RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 RAPGEF4Q8WZA2 1011 aa5.11□□□□□ -1.59
CCDC88A-209ENST00000456975 ZKSCAN4Q969J2 545 aaPredicted RBP5.11□□□□□ -1.59
CCDC88A-209ENST00000456975 TBCBQ99426 244 aa5.11□□□□□ -1.59
CCDC88A-209ENST00000456975 MS4A5Q9H3V2 200 aa5.11□□□□□ -1.59
CCDC88A-209ENST00000456975 MROH8Q9H579 483 aa5.11□□□□□ -1.59
CCDC88A-209ENST00000456975 GP6Q9HCN6 339 aa5.11□□□□□ -1.59
CCDC88A-209ENST00000456975 RRN3Q9NYV6 651 aa5.11□□□□□ -1.59
CCDC88A-209ENST00000456975 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP5.11□□□□□ -1.59
CCDC88A-209ENST00000456975 WHRNQ9P202 907 aa5.11□□□□□ -1.59
CCDC88A-209ENST00000456975 DDX19BQ9UMR2 479 aa5.11□□□□□ -1.59
CCDC88A-209ENST00000456975 CLEC4AQ9UMR7 237 aa5.11□□□□□ -1.59
CCDC88A-209ENST00000456975 PHTF1Q9UMS5 762 aa5.11□□□□□ -1.59
CCDC88A-209ENST00000456975 DAGLAQ9Y4D2 1042 aa5.11□□□□□ -1.59
CCDC88A-209ENST00000456975 SPEF1Q9Y4P9 236 aa5.11□□□□□ -1.59
CCDC88A-209ENST00000456975 SLC4A7Q9Y6M7 1214 aa5.11□□□□□ -1.59
CCDC88A-209ENST00000456975 C10orf71Q711Q0 1435 aa5.1□□□□□ -1.59
CCDC88A-209ENST00000456975 MYBBP1AQ9BQG0 1328 aaKnown RBP5.1□□□□□ -1.59
CCDC88A-209ENST00000456975 GOLGA8IPA6NC78 632 aa5.1□□□□□ -1.59
CCDC88A-209ENST00000456975 A6NNZ2 444 aa5.1□□□□□ -1.59
CCDC88A-209ENST00000456975 CAPN14A8MX76 684 aa5.1□□□□□ -1.59
CCDC88A-209ENST00000456975 KRIT1O00522 736 aa5.1□□□□□ -1.59
CCDC88A-209ENST00000456975 FSCN2O14926 492 aa5.1□□□□□ -1.59
CCDC88A-209ENST00000456975 RIPK2O43353 540 aa5.1□□□□□ -1.59
CCDC88A-209ENST00000456975 AOC2O75106 756 aa5.1□□□□□ -1.59
CCDC88A-209ENST00000456975 H2AFYO75367 372 aaKnown RBP5.1□□□□□ -1.59
CCDC88A-209ENST00000456975 LTFP02788 710 aa5.1□□□□□ -1.59
CCDC88A-209ENST00000456975 RHOXF2BP0C7M4 288 aa5.1□□□□□ -1.59
CCDC88A-209ENST00000456975 EPB41P11171 864 aaKnown RBP5.1□□□□□ -1.59
CCDC88A-209ENST00000456975 EEF2P13639 858 aaKnown RBP5.1□□□□□ -1.59
CCDC88A-209ENST00000456975 STMN1P16949 149 aa5.1□□□□□ -1.59
CCDC88A-209ENST00000456975 S100A1P23297 94 aa5.1□□□□□ -1.59
CCDC88A-209ENST00000456975 MLH1P40692 756 aa5.1□□□□□ -1.59
CCDC88A-209ENST00000456975 CBX5P45973 191 aa5.1□□□□□ -1.59
CCDC88A-209ENST00000456975 CLCN4P51793 760 aa5.1□□□□□ -1.59
CCDC88A-209ENST00000456975 SCAND1P57086 179 aa5.1□□□□□ -1.59
CCDC88A-209ENST00000456975 NLRP5P59047 1200 aa5.1□□□□□ -1.59
CCDC88A-209ENST00000456975 ZNF445P59923 1031 aa5.1□□□□□ -1.59
CCDC88A-209ENST00000456975 MRPS5P82675 430 aaKnown RBP5.1□□□□□ -1.59
CCDC88A-209ENST00000456975 MPP1Q00013 466 aa5.1□□□□□ -1.59
CCDC88A-209ENST00000456975 KDSRQ06136 332 aa5.1□□□□□ -1.59
CCDC88A-209ENST00000456975 E2F2Q14209 437 aa5.1□□□□□ -1.59
CCDC88A-209ENST00000456975 DPY19L1Q2PZI1 675 aa5.1□□□□□ -1.59
CCDC88A-209ENST00000456975 MMEL1Q495T6 779 aa5.1□□□□□ -1.59
CCDC88A-209ENST00000456975 ZNF362Q5T0B9 420 aaPredicted RBP5.1□□□□□ -1.59
CCDC88A-209ENST00000456975 ARHGAP36Q6ZRI8 547 aa5.1□□□□□ -1.59
CCDC88A-209ENST00000456975 TTLL7Q6ZT98 887 aa5.1□□□□□ -1.59
CCDC88A-209ENST00000456975 GATAD2AQ86YP4 633 aa5.1□□□□□ -1.59
CCDC88A-209ENST00000456975 ZNF397Q8NF99 534 aaPredicted RBP5.1□□□□□ -1.59
CCDC88A-209ENST00000456975 FBXO30Q8TB52 745 aa5.1□□□□□ -1.59
CCDC88A-209ENST00000456975 SSH3Q8TE77 659 aa5.1□□□□□ -1.59
CCDC88A-209ENST00000456975 PEX13Q92968 403 aa5.1□□□□□ -1.59
CCDC88A-209ENST00000456975 ATP6V1G3Q96LB4 118 aa5.1□□□□□ -1.59
CCDC88A-209ENST00000456975 HS6ST2Q96MM7 605 aa5.1□□□□□ -1.59
CCDC88A-209ENST00000456975 PRPF18Q99633 342 aaKnown RBP5.1□□□□□ -1.59
CCDC88A-209ENST00000456975 RHOXF2Q9BQY4 288 aa5.1□□□□□ -1.59
CCDC88A-209ENST00000456975 PI4K2AQ9BTU6 479 aa5.1□□□□□ -1.59
CCDC88A-209ENST00000456975 FSD1Q9BTV5 496 aa5.1□□□□□ -1.59
CCDC88A-209ENST00000456975 API5Q9BZZ5 524 aaKnown RBP5.1□□□□□ -1.59
CCDC88A-209ENST00000456975 ADNPQ9H2P0 1102 aa5.1□□□□□ -1.59
CCDC88A-209ENST00000456975 TRPM5Q9NZQ8 1165 aa5.1□□□□□ -1.59
CCDC88A-209ENST00000456975 RCAN3Q9UKA8 241 aa5.1□□□□□ -1.59
CCDC88A-209ENST00000456975 MINPP1Q9UNW1 487 aa5.1□□□□□ -1.59
CCDC88A-209ENST00000456975 C15orf41Q9Y2V0 281 aa5.1□□□□□ -1.59
CCDC88A-209ENST00000456975 VIRMAQ69YN4 1812 aaKnown RBP5.1□□□□□ -1.59
CCDC88A-209ENST00000456975 C4AP0C0L4 1744 aa5.1□□□□□ -1.59
CCDC88A-209ENST00000456975 ERICH2A1L162 156 aa5.09□□□□□ -1.59
CCDC88A-209ENST00000456975 ZSCAN5CA6NGD5 496 aaPredicted RBP5.09□□□□□ -1.59
CCDC88A-209ENST00000456975 MASP2O00187 686 aa5.09□□□□□ -1.59
CCDC88A-209ENST00000456975 CBX4O00257 560 aa5.09□□□□□ -1.59
CCDC88A-209ENST00000456975 RANBP6O60518 1105 aaKnown RBP5.09□□□□□ -1.59
CCDC88A-209ENST00000456975 CBFA2T3O75081 653 aa5.09□□□□□ -1.59
CCDC88A-209ENST00000456975 TMCC1O94876 653 aa5.09□□□□□ -1.59
CCDC88A-209ENST00000456975 HEXBP07686 556 aa5.09□□□□□ -1.59
CCDC88A-209ENST00000456975 GLI1P08151 1106 aa5.09□□□□□ -1.59
CCDC88A-209ENST00000456975 MX2P20592 715 aa5.09□□□□□ -1.59
CCDC88A-209ENST00000456975 PTGS2P35354 604 aa5.09□□□□□ -1.59
CCDC88A-209ENST00000456975 PSMC2P35998 433 aaKnown RBP5.09□□□□□ -1.59
CCDC88A-209ENST00000456975 RECQLP46063 649 aaPredicted RBP5.09□□□□□ -1.59
CCDC88A-209ENST00000456975 RPP38P78345 283 aaKnown RBP5.09□□□□□ -1.59
CCDC88A-209ENST00000456975 COG7P83436 770 aa5.09□□□□□ -1.59
CCDC88A-209ENST00000456975 ZBTB16Q05516 673 aa5.09□□□□□ -1.59
CCDC88A-209ENST00000456975 KLF1Q13351 362 aaPredicted RBP5.09□□□□□ -1.59
CCDC88A-209ENST00000456975 SNW1Q13573 536 aaKnown RBP5.09□□□□□ -1.59
CCDC88A-209ENST00000456975 AUHQ13825 339 aaKnown RBP5.09□□□□□ -1.59
CCDC88A-209ENST00000456975 GBX1Q14549 363 aa5.09□□□□□ -1.59
CCDC88A-209ENST00000456975 STK38Q15208 465 aa5.09□□□□□ -1.59
CCDC88A-209ENST00000456975 TRAPPC3LQ5T215 181 aa5.09□□□□□ -1.59
CCDC88A-209ENST00000456975 RBM20Q5T481 1227 aaKnown RBP5.09□□□□□ -1.59
CCDC88A-209ENST00000456975 OR7E24Q6IFN5 339 aa5.09□□□□□ -1.59
CCDC88A-209ENST00000456975 SULT6B1Q6IMI4 303 aa5.09□□□□□ -1.59
CCDC88A-209ENST00000456975 LRSAM1Q6UWE0 723 aa5.09□□□□□ -1.59
CCDC88A-209ENST00000456975 ZNF704Q6ZNC4 412 aaPredicted RBP5.09□□□□□ -1.59
CCDC88A-209ENST00000456975 TOGARAM2Q6ZUX3 1019 aa5.09□□□□□ -1.59
CCDC88A-209ENST00000456975 PLEKHM3Q6ZWE6 761 aa5.09□□□□□ -1.59
CCDC88A-209ENST00000456975 MTDHQ86UE4 582 aaKnown RBP5.09□□□□□ -1.59
CCDC88A-209ENST00000456975 CD302Q8IX05 232 aa5.09□□□□□ -1.59
CCDC88A-209ENST00000456975 MRPL41Q8IXM3 137 aaKnown RBP5.09□□□□□ -1.59
CCDC88A-209ENST00000456975 DYDC1Q8WWB3 177 aa5.09□□□□□ -1.59
CCDC88A-209ENST00000456975 KAT2BQ92831 832 aa5.09□□□□□ -1.59
CCDC88A-209ENST00000456975 HSPBAP1Q96EW2 488 aa5.09□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 62.8 ms