RNA–Protein interactions for RNA: ENST00000463007.5

HDAC4-208, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,158 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-208ENST00000463007 CHMP2BQ9UQN3 213 aa13.06□□□□□ -0.32
HDAC4-208ENST00000463007 C2CD2Q9Y426 696 aa13.06□□□□□ -0.32
HDAC4-208ENST00000463007 AFG3L2Q9Y4W6 797 aa13.06□□□□□ -0.32
HDAC4-208ENST00000463007 SPDYE16A6NNV3 312 aaPredicted RBP13.06□□□□□ -0.32
HDAC4-208ENST00000463007 C19orf81C9J6K1 198 aa13.06□□□□□ -0.32
HDAC4-208ENST00000463007 F5H423 210 aaPredicted RBP13.06□□□□□ -0.32
HDAC4-208ENST00000463007 STAM2O75886 525 aa13.06□□□□□ -0.32
HDAC4-208ENST00000463007 ZBTB7AO95365 584 aa13.06□□□□□ -0.32
HDAC4-208ENST00000463007 HMGCS2P54868 508 aa13.06□□□□□ -0.32
HDAC4-208ENST00000463007 SP2Q02086 613 aa13.06□□□□□ -0.32
HDAC4-208ENST00000463007 CYP24A1Q07973 514 aa13.06□□□□□ -0.32
HDAC4-208ENST00000463007 NR1H3Q13133 447 aa13.06□□□□□ -0.32
HDAC4-208ENST00000463007 ORC1Q13415 861 aa13.06□□□□□ -0.32
HDAC4-208ENST00000463007 SH3D19Q5HYK7 790 aa13.06□□□□□ -0.32
HDAC4-208ENST00000463007 ANKRD22Q5VYY1 191 aa13.06□□□□□ -0.32
HDAC4-208ENST00000463007 SLC30A9Q6PML9 568 aa13.06□□□□□ -0.32
HDAC4-208ENST00000463007 CLNKQ7Z7G1 428 aa13.06□□□□□ -0.32
HDAC4-208ENST00000463007 CCNJLQ8IV13 435 aa13.06□□□□□ -0.32
HDAC4-208ENST00000463007 C12orf50Q8NA57 414 aaPredicted RBP13.06□□□□□ -0.32
HDAC4-208ENST00000463007 PHC3Q8NDX5 983 aa13.06□□□□□ -0.32
HDAC4-208ENST00000463007 NSUN6Q8TEA1 469 aaKnown RBP13.06□□□□□ -0.32
HDAC4-208ENST00000463007 WRNIP1Q96S55 665 aa13.06□□□□□ -0.32
HDAC4-208ENST00000463007 CADM1Q9BY67 442 aaKnown RBP13.06□□□□□ -0.32
HDAC4-208ENST00000463007 AS3MTQ9HBK9 375 aa13.06□□□□□ -0.32
HDAC4-208ENST00000463007 GABBR1Q9UBS5 961 aa13.06□□□□□ -0.32
HDAC4-208ENST00000463007 HAUS5O94927 633 aa13.06□□□□□ -0.32
HDAC4-208ENST00000463007 ENO1P06733 434 aaKnown RBP13.06□□□□□ -0.32
HDAC4-208ENST00000463007 TROVE2P10155 538 aaKnown RBP eCLIP13.06□□□□□ -0.32
HDAC4-208ENST00000463007 ESRRAP11474 423 aaPredicted RBP13.06□□□□□ -0.32
HDAC4-208ENST00000463007 GNA15P30679 374 aa13.06□□□□□ -0.32
HDAC4-208ENST00000463007 ICAM3P32942 547 aa13.06□□□□□ -0.32
HDAC4-208ENST00000463007 MSS51Q4VC12 460 aa13.06□□□□□ -0.32
HDAC4-208ENST00000463007 CCDC33Q8N5R6 958 aa13.06□□□□□ -0.32
HDAC4-208ENST00000463007 TRPM4Q8TD43 1214 aa13.06□□□□□ -0.32
HDAC4-208ENST00000463007 C10orf82Q8WW14 230 aa13.06□□□□□ -0.32
HDAC4-208ENST00000463007 MECRQ9BV79 373 aa13.06□□□□□ -0.32
HDAC4-208ENST00000463007 SLC13A1Q9BZW2 595 aa13.06□□□□□ -0.32
HDAC4-208ENST00000463007 IGKV6D-21A0A0A0MT36 114 aa13.05□□□□□ -0.32
HDAC4-208ENST00000463007 A0A1B0GVG6 124 aa13.05□□□□□ -0.32
HDAC4-208ENST00000463007 FAM155BO75949 473 aa13.05□□□□□ -0.32
HDAC4-208ENST00000463007 GNAZP19086 355 aa13.05□□□□□ -0.32
HDAC4-208ENST00000463007 BGNP21810 368 aa13.05□□□□□ -0.32
HDAC4-208ENST00000463007 YARSP54577 528 aaKnown RBP13.05□□□□□ -0.32
HDAC4-208ENST00000463007 MOGSQ13724 837 aa13.05□□□□□ -0.32
HDAC4-208ENST00000463007 SGSM1Q2NKQ1 1148 aa13.05□□□□□ -0.32
HDAC4-208ENST00000463007 ZNF568Q3ZCX4 644 aa13.05□□□□□ -0.32
HDAC4-208ENST00000463007 ACSBG2Q5FVE4 666 aa13.05□□□□□ -0.32
HDAC4-208ENST00000463007 LIN9Q5TKA1 542 aa13.05□□□□□ -0.32
HDAC4-208ENST00000463007 NLRX1Q86UT6 975 aa13.05□□□□□ -0.32
HDAC4-208ENST00000463007 GRAMD1AQ96CP6 724 aa13.05□□□□□ -0.32
HDAC4-208ENST00000463007 JPH1Q9HDC5 661 aaPredicted RBP13.05□□□□□ -0.32
HDAC4-208ENST00000463007 EXOC7Q9UPT5 735 aa13.05□□□□□ -0.32
HDAC4-208ENST00000463007 STARD13Q9Y3M8 1113 aa13.05□□□□□ -0.32
HDAC4-208ENST00000463007 CENPFP49454 3210 aa13.05□□□□□ -0.32
HDAC4-208ENST00000463007 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP13.05□□□□□ -0.32
HDAC4-208ENST00000463007 FAM237BA0A1B0GVD1 139 aa13.05□□□□□ -0.32
HDAC4-208ENST00000463007 H3BRJ5 948 aa13.05□□□□□ -0.32
HDAC4-208ENST00000463007 AVILO75366 819 aa13.05□□□□□ -0.32
HDAC4-208ENST00000463007 PROSCO94903 275 aa13.05□□□□□ -0.32
HDAC4-208ENST00000463007 GARTP22102 1010 aa13.05□□□□□ -0.32
HDAC4-208ENST00000463007 GDF10P55107 478 aa13.05□□□□□ -0.32
HDAC4-208ENST00000463007 CCNG2Q16589 344 aa13.05□□□□□ -0.32
HDAC4-208ENST00000463007 PDK4Q16654 411 aa13.05□□□□□ -0.32
HDAC4-208ENST00000463007 ALYREFQ86V81 257 aaKnown RBP13.05□□□□□ -0.32
HDAC4-208ENST00000463007 APOBEC3FQ8IUX4 373 aaKnown RBP13.05□□□□□ -0.32
HDAC4-208ENST00000463007 FBXO27Q8NI29 283 aa13.05□□□□□ -0.32
HDAC4-208ENST00000463007 MORC4Q8TE76 937 aa13.05□□□□□ -0.32
HDAC4-208ENST00000463007 TEX13BQ9BXU2 312 aa13.05□□□□□ -0.32
HDAC4-208ENST00000463007 CPSF2Q9P2I0 782 aaKnown RBP13.05□□□□□ -0.32
HDAC4-208ENST00000463007 MAFBQ9Y5Q3 323 aaPredicted RBP13.05□□□□□ -0.32
HDAC4-208ENST00000463007 IKBKGQ9Y6K9 419 aa13.05□□□□□ -0.32
HDAC4-208ENST00000463007 DGAT1O75907 488 aa13.04□□□□□ -0.32
HDAC4-208ENST00000463007 ARFIP2P53365 341 aa13.04□□□□□ -0.32
HDAC4-208ENST00000463007 ACTR2P61160 394 aa13.04□□□□□ -0.32
HDAC4-208ENST00000463007 YWHAGP61981 247 aaKnown RBP eCLIP13.04□□□□□ -0.32
HDAC4-208ENST00000463007 MAMLD1Q13495 774 aa13.04□□□□□ -0.32
HDAC4-208ENST00000463007 HIF1AQ16665 826 aa13.04□□□□□ -0.32
HDAC4-208ENST00000463007 ZBTB41Q5SVQ8 909 aa13.04□□□□□ -0.32
HDAC4-208ENST00000463007 FAXCQ5TGI0 409 aa13.04□□□□□ -0.32
HDAC4-208ENST00000463007 ANGEL2Q5VTE6 544 aaKnown RBP13.04□□□□□ -0.32
HDAC4-208ENST00000463007 CFAP61Q8NHU2 1237 aa13.04□□□□□ -0.32
HDAC4-208ENST00000463007 ZNF516Q92618 1163 aa13.04□□□□□ -0.32
HDAC4-208ENST00000463007 ATP6V0A1Q93050 837 aa13.04□□□□□ -0.32
HDAC4-208ENST00000463007 HAPLN2Q9GZV7 340 aa13.04□□□□□ -0.32
HDAC4-208ENST00000463007 CYP26B1Q9NR63 512 aa13.04□□□□□ -0.32
HDAC4-208ENST00000463007 TCRBV7S3A2A0A539 114 aa13.04□□□□□ -0.32
HDAC4-208ENST00000463007 TBX10O75333 385 aa13.04□□□□□ -0.32
HDAC4-208ENST00000463007 USP1O94782 785 aa13.04□□□□□ -0.32
HDAC4-208ENST00000463007 PIGRP01833 764 aa13.04□□□□□ -0.32
HDAC4-208ENST00000463007 HLA-DRAP01903 254 aa13.04□□□□□ -0.32
HDAC4-208ENST00000463007 ATP6V1C1P21283 382 aa13.04□□□□□ -0.32
HDAC4-208ENST00000463007 HIRAP54198 1017 aaPredicted RBP13.04□□□□□ -0.32
HDAC4-208ENST00000463007 PRKCEQ02156 737 aa13.04□□□□□ -0.32
HDAC4-208ENST00000463007 FNBP1LQ5T0N5 605 aa13.04□□□□□ -0.32
HDAC4-208ENST00000463007 RINLQ6ZS11 566 aa13.04□□□□□ -0.32
HDAC4-208ENST00000463007 CENPUQ71F23 418 aa13.04□□□□□ -0.32
HDAC4-208ENST00000463007 ZCCHC9Q8N567 271 aaKnown RBP13.04□□□□□ -0.32
HDAC4-208ENST00000463007 DDX55Q8NHQ9 600 aaKnown RBP eCLIP13.04□□□□□ -0.32
HDAC4-208ENST00000463007 NRG4Q8WWG1 115 aa13.04□□□□□ -0.32
HDAC4-208ENST00000463007 PAFAH2Q99487 392 aa13.04□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 53.5 ms