RNA–Protein interactions for RNA: ENST00000454569.5

SCN9A-205, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,585 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-205ENST00000454569 PATJQ8NI35 1801 aa11.67□□□□□ -0.54
SCN9A-205ENST00000454569 LINC01553A4QN01 128 aa11.67□□□□□ -0.54
SCN9A-205ENST00000454569 O00370 1275 aa11.67□□□□□ -0.54
SCN9A-205ENST00000454569 ADAM12O43184 909 aa11.67□□□□□ -0.54
SCN9A-205ENST00000454569 MICAL2O94851 1124 aa11.67□□□□□ -0.54
SCN9A-205ENST00000454569 CYP1A1P04798 512 aaPredicted RBP11.67□□□□□ -0.54
SCN9A-205ENST00000454569 VDRP11473 427 aa11.67□□□□□ -0.54
SCN9A-205ENST00000454569 UNGP13051 313 aaPredicted RBP11.67□□□□□ -0.54
SCN9A-205ENST00000454569 RPL17P18621 184 aaKnown RBP11.67□□□□□ -0.54
SCN9A-205ENST00000454569 TYMPP19971 482 aa11.67□□□□□ -0.54
SCN9A-205ENST00000454569 RGS19P49795 217 aa11.67□□□□□ -0.54
SCN9A-205ENST00000454569 CACNA2D1P54289 1103 aa11.67□□□□□ -0.54
SCN9A-205ENST00000454569 YWHAEP62258 255 aaKnown RBP11.67□□□□□ -0.54
SCN9A-205ENST00000454569 SLC18A3Q16572 532 aa11.67□□□□□ -0.54
SCN9A-205ENST00000454569 MDH1BQ5I0G3 518 aa11.67□□□□□ -0.54
SCN9A-205ENST00000454569 TTC30AQ86WT1 665 aa11.67□□□□□ -0.54
SCN9A-205ENST00000454569 REXO1L1PQ8IX06 675 aa11.67□□□□□ -0.54
SCN9A-205ENST00000454569 CCDC170Q8IYT3 715 aa11.67□□□□□ -0.54
SCN9A-205ENST00000454569 TMEM86AQ8N2M4 240 aa11.67□□□□□ -0.54
SCN9A-205ENST00000454569 KLHL23Q8NBE8 558 aa11.67□□□□□ -0.54
SCN9A-205ENST00000454569 B3GALNT2Q8NCR0 500 aa11.67□□□□□ -0.54
SCN9A-205ENST00000454569 CPA5Q8WXQ8 436 aa11.67□□□□□ -0.54
SCN9A-205ENST00000454569 SYT15Q9BQS2 421 aa11.67□□□□□ -0.54
SCN9A-205ENST00000454569 B3GNT5Q9BYG0 378 aa11.67□□□□□ -0.54
SCN9A-205ENST00000454569 LACRTQ9GZZ8 138 aa11.67□□□□□ -0.54
SCN9A-205ENST00000454569 DEF6Q9H4E7 631 aa11.67□□□□□ -0.54
SCN9A-205ENST00000454569 CHORDC1Q9UHD1 332 aaPredicted RBP11.67□□□□□ -0.54
SCN9A-205ENST00000454569 WDR3Q9UNX4 943 aaKnown RBP eCLIP11.67□□□□□ -0.54
SCN9A-205ENST00000454569 DUSP10Q9Y6W6 482 aa11.67□□□□□ -0.54
SCN9A-205ENST00000454569 MTCL1Q9Y4B5 1905 aaKnown RBP11.66□□□□□ -0.54
SCN9A-205ENST00000454569 TBC1D4O60343 1298 aa11.66□□□□□ -0.54
SCN9A-205ENST00000454569 BEST1O76090 585 aa11.66□□□□□ -0.54
SCN9A-205ENST00000454569 OAZ2O95190 189 aa11.66□□□□□ -0.54
SCN9A-205ENST00000454569 VNN2O95498 520 aa11.66□□□□□ -0.54
SCN9A-205ENST00000454569 CA3P07451 260 aa11.66□□□□□ -0.54
SCN9A-205ENST00000454569 FAM163BP0C2L3 166 aa11.66□□□□□ -0.54
SCN9A-205ENST00000454569 HOXB3P14651 431 aaPredicted RBP11.66□□□□□ -0.54
SCN9A-205ENST00000454569 LAG3P18627 525 aa11.66□□□□□ -0.54
SCN9A-205ENST00000454569 DNAJB1P25685 340 aa11.66□□□□□ -0.54
SCN9A-205ENST00000454569 ADORA2BP29275 332 aa11.66□□□□□ -0.54
SCN9A-205ENST00000454569 LHX1P48742 406 aa11.66□□□□□ -0.54
SCN9A-205ENST00000454569 BPIFB4P59827 614 aa11.66□□□□□ -0.54
SCN9A-205ENST00000454569 YWHAHQ04917 246 aaPredicted RBP11.66□□□□□ -0.54
SCN9A-205ENST00000454569 BMS1Q14692 1282 aaKnown RBP11.66□□□□□ -0.54
SCN9A-205ENST00000454569 CNGA2Q16280 664 aa11.66□□□□□ -0.54
SCN9A-205ENST00000454569 CLEC16AQ2KHT3 1053 aa11.66□□□□□ -0.54
SCN9A-205ENST00000454569 PKDCCQ504Y2 493 aa11.66□□□□□ -0.54
SCN9A-205ENST00000454569 SGO2Q562F6 1265 aa11.66□□□□□ -0.54
SCN9A-205ENST00000454569 CCDC122Q5T0U0 273 aa11.66□□□□□ -0.54
SCN9A-205ENST00000454569 ALKBH5Q6P6C2 394 aaKnown RBP11.66□□□□□ -0.54
SCN9A-205ENST00000454569 FAM171BQ6P995 826 aa11.66□□□□□ -0.54
SCN9A-205ENST00000454569 PHLDB2Q86SQ0 1253 aa11.66□□□□□ -0.54
SCN9A-205ENST00000454569 FUKQ8N0W3 1084 aa11.66□□□□□ -0.54
SCN9A-205ENST00000454569 SLC2A14Q8TDB8 520 aa11.66□□□□□ -0.54
SCN9A-205ENST00000454569 CHST7Q9NS84 486 aa11.66□□□□□ -0.54
SCN9A-205ENST00000454569 SPG21Q9NZD8 308 aa11.66□□□□□ -0.54
SCN9A-205ENST00000454569 SALL4Q9UJQ4 1053 aa11.66□□□□□ -0.54
SCN9A-205ENST00000454569 TSPAN16Q9UKR8 245 aa11.66□□□□□ -0.54
SCN9A-205ENST00000454569 MTUS1Q9ULD2 1270 aa11.66□□□□□ -0.54
SCN9A-205ENST00000454569 PCDHGC3Q9UN70 934 aa11.66□□□□□ -0.54
SCN9A-205ENST00000454569 PPP2R2CQ9Y2T4 447 aa11.66□□□□□ -0.54
SCN9A-205ENST00000454569 PCDHA13Q9Y5I0 950 aa11.66□□□□□ -0.54
SCN9A-205ENST00000454569 SF3B1O75533 1304 aaKnown RBP eCLIP11.65□□□□□ -0.54
SCN9A-205ENST00000454569 C2CD2LO14523 706 aa11.65□□□□□ -0.54
SCN9A-205ENST00000454569 SYN3O14994 580 aa11.65□□□□□ -0.54
SCN9A-205ENST00000454569 FGF18O76093 207 aa11.65□□□□□ -0.54
SCN9A-205ENST00000454569 CCDC172P0C7W6 258 aa11.65□□□□□ -0.54
SCN9A-205ENST00000454569 CYLC1P35663 651 aaPredicted RBP11.65□□□□□ -0.54
SCN9A-205ENST00000454569 ARHGAP25P42331 645 aa11.65□□□□□ -0.54
SCN9A-205ENST00000454569 GPD2P43304 727 aa11.65□□□□□ -0.54
SCN9A-205ENST00000454569 NOMO3P69849 1222 aa11.65□□□□□ -0.54
SCN9A-205ENST00000454569 GOLGA7BQ2TAP0 167 aa11.65□□□□□ -0.54
SCN9A-205ENST00000454569 INTS6LQ5JSJ4 861 aaKnown RBP11.65□□□□□ -0.54
SCN9A-205ENST00000454569 NAA35Q5VZE5 725 aa11.65□□□□□ -0.54
SCN9A-205ENST00000454569 LCLAT1Q6UWP7 414 aa11.65□□□□□ -0.54
SCN9A-205ENST00000454569 METTL23Q86XA0 190 aa11.65□□□□□ -0.54
SCN9A-205ENST00000454569 C1orf131Q8NDD1 294 aaKnown RBP11.65□□□□□ -0.54
SCN9A-205ENST00000454569 PCED1BQ96HM7 432 aa11.65□□□□□ -0.54
SCN9A-205ENST00000454569 ACBD6Q9BR61 282 aa11.65□□□□□ -0.54
SCN9A-205ENST00000454569 PBX4Q9BYU1 374 aa11.65□□□□□ -0.54
SCN9A-205ENST00000454569 ZNF518BQ9C0D4 1074 aa11.65□□□□□ -0.54
SCN9A-205ENST00000454569 ALG13Q9NP73 1137 aaKnown RBP11.65□□□□□ -0.54
SCN9A-205ENST00000454569 CDH9Q9ULB4 789 aa11.65□□□□□ -0.54
SCN9A-205ENST00000454569 PCDHGC5Q9Y5F6 944 aa11.65□□□□□ -0.54
SCN9A-205ENST00000454569 PIK3R2O00459 728 aa11.64□□□□□ -0.55
SCN9A-205ENST00000454569 TRAPPC3O43617 180 aa11.64□□□□□ -0.55
SCN9A-205ENST00000454569 CSPG5O95196 566 aa11.64□□□□□ -0.55
SCN9A-205ENST00000454569 FTLP02792 175 aaPredicted RBP11.64□□□□□ -0.55
SCN9A-205ENST00000454569 DNAJB2P25686 324 aa11.64□□□□□ -0.55
SCN9A-205ENST00000454569 BMPR1AP36894 532 aa11.64□□□□□ -0.55
SCN9A-205ENST00000454569 MAGEA1P43355 309 aa11.64□□□□□ -0.55
SCN9A-205ENST00000454569 GALCP54803 685 aa11.64□□□□□ -0.55
SCN9A-205ENST00000454569 PTP4A2Q12974 167 aa11.64□□□□□ -0.55
SCN9A-205ENST00000454569 CTXN3Q4LDR2 81 aa11.64□□□□□ -0.55
SCN9A-205ENST00000454569 ARHGAP17Q68EM7 881 aa11.64□□□□□ -0.55
SCN9A-205ENST00000454569 ACAD10Q6JQN1 1059 aa11.64□□□□□ -0.55
SCN9A-205ENST00000454569 PDZRN4Q6ZMN7 1036 aaPredicted RBP11.64□□□□□ -0.55
SCN9A-205ENST00000454569 DDX53Q86TM3 631 aaKnown RBP11.64□□□□□ -0.55
SCN9A-205ENST00000454569 ZNF677Q86XU0 584 aa11.64□□□□□ -0.55
SCN9A-205ENST00000454569 CCAR2Q8N163 923 aaKnown RBP11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms