RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 GOLGA5Q8TBA6 731 aa7.59□□□□□ -1.19
VPS41-208ENST00000448833 ZNF507Q8TCN5 953 aa7.59□□□□□ -1.19
VPS41-208ENST00000448833 NOC3LQ8WTT2 800 aaKnown RBP7.59□□□□□ -1.19
VPS41-208ENST00000448833 SAAL1Q96ER3 474 aa7.59□□□□□ -1.19
VPS41-208ENST00000448833 HPDLQ96IR7 371 aa7.59□□□□□ -1.19
VPS41-208ENST00000448833 MYRFLQ96LU7 910 aa7.59□□□□□ -1.19
VPS41-208ENST00000448833 USP28Q96RU2 1077 aa7.59□□□□□ -1.19
VPS41-208ENST00000448833 FNBP1Q96RU3 617 aa7.59□□□□□ -1.19
VPS41-208ENST00000448833 TMEM209Q96SK2 561 aa7.59□□□□□ -1.19
VPS41-208ENST00000448833 SLC46A2Q9BY10 475 aa7.59□□□□□ -1.19
VPS41-208ENST00000448833 BACH2Q9BYV9 841 aa7.59□□□□□ -1.19
VPS41-208ENST00000448833 GKN1Q9NS71 199 aa7.59□□□□□ -1.19
VPS41-208ENST00000448833 INTS13Q9NVM9 706 aa7.59□□□□□ -1.19
VPS41-208ENST00000448833 WDR70Q9NW82 654 aa7.59□□□□□ -1.19
VPS41-208ENST00000448833 FAM13BQ9NYF5 915 aa7.59□□□□□ -1.19
VPS41-208ENST00000448833 MAGEC2Q9UBF1 373 aaPredicted RBP7.59□□□□□ -1.19
VPS41-208ENST00000448833 CDH9Q9ULB4 789 aa7.59□□□□□ -1.19
VPS41-208ENST00000448833 SMG5Q9UPR3 1016 aaKnown RBP7.59□□□□□ -1.19
VPS41-208ENST00000448833 MTMR6Q9Y217 621 aa7.59□□□□□ -1.19
VPS41-208ENST00000448833 SNX9Q9Y5X1 595 aa7.59□□□□□ -1.19
VPS41-208ENST00000448833 GVINP1Q7Z2Y8 2422 aa7.59□□□□□ -1.19
VPS41-208ENST00000448833 OTOGLQ3ZCN5 2332 aa7.58□□□□□ -1.2
VPS41-208ENST00000448833 PTPRDP23468 1912 aa7.58□□□□□ -1.2
VPS41-208ENST00000448833 TRAV19A0A0A6YYK7 116 aa7.58□□□□□ -1.2
VPS41-208ENST00000448833 PVALEFA0A1B0GWK0 134 aa7.58□□□□□ -1.2
VPS41-208ENST00000448833 GABRDO14764 452 aa7.58□□□□□ -1.2
VPS41-208ENST00000448833 SOAT2O75908 522 aa7.58□□□□□ -1.2
VPS41-208ENST00000448833 NOL4O94818 638 aa7.58□□□□□ -1.2
VPS41-208ENST00000448833 PRPF6O94906 941 aaKnown RBP7.58□□□□□ -1.2
VPS41-208ENST00000448833 F11P03951 625 aa7.58□□□□□ -1.2
VPS41-208ENST00000448833 RETP07949 1114 aa7.58□□□□□ -1.2
VPS41-208ENST00000448833 HMGA1P17096 107 aaKnown RBP7.58□□□□□ -1.2
VPS41-208ENST00000448833 TNNI1P19237 187 aa7.58□□□□□ -1.2
VPS41-208ENST00000448833 TRIM21P19474 475 aaKnown RBP7.58□□□□□ -1.2
VPS41-208ENST00000448833 DRD1P21728 446 aa7.58□□□□□ -1.2
VPS41-208ENST00000448833 ANXA13P27216 316 aa7.58□□□□□ -1.2
VPS41-208ENST00000448833 AP3M2P53677 418 aa7.58□□□□□ -1.2
VPS41-208ENST00000448833 ASIC1P78348 528 aa7.58□□□□□ -1.2
VPS41-208ENST00000448833 KCNA1Q09470 495 aa7.58□□□□□ -1.2
VPS41-208ENST00000448833 RUNX3Q13761 415 aa7.58□□□□□ -1.2
VPS41-208ENST00000448833 SIM2Q14190 667 aaPredicted RBP7.58□□□□□ -1.2
VPS41-208ENST00000448833 FAM173BQ6P4H8 233 aa7.58□□□□□ -1.2
VPS41-208ENST00000448833 LONP2Q86WA8 852 aa7.58□□□□□ -1.2
VPS41-208ENST00000448833 ADGRF2Q8IZF7 708 aa7.58□□□□□ -1.2
VPS41-208ENST00000448833 TTC9BQ8N6N2 239 aa7.58□□□□□ -1.2
VPS41-208ENST00000448833 MAB21L3Q8N8X9 362 aa7.58□□□□□ -1.2
VPS41-208ENST00000448833 GIPC2Q8TF65 315 aa7.58□□□□□ -1.2
VPS41-208ENST00000448833 ATP2A3Q93084 1043 aa7.58□□□□□ -1.2
VPS41-208ENST00000448833 SNX21Q969T3 373 aa7.58□□□□□ -1.2
VPS41-208ENST00000448833 SPATA17Q96L03 361 aa7.58□□□□□ -1.2
VPS41-208ENST00000448833 C7orf25Q9BPX7 421 aa7.58□□□□□ -1.2
VPS41-208ENST00000448833 LPIN3Q9BQK8 851 aa7.58□□□□□ -1.2
VPS41-208ENST00000448833 FAM83CQ9BQN1 747 aa7.58□□□□□ -1.2
VPS41-208ENST00000448833 CBWD1Q9BRT8 395 aa7.58□□□□□ -1.2
VPS41-208ENST00000448833 PI4K2AQ9BTU6 479 aa7.58□□□□□ -1.2
VPS41-208ENST00000448833 MKNK1Q9BUB5 465 aa7.58□□□□□ -1.2
VPS41-208ENST00000448833 TRIM9Q9C026 710 aa7.58□□□□□ -1.2
VPS41-208ENST00000448833 DNAI2Q9GZS0 605 aa7.58□□□□□ -1.2
VPS41-208ENST00000448833 PCIF1Q9H4Z3 704 aa7.58□□□□□ -1.2
VPS41-208ENST00000448833 IL21Q9HBE4 155 aa7.58□□□□□ -1.2
VPS41-208ENST00000448833 PDE11AQ9HCR9 933 aa7.58□□□□□ -1.2
VPS41-208ENST00000448833 DLL3Q9NYJ7 618 aa7.58□□□□□ -1.2
VPS41-208ENST00000448833 GTSE1Q9NYZ3 720 aa7.58□□□□□ -1.2
VPS41-208ENST00000448833 HSPBP1Q9NZL4 362 aa7.58□□□□□ -1.2
VPS41-208ENST00000448833 GTF3C4Q9UKN8 822 aa7.58□□□□□ -1.2
VPS41-208ENST00000448833 L1RE1Q9UN81 338 aa7.58□□□□□ -1.2
VPS41-208ENST00000448833 MAGED2Q9UNF1 606 aaPredicted RBP7.58□□□□□ -1.2
VPS41-208ENST00000448833 ATG2BQ96BY7 2078 aa7.58□□□□□ -1.2
VPS41-208ENST00000448833 GOLGA8IPA6NC78 632 aa7.57□□□□□ -1.2
VPS41-208ENST00000448833 SHISA7A6NL88 538 aa7.57□□□□□ -1.2
VPS41-208ENST00000448833 GOLGA8JA6NMD2 632 aa7.57□□□□□ -1.2
VPS41-208ENST00000448833 TRDMT1O14717 391 aaKnown RBP7.57□□□□□ -1.2
VPS41-208ENST00000448833 TRIM66O15016 1216 aa7.57□□□□□ -1.2
VPS41-208ENST00000448833 KIF20AO95235 890 aa7.57□□□□□ -1.2
VPS41-208ENST00000448833 MYL1P05976 194 aa7.57□□□□□ -1.2
VPS41-208ENST00000448833 CKMP06732 381 aa7.57□□□□□ -1.2
VPS41-208ENST00000448833 CYP2F1P24903 491 aa7.57□□□□□ -1.2
VPS41-208ENST00000448833 ATICP31939 592 aa7.57□□□□□ -1.2
VPS41-208ENST00000448833 GNL1P36915 607 aaPredicted RBP7.57□□□□□ -1.2
VPS41-208ENST00000448833 CASP5P51878 434 aa7.57□□□□□ -1.2
VPS41-208ENST00000448833 TNNC1P63316 161 aa7.57□□□□□ -1.2
VPS41-208ENST00000448833 CYP4F8P98187 520 aa7.57□□□□□ -1.2
VPS41-208ENST00000448833 FAM160A1Q05DH4 1040 aa7.57□□□□□ -1.2
VPS41-208ENST00000448833 PSMD2Q13200 908 aa7.57□□□□□ -1.2
VPS41-208ENST00000448833 TRPC3Q13507 836 aa7.57□□□□□ -1.2
VPS41-208ENST00000448833 CCINQ13939 588 aa7.57□□□□□ -1.2
VPS41-208ENST00000448833 KCNB1Q14721 858 aa7.57□□□□□ -1.2
VPS41-208ENST00000448833 PON2Q15165 354 aa7.57□□□□□ -1.2
VPS41-208ENST00000448833 SNRNP35Q16560 246 aaKnown RBP7.57□□□□□ -1.2
VPS41-208ENST00000448833 SOWAHAQ2M3V2 549 aa7.57□□□□□ -1.2
VPS41-208ENST00000448833 FAM26FQ5R3K3 315 aa7.57□□□□□ -1.2
VPS41-208ENST00000448833 STXBP5Q5T5C0 1151 aa7.57□□□□□ -1.2
VPS41-208ENST00000448833 FAM171BQ6P995 826 aa7.57□□□□□ -1.2
VPS41-208ENST00000448833 TSSK4Q6SA08 328 aa7.57□□□□□ -1.2
VPS41-208ENST00000448833 UNC13DQ70J99 1090 aa7.57□□□□□ -1.2
VPS41-208ENST00000448833 HSCBQ8IWL3 235 aa7.57□□□□□ -1.2
VPS41-208ENST00000448833 CEP57L1Q8IYX8 460 aa7.57□□□□□ -1.2
VPS41-208ENST00000448833 CPA6Q8N4T0 437 aa7.57□□□□□ -1.2
VPS41-208ENST00000448833 CAMKK1Q8N5S9 505 aa7.57□□□□□ -1.2
VPS41-208ENST00000448833 XXYLT1Q8NBI6 393 aa7.57□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms