RNA–Protein interactions for RNA: ENST00000453046.5

SQSTM1-204, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 572 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-204ENST00000453046 SPATA6Q9NWH7 488 aaPredicted RBP19.3■□□□□ 0.68
SQSTM1-204ENST00000453046 DDX43Q9NXZ2 648 aaKnown RBP19.3■□□□□ 0.68
SQSTM1-204ENST00000453046 L1RE1Q9UN81 338 aa19.3■□□□□ 0.68
SQSTM1-204ENST00000453046 TSC2P49815 1807 aa19.3■□□□□ 0.68
SQSTM1-204ENST00000453046 PRR23AA6NEV1 266 aa19.29■□□□□ 0.68
SQSTM1-204ENST00000453046 MAN2B1O00754 1011 aa19.29■□□□□ 0.68
SQSTM1-204ENST00000453046 HAPLN1P10915 354 aaPredicted RBP19.29■□□□□ 0.68
SQSTM1-204ENST00000453046 ATF6P18850 670 aa19.29■□□□□ 0.68
SQSTM1-204ENST00000453046 CDC25CP30307 473 aa19.29■□□□□ 0.68
SQSTM1-204ENST00000453046 NCAPHQ15003 741 aa19.29■□□□□ 0.68
SQSTM1-204ENST00000453046 NFE2Q16621 373 aaPredicted RBP19.29■□□□□ 0.68
SQSTM1-204ENST00000453046 DUOXA2Q1HG44 320 aa19.29■□□□□ 0.68
SQSTM1-204ENST00000453046 GPR158Q5T848 1215 aa19.29■□□□□ 0.68
SQSTM1-204ENST00000453046 GPIHBP1Q8IV16 184 aa19.29■□□□□ 0.68
SQSTM1-204ENST00000453046 ARID3BQ8IVW6 561 aaPredicted RBP19.29■□□□□ 0.68
SQSTM1-204ENST00000453046 ACBD6Q9BR61 282 aa19.29■□□□□ 0.68
SQSTM1-204ENST00000453046 AGPAT3Q9NRZ7 376 aa19.29■□□□□ 0.68
SQSTM1-204ENST00000453046 GDAP2Q9NXN4 497 aa19.29■□□□□ 0.68
SQSTM1-204ENST00000453046 DMDP11532 3685 aa19.29■□□□□ 0.68
SQSTM1-204ENST00000453046 CLIC2O15247 247 aa19.28■□□□□ 0.68
SQSTM1-204ENST00000453046 LAMTOR5O43504 91 aa19.28■□□□□ 0.68
SQSTM1-204ENST00000453046 ACAT1P24752 427 aaKnown RBP19.28■□□□□ 0.68
SQSTM1-204ENST00000453046 CCNE1P24864 410 aa19.28■□□□□ 0.68
SQSTM1-204ENST00000453046 TARSP26639 723 aaKnown RBP19.28■□□□□ 0.68
SQSTM1-204ENST00000453046 HOXD13P35453 343 aa19.28■□□□□ 0.68
SQSTM1-204ENST00000453046 MAGEA9P43362 315 aa19.28■□□□□ 0.68
SQSTM1-204ENST00000453046 CYP2J2P51589 502 aa19.28■□□□□ 0.68
SQSTM1-204ENST00000453046 LRRC63Q05C16 580 aa19.28■□□□□ 0.68
SQSTM1-204ENST00000453046 HS2ST1Q7LGA3 356 aa19.28■□□□□ 0.68
SQSTM1-204ENST00000453046 TOP6BLQ8N6T0 577 aa19.28■□□□□ 0.68
SQSTM1-204ENST00000453046 OR5B17Q8NGF7 314 aa19.28■□□□□ 0.68
SQSTM1-204ENST00000453046 CSGALNACT1Q8TDX6 532 aa19.28■□□□□ 0.68
SQSTM1-204ENST00000453046 SCFD1Q8WVM8 642 aa19.28■□□□□ 0.68
SQSTM1-204ENST00000453046 FNBP1Q96RU3 617 aa19.28■□□□□ 0.68
SQSTM1-204ENST00000453046 PI4K2AQ9BTU6 479 aa19.28■□□□□ 0.68
SQSTM1-204ENST00000453046 TMLHEQ9NVH6 421 aa19.28■□□□□ 0.68
SQSTM1-204ENST00000453046 SIX4Q9UIU6 781 aa19.28■□□□□ 0.68
SQSTM1-204ENST00000453046 NDRG2Q9UN36 371 aaKnown RBP19.28■□□□□ 0.68
SQSTM1-204ENST00000453046 MAPK8IP1Q9UQF2 711 aa19.28■□□□□ 0.68
SQSTM1-204ENST00000453046 COL4A3Q01955 1670 aa19.27■□□□□ 0.68
SQSTM1-204ENST00000453046 SP9P0CG40 484 aa19.27■□□□□ 0.68
SQSTM1-204ENST00000453046 DLATP10515 647 aaKnown RBP19.27■□□□□ 0.68
SQSTM1-204ENST00000453046 TNNI1P19237 187 aa19.27■□□□□ 0.68
SQSTM1-204ENST00000453046 LHX1P48742 406 aa19.27■□□□□ 0.68
SQSTM1-204ENST00000453046 CYP4F8P98187 520 aa19.27■□□□□ 0.68
SQSTM1-204ENST00000453046 SNRNP35Q16560 246 aaKnown RBP19.27■□□□□ 0.68
SQSTM1-204ENST00000453046 SCARA3Q6AZY7 606 aa19.27■□□□□ 0.68
SQSTM1-204ENST00000453046 ZC3H14Q6PJT7 736 aaKnown RBP19.27■□□□□ 0.68
SQSTM1-204ENST00000453046 WDR49Q8IV35 697 aa19.27■□□□□ 0.68
SQSTM1-204ENST00000453046 ADGRF2Q8IZF7 708 aa19.27■□□□□ 0.68
SQSTM1-204ENST00000453046 CXorf38Q8TB03 319 aa19.27■□□□□ 0.68
SQSTM1-204ENST00000453046 HPDLQ96IR7 371 aa19.27■□□□□ 0.68
SQSTM1-204ENST00000453046 TASP1Q9H6P5 420 aa19.27■□□□□ 0.68
SQSTM1-204ENST00000453046 TRPV5Q9NQA5 729 aa19.27■□□□□ 0.68
SQSTM1-204ENST00000453046 PIAS3Q9Y6X2 628 aa19.27■□□□□ 0.68
SQSTM1-204ENST00000453046 R4GN57 208 aa19.27■□□□□ 0.68
SQSTM1-204ENST00000453046 MIA3Q5JRA6 1907 aa19.26■□□□□ 0.67
SQSTM1-204ENST00000453046 TGFB1I1O43294 461 aa19.26■□□□□ 0.67
SQSTM1-204ENST00000453046 PCSK1P29120 753 aa19.26■□□□□ 0.67
SQSTM1-204ENST00000453046 SNRPFP62306 86 aaKnown RBP19.26■□□□□ 0.67
SQSTM1-204ENST00000453046 INTS6LQ5JSJ4 861 aaKnown RBP19.26■□□□□ 0.67
SQSTM1-204ENST00000453046 TTI2Q6NXR4 508 aa19.26■□□□□ 0.67
SQSTM1-204ENST00000453046 XXYLT1Q8NBI6 393 aa19.26■□□□□ 0.67
SQSTM1-204ENST00000453046 SPATA18Q8TC71 538 aa19.26■□□□□ 0.67
SQSTM1-204ENST00000453046 FAM3CQ92520 227 aa19.26■□□□□ 0.67
SQSTM1-204ENST00000453046 MED15Q96RN5 788 aa19.26■□□□□ 0.67
SQSTM1-204ENST00000453046 TSG101Q99816 390 aa19.26■□□□□ 0.67
SQSTM1-204ENST00000453046 GTF3C4Q9UKN8 822 aa19.26■□□□□ 0.67
SQSTM1-204ENST00000453046 MAGED2Q9UNF1 606 aaPredicted RBP19.26■□□□□ 0.67
SQSTM1-204ENST00000453046 NFE2L3Q9Y4A8 694 aa19.26■□□□□ 0.67
SQSTM1-204ENST00000453046 PTPRZ1P23471 2315 aaPredicted RBP19.26■□□□□ 0.67
SQSTM1-204ENST00000453046 VPS13AQ96RL7 3174 aa19.26■□□□□ 0.67
SQSTM1-204ENST00000453046 PTPRJQ12913 1337 aa19.25■□□□□ 0.67
SQSTM1-204ENST00000453046 CHADO15335 359 aa19.25■□□□□ 0.67
SQSTM1-204ENST00000453046 CSH1P0DML2 217 aa19.25■□□□□ 0.67
SQSTM1-204ENST00000453046 CSH2P0DML3 217 aa19.25■□□□□ 0.67
SQSTM1-204ENST00000453046 STX17P56962 302 aa19.25■□□□□ 0.67
SQSTM1-204ENST00000453046 RPL10AP62906 217 aaKnown RBP19.25■□□□□ 0.67
SQSTM1-204ENST00000453046 SOWAHAQ2M3V2 549 aa19.25■□□□□ 0.67
SQSTM1-204ENST00000453046 ZCWPW2Q504Y3 356 aa19.25■□□□□ 0.67
SQSTM1-204ENST00000453046 DPH6Q7L8W6 267 aa19.25■□□□□ 0.67
SQSTM1-204ENST00000453046 OSTM1Q86WC4 334 aa19.25■□□□□ 0.67
SQSTM1-204ENST00000453046 SPATA2LQ8IUW3 424 aaPredicted RBP19.25■□□□□ 0.67
SQSTM1-204ENST00000453046 CLDN23Q96B33 292 aa19.25■□□□□ 0.67
SQSTM1-204ENST00000453046 CCDC127Q96BQ5 260 aa19.25■□□□□ 0.67
SQSTM1-204ENST00000453046 RSPRY1Q96DX4 576 aa19.25■□□□□ 0.67
SQSTM1-204ENST00000453046 MMS19Q96T76 1030 aa19.25■□□□□ 0.67
SQSTM1-204ENST00000453046 MKNK1Q9BUB5 465 aa19.25■□□□□ 0.67
SQSTM1-204ENST00000453046 SEMA4AQ9H3S1 761 aa19.25■□□□□ 0.67
SQSTM1-204ENST00000453046 IL21Q9HBE4 155 aa19.25■□□□□ 0.67
SQSTM1-204ENST00000453046 CGNQ9P2M7 1197 aaKnown RBP19.25■□□□□ 0.67
SQSTM1-204ENST00000453046 NCANO14594 1321 aa19.25■□□□□ 0.67
SQSTM1-204ENST00000453046 RIF1Q5UIP0 2472 aaKnown RBP19.24■□□□□ 0.67
SQSTM1-204ENST00000453046 CYP2F1P24903 491 aa19.24■□□□□ 0.67
SQSTM1-204ENST00000453046 RPS9P46781 194 aaKnown RBP19.24■□□□□ 0.67
SQSTM1-204ENST00000453046 GPR15P49685 360 aa19.24■□□□□ 0.67
SQSTM1-204ENST00000453046 KPNA1P52294 538 aaPredicted RBP19.24■□□□□ 0.67
SQSTM1-204ENST00000453046 CSTF1Q05048 431 aaKnown RBP19.24■□□□□ 0.67
SQSTM1-204ENST00000453046 FCHO2Q0JRZ9 810 aa19.24■□□□□ 0.67
SQSTM1-204ENST00000453046 DDR2Q16832 855 aa19.24■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms