 753 aa24.28■■□□□ 1.48
USP4-208ENST00000464168 CFAP221Q4G0U5 840 aa24.28■■□□□ 1.48
USP4-208ENST00000464168 SYCP3Q8IZU3 236 aa24.28■■□□□ 1.48
USP4-208ENST00000464168 CAMKK1Q8N5S9 505 aa24.28■■□□□ 1.48
USP4-208ENST00000464168 SPATA18Q8TC71 538 aa24.28■■□□□ 1.48
USP4-208ENST00000464168 P2RY13Q9BPV8 354 aa24.28■■□□□ 1.48
USP4-208ENST00000464168 ECT2Q9H8V3 914 aa24.28■■□□□ 1.48
USP4-208ENST00000464168 UPF2Q9HAU5 1272 aaKnown RBP24.28■■□□□ 1.48
USP4-208ENST00000464168 LAMA1P25391 3075 aa24.28■■□□□ 1.48
USP4-208ENST00000464168 SPAG17Q6Q759 2223 aa24.27■■□□□ 1.48
USP4-208ENST00000464168 USP24Q9UPU5 2620 aa24.27■■□□□ 1.48
USP4-208ENST00000464168 FRMD3A2A2Y4 597 aa24.27■■□□□ 1.48
USP4-208ENST00000464168 EPN2O95208 641 aa24.27■■□□□ 1.48
USP4-208ENST00000464168 KRT19P08727 400 aa24.27■■□□□ 1.48
USP4-208ENST00000464168 CCDC192P0DO97 292 aa24.27■■□□□ 1.48
USP4-208ENST00000464168 IDEP14735 1019 aa24.27■■□□□ 1.48
USP4-208ENST00000464168 LHX1P48742 406 aa24.27■■□□□ 1.48
USP4-208ENST00000464168 FAM160A1Q05DH4 1040 aa24.27■■□□□ 1.48
USP4-208ENST00000464168 CUL4AQ13619 759 aa24.27■■□□□ 1.48
USP4-208ENST00000464168 ZNF77Q15935 545 aa24.27■■□□□ 1.48
USP4-208ENST00000464168 SOWAHAQ2M3V2 549 aa24.27■■□□□ 1.48
USP4-208ENST00000464168 FAM173BQ6P4H8 233 aa24.27■■□□□ 1.48
USP4-208ENST00000464168 ADGRF2Q8IZF7 708 aa24.27■■□□□ 1.48
USP4-208ENST00000464168 TOP6BLQ8N6T0 577 aa24.27■■□□□ 1.48
USP4-208ENST00000464168 EZH1Q92800 747 aaPredicted RBP24.27■■□□□ 1.48
USP4-208ENST00000464168 MTMR12Q9C0I1 747 aa24.27■■□□□ 1.48
USP4-208ENST00000464168 PCIF1Q9H4Z3 704 aa24.27■■□□□ 1.48
USP4-208ENST00000464168 TMEM206Q9H813 350 aa24.27■■□□□ 1.48
USP4-208ENST00000464168 TRPC7Q9HCX4 862 aa24.27■■□□□ 1.48
USP4-208ENST00000464168 RXFP3Q9NSD7 469 aa24.27■■□□□ 1.48
USP4-208ENST00000464168 DUS2Q9NX74 493 aaKnown RBP24.27■■□□□ 1.48
USP4-208ENST00000464168 AKAP3O75969 853 aa24.26■■□□□ 1.47
USP4-208ENST00000464168 USP17L7P0C7H9 530 aa24.26■■□□□ 1.47
USP4-208ENST00000464168 TXLNAP40222 546 aa24.26■■□□□ 1.47
USP4-208ENST00000464168 LIMK1P53667 647 aa24.26■■□□□ 1.47
USP4-208ENST00000464168 ALCAMQ13740 583 aa24.26■■□□□ 1.47
USP4-208ENST00000464168 AASDHQ4L235 1098 aaPredicted RBP24.26■■□□□ 1.47
USP4-208ENST00000464168 FAM171BQ6P995 826 aa24.26■■□□□ 1.47
USP4-208ENST00000464168 SPATA2LQ8IUW3 424 aaPredicted RBP24.26■■□□□ 1.47
USP4-208ENST00000464168 CPA6Q8N4T0 437 aa24.26■■□□□ 1.47
USP4-208ENST00000464168 OSCP1Q8WVF1 389 aa24.26■■□□□ 1.47
USP4-208ENST00000464168 FUBP3Q96I24 572 aaKnown RBP eCLIP24.26■■□□□ 1.47
USP4-208ENST00000464168 ZC3H10Q96K80 434 aaKnown RBP24.26■■□□□ 1.47
USP4-208ENST00000464168 PANK2Q9BZ23 570 aa24.26■■□□□ 1.47
USP4-208ENST00000464168 GCNT4Q9P109 453 aa24.26■■□□□ 1.47
USP4-208ENST00000464168 A0A087X0B3 334 aa24.25■■□□□ 1.47
USP4-208ENST00000464168 TRAV19A0A0A6YYK7 116 aa24.25■■□□□ 1.47
USP4-208ENST00000464168 TM4SF5O14894 197 aa24.25■■□□□ 1.47
USP4-208ENST00000464168 PCSK1P29120 753 aa24.25■■□□□ 1.47
USP4-208ENST00000464168 CEBPZQ03701 1054 aaKnown RBP24.25■■□□□ 1.47
USP4-208ENST00000464168 RESTQ13127 1097 aa24.25■■□□□ 1.47
USP4-208ENST00000464168 FBXO43Q4G163 708 aa24.25■■□□□ 1.47
USP4-208ENST00000464168 PLA2G2CQ5R387 149 aa24.25■■□□□ 1.47
USP4-208ENST00000464168 CCDC73Q6ZRK6 1079 aa24.25■■□□□ 1.47
USP4-208ENST00000464168 LIMS2Q7Z4I7 341 aa24.25■■□□□ 1.47
USP4-208ENST00000464168 ARL14EPQ8N8R7 260 aaPredicted RBP24.25■■□□□ 1.47
USP4-208ENST00000464168 NOC3LQ8WTT2 800 aaKnown RBP24.25■■□□□ 1.47
USP4-208ENST00000464168 DDX1Q92499 740 aaKnown RBP24.25■■□□□ 1.47
USP4-208ENST00000464168 HHIPQ96QV1 700 aa24.25■■□□□ 1.47
USP4-208ENST00000464168 PANK4Q9NVE7 773 aa24.25■■□□□ 1.47
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms