RNA–Protein interactions for RNA: ENST00000442232.1

TTC28-203, Transcript of tetratricopeptide repeat domain 28, humanhuman

TSL 2

Gene TTC28, Length 499 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-203ENST00000442232 SLC46A2Q9BY10 475 aa12.62□□□□□ -0.39
TTC28-203ENST00000442232 RBM12Q9NTZ6 932 aaKnown RBP12.62□□□□□ -0.39
TTC28-203ENST00000442232 TDP1Q9NUW8 608 aa12.62□□□□□ -0.39
TTC28-203ENST00000442232 MAGEC2Q9UBF1 373 aaPredicted RBP12.62□□□□□ -0.39
TTC28-203ENST00000442232 GTF3C4Q9UKN8 822 aa12.62□□□□□ -0.39
TTC28-203ENST00000442232 CDH9Q9ULB4 789 aa12.62□□□□□ -0.39
TTC28-203ENST00000442232 USP18Q9UMW8 372 aa12.62□□□□□ -0.39
TTC28-203ENST00000442232 HELZP42694 1942 aaKnown RBP12.62□□□□□ -0.39
TTC28-203ENST00000442232 TRAV19A0A0A6YYK7 116 aa12.61□□□□□ -0.39
TTC28-203ENST00000442232 NOL4O94818 638 aa12.61□□□□□ -0.39
TTC28-203ENST00000442232 F11P03951 625 aa12.61□□□□□ -0.39
TTC28-203ENST00000442232 CKMP06732 381 aa12.61□□□□□ -0.39
TTC28-203ENST00000442232 USP17L7P0C7H9 530 aa12.61□□□□□ -0.39
TTC28-203ENST00000442232 ZSCAN22P10073 491 aaPredicted RBP12.61□□□□□ -0.39
TTC28-203ENST00000442232 DLATP10515 647 aaKnown RBP12.61□□□□□ -0.39
TTC28-203ENST00000442232 HMGA1P17096 107 aaKnown RBP12.61□□□□□ -0.39
TTC28-203ENST00000442232 PDE6CP51160 858 aa12.61□□□□□ -0.39
TTC28-203ENST00000442232 CYP2J2P51589 502 aa12.61□□□□□ -0.39
TTC28-203ENST00000442232 SNRPFP62306 86 aaKnown RBP12.61□□□□□ -0.39
TTC28-203ENST00000442232 TNNC1P63316 161 aa12.61□□□□□ -0.39
TTC28-203ENST00000442232 SATB1Q01826 763 aa12.61□□□□□ -0.39
TTC28-203ENST00000442232 LMNB2Q03252 620 aa12.61□□□□□ -0.39
TTC28-203ENST00000442232 TNK2Q07912 1038 aa12.61□□□□□ -0.39
TTC28-203ENST00000442232 GRSF1Q12849 480 aaKnown RBP eCLIP12.61□□□□□ -0.39
TTC28-203ENST00000442232 ZNF268Q14587 947 aaPredicted RBP12.61□□□□□ -0.39
TTC28-203ENST00000442232 KCNB1Q14721 858 aa12.61□□□□□ -0.39
TTC28-203ENST00000442232 PDGFRLQ15198 375 aa12.61□□□□□ -0.39
TTC28-203ENST00000442232 SNRNP35Q16560 246 aaKnown RBP12.61□□□□□ -0.39
TTC28-203ENST00000442232 SOWAHAQ2M3V2 549 aa12.61□□□□□ -0.39
TTC28-203ENST00000442232 FOXD4L6Q3SYB3 417 aaPredicted RBP12.61□□□□□ -0.39
TTC28-203ENST00000442232 CFAP221Q4G0U5 840 aa12.61□□□□□ -0.39
TTC28-203ENST00000442232 SDHAF4Q5VUM1 108 aa12.61□□□□□ -0.39
TTC28-203ENST00000442232 TXNDC8Q6A555 127 aa12.61□□□□□ -0.39
TTC28-203ENST00000442232 LAIR1Q6GTX8 287 aa12.61□□□□□ -0.39
TTC28-203ENST00000442232 TXNDC11Q6PKC3 985 aa12.61□□□□□ -0.39
TTC28-203ENST00000442232 FOXD4L3Q6VB84 417 aaPredicted RBP12.61□□□□□ -0.39
TTC28-203ENST00000442232 UNC13DQ70J99 1090 aa12.61□□□□□ -0.39
TTC28-203ENST00000442232 MON1AQ86VX9 555 aa12.61□□□□□ -0.39
TTC28-203ENST00000442232 OSTM1Q86WC4 334 aa12.61□□□□□ -0.39
TTC28-203ENST00000442232 CEP57L1Q8IYX8 460 aa12.61□□□□□ -0.39
TTC28-203ENST00000442232 GLIS3Q8NEA6 775 aa12.61□□□□□ -0.39
TTC28-203ENST00000442232 USP13Q92995 863 aaPredicted RBP12.61□□□□□ -0.39
TTC28-203ENST00000442232 HPS3Q969F9 1004 aa12.61□□□□□ -0.39
TTC28-203ENST00000442232 SNX21Q969T3 373 aa12.61□□□□□ -0.39
TTC28-203ENST00000442232 RMDN1Q96DB5 314 aa12.61□□□□□ -0.39
TTC28-203ENST00000442232 C7orf25Q9BPX7 421 aa12.61□□□□□ -0.39
TTC28-203ENST00000442232 SNX25Q9H3E2 840 aa12.61□□□□□ -0.39
TTC28-203ENST00000442232 AGPAT3Q9NRZ7 376 aa12.61□□□□□ -0.39
TTC28-203ENST00000442232 GKN1Q9NS71 199 aa12.61□□□□□ -0.39
TTC28-203ENST00000442232 EHD2Q9NZN4 543 aa12.61□□□□□ -0.39
TTC28-203ENST00000442232 CGNQ9P2M7 1197 aaKnown RBP12.61□□□□□ -0.39
TTC28-203ENST00000442232 SIX4Q9UIU6 781 aa12.61□□□□□ -0.39
TTC28-203ENST00000442232 CFAP45Q9UL16 551 aa12.61□□□□□ -0.39
TTC28-203ENST00000442232 RALGAPA1Q6GYQ0 2036 aa12.61□□□□□ -0.39
TTC28-203ENST00000442232 PTPRDP23468 1912 aa12.6□□□□□ -0.39
TTC28-203ENST00000442232 GREB1Q4ZG55 1949 aa12.6□□□□□ -0.39
TTC28-203ENST00000442232 ANAPC1Q9H1A4 1944 aa12.6□□□□□ -0.39
TTC28-203ENST00000442232 POLR2DO15514 142 aaKnown RBP12.6□□□□□ -0.39
TTC28-203ENST00000442232 PAPSS2O95340 614 aaPredicted RBP12.6□□□□□ -0.39
TTC28-203ENST00000442232 F13A1P00488 732 aa12.6□□□□□ -0.39
TTC28-203ENST00000442232 TDGF1P13385 188 aa12.6□□□□□ -0.39
TTC28-203ENST00000442232 CNR2P34972 360 aa12.6□□□□□ -0.39
TTC28-203ENST00000442232 MAGEA11P43364 429 aa12.6□□□□□ -0.39
TTC28-203ENST00000442232 IFNAR2P48551 515 aa12.6□□□□□ -0.39
TTC28-203ENST00000442232 PSMC1P62191 440 aaKnown RBP12.6□□□□□ -0.39
TTC28-203ENST00000442232 CYP27A1Q02318 531 aa12.6□□□□□ -0.39
TTC28-203ENST00000442232 TRPC3Q13507 836 aa12.6□□□□□ -0.39
TTC28-203ENST00000442232 RUNX3Q13761 415 aa12.6□□□□□ -0.39
TTC28-203ENST00000442232 HEATR6Q6AI08 1181 aaKnown RBP12.6□□□□□ -0.39
TTC28-203ENST00000442232 ATL3Q6DD88 541 aa12.6□□□□□ -0.39
TTC28-203ENST00000442232 CNNM4Q6P4Q7 775 aa12.6□□□□□ -0.39
TTC28-203ENST00000442232 SHC4Q6S5L8 630 aa12.6□□□□□ -0.39
TTC28-203ENST00000442232 VSTM1Q6UX27 236 aa12.6□□□□□ -0.39
TTC28-203ENST00000442232 Q6ZS52 159 aa12.6□□□□□ -0.39
TTC28-203ENST00000442232 CEP68Q76N32 757 aa12.6□□□□□ -0.39
TTC28-203ENST00000442232 TRAPPC11Q7Z392 1133 aa12.6□□□□□ -0.39
TTC28-203ENST00000442232 ARHGAP30Q7Z6I6 1101 aaPredicted RBP12.6□□□□□ -0.39
TTC28-203ENST00000442232 LONP2Q86WA8 852 aa12.6□□□□□ -0.39
TTC28-203ENST00000442232 NELFCDQ8IXH7 590 aa12.6□□□□□ -0.39
TTC28-203ENST00000442232 CPA6Q8N4T0 437 aa12.6□□□□□ -0.39
TTC28-203ENST00000442232 XXYLT1Q8NBI6 393 aa12.6□□□□□ -0.39
TTC28-203ENST00000442232 RDH13Q8NBN7 331 aa12.6□□□□□ -0.39
TTC28-203ENST00000442232 STKLD1Q8NE28 680 aa12.6□□□□□ -0.39
TTC28-203ENST00000442232 OR5B17Q8NGF7 314 aa12.6□□□□□ -0.39
TTC28-203ENST00000442232 ZNF507Q8TCN5 953 aa12.6□□□□□ -0.39
TTC28-203ENST00000442232 FAM84AQ96KN4 292 aa12.6□□□□□ -0.39
TTC28-203ENST00000442232 LRRC3BQ96PB8 259 aa12.6□□□□□ -0.39
TTC28-203ENST00000442232 CGRRF1Q99675 332 aa12.6□□□□□ -0.39
TTC28-203ENST00000442232 EBF3Q9H4W6 596 aa12.6□□□□□ -0.39
TTC28-203ENST00000442232 CDV3Q9UKY7 258 aaKnown RBP12.6□□□□□ -0.39
TTC28-203ENST00000442232 PTPRJQ12913 1337 aa12.6□□□□□ -0.39
TTC28-203ENST00000442232 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.59□□□□□ -0.39
TTC28-203ENST00000442232 PRR5-ARHGAP8B1AHC4 643 aa12.59□□□□□ -0.39
TTC28-203ENST00000442232 CHURC1-FNTBB4DL54 471 aa12.59□□□□□ -0.39
TTC28-203ENST00000442232 GABRDO14764 452 aa12.59□□□□□ -0.39
TTC28-203ENST00000442232 TRIM66O15016 1216 aa12.59□□□□□ -0.39
TTC28-203ENST00000442232 ATG13O75143 517 aa12.59□□□□□ -0.39
TTC28-203ENST00000442232 PHACTR2O75167 634 aa12.59□□□□□ -0.39
TTC28-203ENST00000442232 WARSP23381 471 aaKnown RBP12.59□□□□□ -0.39
TTC28-203ENST00000442232 GRIK1P39086 918 aa12.59□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms