RNA–Protein interactions for RNA: ENST00000462475.1

COL7A1-204, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 305 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-204ENST00000462475 PDILTQ8N807 584 aa17.29■□□□□ 0.36
COL7A1-204ENST00000462475 RTKNQ9BST9 563 aa17.29■□□□□ 0.36
COL7A1-204ENST00000462475 SEMA4GQ9NTN9 838 aa17.29■□□□□ 0.36
COL7A1-204ENST00000462475 MTMR6Q9Y217 621 aa17.29■□□□□ 0.36
COL7A1-204ENST00000462475 MORC2Q9Y6X9 1032 aaPredicted RBP17.29■□□□□ 0.36
COL7A1-204ENST00000462475 GABRDO14764 452 aa17.28■□□□□ 0.36
COL7A1-204ENST00000462475 LRP3O75074 770 aa17.28■□□□□ 0.36
COL7A1-204ENST00000462475 TMEM191BP0C7N4 346 aa17.28■□□□□ 0.36
COL7A1-204ENST00000462475 PXNP49023 591 aaPredicted RBP17.28■□□□□ 0.36
COL7A1-204ENST00000462475 RPL10AP62906 217 aaKnown RBP17.28■□□□□ 0.36
COL7A1-204ENST00000462475 RBP5P82980 135 aa17.28■□□□□ 0.36
COL7A1-204ENST00000462475 SLC39A14Q15043 492 aa17.28■□□□□ 0.36
COL7A1-204ENST00000462475 NAIF1Q69YI7 327 aaPredicted RBP17.28■□□□□ 0.36
COL7A1-204ENST00000462475 CEP68Q76N32 757 aa17.28■□□□□ 0.36
COL7A1-204ENST00000462475 GPD1LQ8N335 351 aa17.28■□□□□ 0.36
COL7A1-204ENST00000462475 FAM160A2Q8N612 972 aaPredicted RBP17.28■□□□□ 0.36
COL7A1-204ENST00000462475 TOP6BLQ8N6T0 577 aa17.28■□□□□ 0.36
COL7A1-204ENST00000462475 OR5B17Q8NGF7 314 aa17.28■□□□□ 0.36
COL7A1-204ENST00000462475 HPS3Q969F9 1004 aa17.28■□□□□ 0.36
COL7A1-204ENST00000462475 TRMT2BQ96GJ1 504 aaKnown RBP17.28■□□□□ 0.36
COL7A1-204ENST00000462475 SLC22A12Q96S37 553 aa17.28■□□□□ 0.36
COL7A1-204ENST00000462475 TRPC7Q9HCX4 862 aa17.28■□□□□ 0.36
COL7A1-204ENST00000462475 LOC105378220A0A1B0GUY1 285 aaPredicted RBP17.27■□□□□ 0.36
COL7A1-204ENST00000462475 TRDMT1O14717 391 aaKnown RBP17.27■□□□□ 0.36
COL7A1-204ENST00000462475 EGFP01133 1207 aa17.27■□□□□ 0.36
COL7A1-204ENST00000462475 GRSF1Q12849 480 aaKnown RBP eCLIP17.27■□□□□ 0.36
COL7A1-204ENST00000462475 ZNF268Q14587 947 aaPredicted RBP17.27■□□□□ 0.36
COL7A1-204ENST00000462475 MTF1Q14872 753 aa17.27■□□□□ 0.36
COL7A1-204ENST00000462475 SOWAHAQ2M3V2 549 aa17.27■□□□□ 0.36
COL7A1-204ENST00000462475 CFAP221Q4G0U5 840 aa17.27■□□□□ 0.36
COL7A1-204ENST00000462475 PRR23CQ6ZRP0 262 aa17.27■□□□□ 0.36
COL7A1-204ENST00000462475 CBWD2Q8IUF1 395 aa17.27■□□□□ 0.36
COL7A1-204ENST00000462475 SPATA2LQ8IUW3 424 aaPredicted RBP17.27■□□□□ 0.36
COL7A1-204ENST00000462475 CCDC65Q8IXS2 484 aa17.27■□□□□ 0.36
COL7A1-204ENST00000462475 SPATA18Q8TC71 538 aa17.27■□□□□ 0.36
COL7A1-204ENST00000462475 MYRFLQ96LU7 910 aa17.27■□□□□ 0.36
COL7A1-204ENST00000462475 TMEM206Q9H813 350 aa17.27■□□□□ 0.36
COL7A1-204ENST00000462475 FBRSL1Q9HCM7 1045 aaKnown RBP17.27■□□□□ 0.36
COL7A1-204ENST00000462475 FOXD4L1Q9NU39 408 aa17.27■□□□□ 0.36
COL7A1-204ENST00000462475 INTS13Q9NVM9 706 aa17.27■□□□□ 0.36
COL7A1-204ENST00000462475 POLR3BQ9NW08 1133 aaPredicted RBP17.27■□□□□ 0.36
COL7A1-204ENST00000462475 UXTQ9UBK9 157 aaPredicted RBP17.27■□□□□ 0.36
COL7A1-204ENST00000462475 OBSL1O75147 1896 aa17.27■□□□□ 0.35
COL7A1-204ENST00000462475 SOBPA7XYQ1 873 aa17.26■□□□□ 0.35
COL7A1-204ENST00000462475 ATP2C2O75185 946 aa17.26■□□□□ 0.35
COL7A1-204ENST00000462475 PCSK1P29120 753 aa17.26■□□□□ 0.35
COL7A1-204ENST00000462475 LHX1P48742 406 aa17.26■□□□□ 0.35
COL7A1-204ENST00000462475 PSMC1P62191 440 aaKnown RBP17.26■□□□□ 0.35
COL7A1-204ENST00000462475 USP4Q13107 963 aa17.26■□□□□ 0.35
COL7A1-204ENST00000462475 ZNF77Q15935 545 aa17.26■□□□□ 0.35
COL7A1-204ENST00000462475 CSRP2Q16527 193 aa17.26■□□□□ 0.35
COL7A1-204ENST00000462475 CC2D1AQ6P1N0 951 aaPredicted RBP17.26■□□□□ 0.35
COL7A1-204ENST00000462475 SCN4BQ8IWT1 228 aa17.26■□□□□ 0.35
COL7A1-204ENST00000462475 TTC16Q8NEE8 873 aa17.26■□□□□ 0.35
COL7A1-204ENST00000462475 NETO1Q8TDF5 533 aa17.26■□□□□ 0.35
COL7A1-204ENST00000462475 KBTBD7Q8WVZ9 684 aa17.26■□□□□ 0.35
COL7A1-204ENST00000462475 MYLPFQ96A32 169 aa17.26■□□□□ 0.35
COL7A1-204ENST00000462475 ANKRD36BP1Q96IX9 119 aa17.26■□□□□ 0.35
COL7A1-204ENST00000462475 CYP2S1Q96SQ9 504 aa17.26■□□□□ 0.35
COL7A1-204ENST00000462475 SLC30A4O14863 429 aa17.25■□□□□ 0.35
COL7A1-204ENST00000462475 GDF9O60383 454 aa17.25■□□□□ 0.35
COL7A1-204ENST00000462475 RNF40O75150 1001 aa17.25■□□□□ 0.35
COL7A1-204ENST00000462475 CKMP06732 381 aa17.25■□□□□ 0.35
COL7A1-204ENST00000462475 GJA4P35212 333 aa17.25■□□□□ 0.35
COL7A1-204ENST00000462475 HOXD13P35453 343 aa17.25■□□□□ 0.35
COL7A1-204ENST00000462475 NASPP49321 788 aaPredicted RBP17.25■□□□□ 0.35
COL7A1-204ENST00000462475 FAM160A1Q05DH4 1040 aa17.25■□□□□ 0.35
COL7A1-204ENST00000462475 PDGFRLQ15198 375 aa17.25■□□□□ 0.35
COL7A1-204ENST00000462475 E2F4Q16254 413 aa17.25■□□□□ 0.35
COL7A1-204ENST00000462475 FAM171BQ6P995 826 aa17.25■□□□□ 0.35
COL7A1-204ENST00000462475 LIMS2Q7Z4I7 341 aa17.25■□□□□ 0.35
COL7A1-204ENST00000462475 INTS4Q96HW7 963 aaKnown RBP17.25■□□□□ 0.35
COL7A1-204ENST00000462475 FUBP3Q96I24 572 aaKnown RBP eCLIP17.25■□□□□ 0.35
COL7A1-204ENST00000462475 SYT15Q9BQS2 421 aa17.25■□□□□ 0.35
COL7A1-204ENST00000462475 ECT2Q9H8V3 914 aa17.25■□□□□ 0.35
COL7A1-204ENST00000462475 CRTAC1Q9NQ79 661 aa17.25■□□□□ 0.35
COL7A1-204ENST00000462475 WNT6Q9Y6F9 365 aa17.25■□□□□ 0.35
COL7A1-204ENST00000462475 DENND4CQ5VZ89 1909 aa17.25■□□□□ 0.35
COL7A1-204ENST00000462475 TRAV19A0A0A6YYK7 116 aa17.24■□□□□ 0.35
COL7A1-204ENST00000462475 C2orf78A6NCI8 922 aa17.24■□□□□ 0.35
COL7A1-204ENST00000462475 KIAA0391O15091 583 aaKnown RBP17.24■□□□□ 0.35
COL7A1-204ENST00000462475 LMO2P25791 158 aa17.24■□□□□ 0.35
COL7A1-204ENST00000462475 MAGEA11P43364 429 aa17.24■□□□□ 0.35
COL7A1-204ENST00000462475 GALK1P51570 392 aa17.24■□□□□ 0.35
COL7A1-204ENST00000462475 MYO1EQ12965 1108 aa17.24■□□□□ 0.35
COL7A1-204ENST00000462475 STK38Q15208 465 aa17.24■□□□□ 0.35
COL7A1-204ENST00000462475 CPA6Q8N4T0 437 aa17.24■□□□□ 0.35
COL7A1-204ENST00000462475 LINC00301Q8NCQ3 95 aa17.24■□□□□ 0.35
COL7A1-204ENST00000462475 OSCP1Q8WVF1 389 aa17.24■□□□□ 0.35
COL7A1-204ENST00000462475 GAB3Q8WWW8 586 aa17.24■□□□□ 0.35
COL7A1-204ENST00000462475 EZH1Q92800 747 aaPredicted RBP17.24■□□□□ 0.35
COL7A1-204ENST00000462475 HPDLQ96IR7 371 aa17.24■□□□□ 0.35
COL7A1-204ENST00000462475 CNTNAP3BQ96NU0 1288 aa17.24■□□□□ 0.35
COL7A1-204ENST00000462475 P2RY13Q9BPV8 354 aa17.24■□□□□ 0.35
COL7A1-204ENST00000462475 CNTNAP3Q9BZ76 1288 aa17.24■□□□□ 0.35
COL7A1-204ENST00000462475 TRIM9Q9C026 710 aa17.24■□□□□ 0.35
COL7A1-204ENST00000462475 TNMDQ9H2S6 317 aa17.24■□□□□ 0.35
COL7A1-204ENST00000462475 ZSCAN16Q9H4T2 348 aaPredicted RBP17.24■□□□□ 0.35
COL7A1-204ENST00000462475 DUS2Q9NX74 493 aaKnown RBP17.24■□□□□ 0.35
COL7A1-204ENST00000462475 HSPBP1Q9NZL4 362 aa17.24■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms