RNA–Protein interactions for RNA: ENST00000460696.1

NPHP4-204, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 3,967 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-204ENST00000460696 SCYL1Q96KG9 808 aa12.2□□□□□ -0.46
NPHP4-204ENST00000460696 RNF19AQ9NV58 838 aa12.2□□□□□ -0.46
NPHP4-204ENST00000460696 PSMC3IPQ9P2W1 217 aaPredicted RBP12.2□□□□□ -0.46
NPHP4-204ENST00000460696 ZFP69BQ9UJL9 534 aa12.2□□□□□ -0.46
NPHP4-204ENST00000460696 G3BP2Q9UN86 482 aaKnown RBP12.2□□□□□ -0.46
NPHP4-204ENST00000460696 MYH1P12882 1939 aa12.19□□□□□ -0.46
NPHP4-204ENST00000460696 ZMYM2Q9UBW7 1377 aa12.19□□□□□ -0.46
NPHP4-204ENST00000460696 STAG3L1P0CL83 205 aa12.19□□□□□ -0.46
NPHP4-204ENST00000460696 KRT4P19013 534 aa12.19□□□□□ -0.46
NPHP4-204ENST00000460696 SESN2P58004 480 aaPredicted RBP12.19□□□□□ -0.46
NPHP4-204ENST00000460696 LVRNQ6Q4G3 990 aa12.19□□□□□ -0.46
NPHP4-204ENST00000460696 BRSK2Q8IWQ3 736 aa12.19□□□□□ -0.46
NPHP4-204ENST00000460696 GCOM2Q9BZD3 368 aaPredicted RBP12.19□□□□□ -0.46
NPHP4-204ENST00000460696 CD248Q9HCU0 757 aa12.19□□□□□ -0.46
NPHP4-204ENST00000460696 KCNH4Q9UQ05 1017 aa12.19□□□□□ -0.46
NPHP4-204ENST00000460696 PIN4Q9Y237 131 aaKnown RBP12.19□□□□□ -0.46
NPHP4-204ENST00000460696 XIRP1Q702N8 1843 aaKnown RBP12.19□□□□□ -0.46
NPHP4-204ENST00000460696 KRT38O76015 456 aa12.19□□□□□ -0.46
NPHP4-204ENST00000460696 CHKAP35790 457 aa12.19□□□□□ -0.46
NPHP4-204ENST00000460696 SCTRP47872 440 aa12.19□□□□□ -0.46
NPHP4-204ENST00000460696 OAZ1P54368 228 aa12.19□□□□□ -0.46
NPHP4-204ENST00000460696 TAS2R40P59535 323 aa12.19□□□□□ -0.46
NPHP4-204ENST00000460696 MAMLD1Q13495 774 aa12.19□□□□□ -0.46
NPHP4-204ENST00000460696 PRAMEF19Q5SWL8 479 aa12.19□□□□□ -0.46
NPHP4-204ENST00000460696 TTC27Q6P3X3 843 aa12.19□□□□□ -0.46
NPHP4-204ENST00000460696 RAPH1Q70E73 1250 aa12.19□□□□□ -0.46
NPHP4-204ENST00000460696 ARMCX2Q7L311 632 aa12.19□□□□□ -0.46
NPHP4-204ENST00000460696 ACOT1Q86TX2 421 aa12.19□□□□□ -0.46
NPHP4-204ENST00000460696 PGM2Q96G03 612 aa12.19□□□□□ -0.46
NPHP4-204ENST00000460696 MFSD14AQ96MC6 490 aa12.19□□□□□ -0.46
NPHP4-204ENST00000460696 NINJ2Q9NZG7 142 aa12.19□□□□□ -0.46
NPHP4-204ENST00000460696 EIF4E1BA6NMX2 242 aaKnown RBP12.19□□□□□ -0.46
NPHP4-204ENST00000460696 SPDYE16A6NNV3 312 aaPredicted RBP12.19□□□□□ -0.46
NPHP4-204ENST00000460696 APOL1O14791 398 aa12.19□□□□□ -0.46
NPHP4-204ENST00000460696 DHX15O43143 795 aaKnown RBP12.19□□□□□ -0.46
NPHP4-204ENST00000460696 ASAP2O43150 1006 aa12.19□□□□□ -0.46
NPHP4-204ENST00000460696 PECAM1P16284 738 aaPredicted RBP12.19□□□□□ -0.46
NPHP4-204ENST00000460696 SLC12A2P55011 1212 aa12.19□□□□□ -0.46
NPHP4-204ENST00000460696 ITKQ08881 620 aa12.19□□□□□ -0.46
NPHP4-204ENST00000460696 AP1B1Q10567 949 aa12.19□□□□□ -0.46
NPHP4-204ENST00000460696 CAPSQ13938 189 aa12.19□□□□□ -0.46
NPHP4-204ENST00000460696 KIZQ2M2Z5 673 aa12.19□□□□□ -0.46
NPHP4-204ENST00000460696 DSTYKQ6XUX3 929 aa12.19□□□□□ -0.46
NPHP4-204ENST00000460696 SENP1Q9P0U3 644 aa12.19□□□□□ -0.46
NPHP4-204ENST00000460696 KLHL8Q9P2G9 620 aaPredicted RBP12.19□□□□□ -0.46
NPHP4-204ENST00000460696 USP2O75604 605 aaPredicted RBP12.18□□□□□ -0.46
NPHP4-204ENST00000460696 IL18RAPO95256 599 aa12.18□□□□□ -0.46
NPHP4-204ENST00000460696 GCLCP48506 637 aaPredicted RBP12.18□□□□□ -0.46
NPHP4-204ENST00000460696 RNASELQ05823 741 aaKnown RBP12.18□□□□□ -0.46
NPHP4-204ENST00000460696 NXNQ6DKJ4 435 aa12.18□□□□□ -0.46
NPHP4-204ENST00000460696 ZNF572Q7Z3I7 529 aaPredicted RBP12.18□□□□□ -0.46
NPHP4-204ENST00000460696 N4BP2L2Q92802 583 aaPredicted RBP12.18□□□□□ -0.46
NPHP4-204ENST00000460696 KLK14Q9P0G3 267 aa12.18□□□□□ -0.46
NPHP4-204ENST00000460696 ZC3H7BQ9UGR2 993 aaKnown RBP12.18□□□□□ -0.46
NPHP4-204ENST00000460696 GH1P01241 217 aa12.18□□□□□ -0.46
NPHP4-204ENST00000460696 RARBP10826 455 aa12.18□□□□□ -0.46
NPHP4-204ENST00000460696 INSRRP14616 1297 aa12.18□□□□□ -0.46
NPHP4-204ENST00000460696 CHRNB2P17787 502 aa12.18□□□□□ -0.46
NPHP4-204ENST00000460696 GPD1P21695 349 aa12.18□□□□□ -0.46
NPHP4-204ENST00000460696 ARFIP2P53365 341 aa12.18□□□□□ -0.46
NPHP4-204ENST00000460696 PTPN11Q06124 597 aaPredicted RBP12.18□□□□□ -0.46
NPHP4-204ENST00000460696 OVGP1Q12889 678 aa12.18□□□□□ -0.46
NPHP4-204ENST00000460696 AUHQ13825 339 aaKnown RBP12.18□□□□□ -0.46
NPHP4-204ENST00000460696 OR6J1Q8NGC5 347 aa12.18□□□□□ -0.46
NPHP4-204ENST00000460696 ATXN7L3BQ96GX2 97 aa12.18□□□□□ -0.46
NPHP4-204ENST00000460696 AGAP3Q96P47 875 aa12.18□□□□□ -0.46
NPHP4-204ENST00000460696 FOXP3Q9BZS1 431 aa12.18□□□□□ -0.46
NPHP4-204ENST00000460696 RSAD1Q9HA92 442 aa12.18□□□□□ -0.46
NPHP4-204ENST00000460696 R3HDM2Q9Y2K5 976 aaKnown RBP12.18□□□□□ -0.46
NPHP4-204ENST00000460696 MAGEB2O15479 319 aa12.18□□□□□ -0.46
NPHP4-204ENST00000460696 CTSHP09668 335 aa12.18□□□□□ -0.46
NPHP4-204ENST00000460696 SSTR1P30872 391 aa12.18□□□□□ -0.46
NPHP4-204ENST00000460696 DRG2P55039 364 aaKnown RBP12.18□□□□□ -0.46
NPHP4-204ENST00000460696 GJC2Q5T442 439 aaPredicted RBP12.18□□□□□ -0.46
NPHP4-204ENST00000460696 PPIL6Q8IXY8 311 aa12.18□□□□□ -0.46
NPHP4-204ENST00000460696 PLEKHO2Q8TD55 490 aa12.18□□□□□ -0.46
NPHP4-204ENST00000460696 XPNPEP1Q9NQW7 623 aa12.18□□□□□ -0.46
NPHP4-204ENST00000460696 MARCOQ9UEW3 520 aaPredicted RBP12.18□□□□□ -0.46
NPHP4-204ENST00000460696 SMG5Q9UPR3 1016 aaKnown RBP12.18□□□□□ -0.46
NPHP4-204ENST00000460696 ZNF536O15090 1300 aa12.17□□□□□ -0.46
NPHP4-204ENST00000460696 UMODL1Q5DID0 1318 aa12.17□□□□□ -0.46
NPHP4-204ENST00000460696 SPATA31C2B4DYI2 1134 aa12.17□□□□□ -0.46
NPHP4-204ENST00000460696 GYG2O15488 501 aa12.17□□□□□ -0.46
NPHP4-204ENST00000460696 UBOX5O94941 541 aa12.17□□□□□ -0.46
NPHP4-204ENST00000460696 KCNA2P16389 499 aa12.17□□□□□ -0.46
NPHP4-204ENST00000460696 LBX1P52954 281 aa12.17□□□□□ -0.46
NPHP4-204ENST00000460696 NOMO3P69849 1222 aa12.17□□□□□ -0.46
NPHP4-204ENST00000460696 GOLGA7BQ2TAP0 167 aa12.17□□□□□ -0.46
NPHP4-204ENST00000460696 CYB5D1Q6P9G0 228 aa12.17□□□□□ -0.46
NPHP4-204ENST00000460696 ABHD15Q6UXT9 468 aa12.17□□□□□ -0.46
NPHP4-204ENST00000460696 ZPBP2Q6X784 338 aa12.17□□□□□ -0.46
NPHP4-204ENST00000460696 FBXO36Q8NEA4 188 aa12.17□□□□□ -0.46
NPHP4-204ENST00000460696 AFG1LQ8WV93 481 aa12.17□□□□□ -0.46
NPHP4-204ENST00000460696 GRAMD1AQ96CP6 724 aa12.17□□□□□ -0.46
NPHP4-204ENST00000460696 ZBED2Q9BTP6 218 aa12.17□□□□□ -0.46
NPHP4-204ENST00000460696 VPS11Q9H270 941 aa12.17□□□□□ -0.46
NPHP4-204ENST00000460696 NOCTQ9UK39 431 aaKnown RBP12.17□□□□□ -0.46
NPHP4-204ENST00000460696 PTPRZ1P23471 2315 aaPredicted RBP12.17□□□□□ -0.46
NPHP4-204ENST00000460696 MYH11P35749 1972 aa12.17□□□□□ -0.46
NPHP4-204ENST00000460696 FSCN2O14926 492 aa12.17□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms