RNA–Protein interactions for RNA: ENST00000439128.6

NEK1-201, Transcript of NIMA related kinase 1, humanhuman

TSL 1 (best) BASIC

Gene NEK1, Length 5,653 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK1-201ENST00000439128 F9P00740 461 aa12.62□□□□□ -0.39
NEK1-201ENST00000439128 INHAP05111 366 aa12.62□□□□□ -0.39
NEK1-201ENST00000439128 PDCLQ13371 301 aa12.62□□□□□ -0.39
NEK1-201ENST00000439128 MKRN4PQ13434 485 aaPredicted RBP12.62□□□□□ -0.39
NEK1-201ENST00000439128 NOMO2Q5JPE7 1267 aa12.62□□□□□ -0.39
NEK1-201ENST00000439128 TMCO5AQ8N6Q1 288 aa12.62□□□□□ -0.39
NEK1-201ENST00000439128 EDEM1Q92611 657 aa12.62□□□□□ -0.39
NEK1-201ENST00000439128 RIOX1Q9H6W3 641 aa12.62□□□□□ -0.39
NEK1-201ENST00000439128 C20orf96Q9NUD7 363 aaPredicted RBP12.62□□□□□ -0.39
NEK1-201ENST00000439128 TMEM131LA2VDJ0 1609 aa12.62□□□□□ -0.39
NEK1-201ENST00000439128 RASA4BC9J798 803 aa12.62□□□□□ -0.39
NEK1-201ENST00000439128 P4HA2O15460 535 aa12.62□□□□□ -0.39
NEK1-201ENST00000439128 RASA4O43374 803 aa12.62□□□□□ -0.39
NEK1-201ENST00000439128 RTN3O95197 1032 aaPredicted RBP12.62□□□□□ -0.39
NEK1-201ENST00000439128 MDM2Q00987 491 aaPredicted RBP12.62□□□□□ -0.39
NEK1-201ENST00000439128 GRB10Q13322 594 aa12.62□□□□□ -0.39
NEK1-201ENST00000439128 TSPAN17Q96FV3 270 aa12.62□□□□□ -0.39
NEK1-201ENST00000439128 CBWD1Q9BRT8 395 aa12.62□□□□□ -0.39
NEK1-201ENST00000439128 RANBP17Q9H2T7 1088 aaKnown RBP12.62□□□□□ -0.39
NEK1-201ENST00000439128 BCL2L12Q9HB09 334 aa12.62□□□□□ -0.39
NEK1-201ENST00000439128 STAU2Q9NUL3 570 aaKnown RBP eCLIP12.62□□□□□ -0.39
NEK1-201ENST00000439128 H2AFYO75367 372 aaKnown RBP12.61□□□□□ -0.39
NEK1-201ENST00000439128 PYGLP06737 847 aa12.61□□□□□ -0.39
NEK1-201ENST00000439128 INPP1P49441 399 aa12.61□□□□□ -0.39
NEK1-201ENST00000439128 MYL6P60660 151 aa12.61□□□□□ -0.39
NEK1-201ENST00000439128 GJB7Q6PEY0 223 aa12.61□□□□□ -0.39
NEK1-201ENST00000439128 CCDC124Q96CT7 223 aaKnown RBP12.61□□□□□ -0.39
NEK1-201ENST00000439128 KIAA1257Q9ULG3 409 aa12.61□□□□□ -0.39
NEK1-201ENST00000439128 RHOBTB1O94844 696 aa12.61□□□□□ -0.39
NEK1-201ENST00000439128 POLR2EP19388 210 aaKnown RBP12.61□□□□□ -0.39
NEK1-201ENST00000439128 C6orf118Q5T5N4 469 aa12.61□□□□□ -0.39
NEK1-201ENST00000439128 TRAPPC11Q7Z392 1133 aa12.61□□□□□ -0.39
NEK1-201ENST00000439128 ZNF677Q86XU0 584 aa12.61□□□□□ -0.39
NEK1-201ENST00000439128 WDR75Q8IWA0 830 aaKnown RBP12.61□□□□□ -0.39
NEK1-201ENST00000439128 ARNTL2Q8WYA1 636 aa12.61□□□□□ -0.39
NEK1-201ENST00000439128 ARHGEF26Q96DR7 871 aa12.61□□□□□ -0.39
NEK1-201ENST00000439128 KAZALD1Q96I82 304 aa12.61□□□□□ -0.39
NEK1-201ENST00000439128 OMDQ99983 421 aa12.61□□□□□ -0.39
NEK1-201ENST00000439128 TSEN34Q9BSV6 310 aaKnown RBP12.61□□□□□ -0.39
NEK1-201ENST00000439128 EFHD1Q9BUP0 239 aa12.61□□□□□ -0.39
NEK1-201ENST00000439128 TRAV19A0A0A6YYK7 116 aa12.61□□□□□ -0.39
NEK1-201ENST00000439128 HMGB1P1B2RPK0 211 aaPredicted RBP12.61□□□□□ -0.39
NEK1-201ENST00000439128 EFCAB14O75071 495 aa12.61□□□□□ -0.39
NEK1-201ENST00000439128 PPM1AP35813 382 aa12.61□□□□□ -0.39
NEK1-201ENST00000439128 TBX4P57082 545 aa12.61□□□□□ -0.39
NEK1-201ENST00000439128 ADCY2Q08462 1091 aa12.61□□□□□ -0.39
NEK1-201ENST00000439128 SLC45A4Q5BKX6 768 aa12.61□□□□□ -0.39
NEK1-201ENST00000439128 CYP2W1Q8TAV3 490 aa12.61□□□□□ -0.39
NEK1-201ENST00000439128 WHAMMQ8TF30 809 aa12.61□□□□□ -0.39
NEK1-201ENST00000439128 PURBQ96QR8 312 aaKnown RBP12.61□□□□□ -0.39
NEK1-201ENST00000439128 CCDC3Q9BQI4 270 aa12.61□□□□□ -0.39
NEK1-201ENST00000439128 CELF4Q9BZC1 486 aaKnown RBP12.61□□□□□ -0.39
NEK1-201ENST00000439128 NEUROG2Q9H2A3 272 aa12.61□□□□□ -0.39
NEK1-201ENST00000439128 BAIAP2L1Q9UHR4 511 aa12.61□□□□□ -0.39
NEK1-201ENST00000439128 A0A087WUV0 522 aaPredicted RBP12.61□□□□□ -0.39
NEK1-201ENST00000439128 WTIPA6NIX2 430 aaPredicted RBP12.61□□□□□ -0.39
NEK1-201ENST00000439128 CTIFO43310 598 aaKnown RBP12.61□□□□□ -0.39
NEK1-201ENST00000439128 HIST2H2ACQ16777 129 aaPredicted RBP12.61□□□□□ -0.39
NEK1-201ENST00000439128 HIST2H2AA3Q6FI13 130 aa12.61□□□□□ -0.39
NEK1-201ENST00000439128 C16orf59Q7L2K0 433 aa12.61□□□□□ -0.39
NEK1-201ENST00000439128 FBXO22Q8NEZ5 403 aa12.61□□□□□ -0.39
NEK1-201ENST00000439128 AGR3Q8TD06 166 aa12.61□□□□□ -0.39
NEK1-201ENST00000439128 KIF1AQ12756 1690 aa12.61□□□□□ -0.39
NEK1-201ENST00000439128 TMEM150BA6NC51 233 aa12.6□□□□□ -0.39
NEK1-201ENST00000439128 GRIK5Q16478 980 aa12.6□□□□□ -0.39
NEK1-201ENST00000439128 MUM1Q2TAK8 710 aa12.6□□□□□ -0.39
NEK1-201ENST00000439128 RIC1Q4ADV7 1423 aa12.6□□□□□ -0.39
NEK1-201ENST00000439128 MTHFD1LQ6UB35 978 aa12.6□□□□□ -0.39
NEK1-201ENST00000439128 LCA5Q86VQ0 697 aa12.6□□□□□ -0.39
NEK1-201ENST00000439128 FEZF2Q8TBJ5 459 aa12.6□□□□□ -0.39
NEK1-201ENST00000439128 SMARCD1Q96GM5 515 aa12.6□□□□□ -0.39
NEK1-201ENST00000439128 BUD13Q9BRD0 619 aaKnown RBP eCLIP12.6□□□□□ -0.392e-6■□□□□ 9.9
NEK1-201ENST00000439128 FAM129AQ9BZQ8 928 aa12.6□□□□□ -0.39
NEK1-201ENST00000439128 IL17RBQ9NRM6 502 aa12.6□□□□□ -0.39
NEK1-201ENST00000439128 SF3B1O75533 1304 aaKnown RBP eCLIP12.6□□□□□ -0.392e-7■■■■■ 58.5
NEK1-201ENST00000439128 UMODL1Q5DID0 1318 aa12.6□□□□□ -0.39
NEK1-201ENST00000439128 BST2Q10589 180 aaKnown RBP12.6□□□□□ -0.39
NEK1-201ENST00000439128 USP10Q14694 798 aaKnown RBP12.6□□□□□ -0.39
NEK1-201ENST00000439128 PABPC1LQ4VXU2 614 aaKnown RBP12.6□□□□□ -0.39
NEK1-201ENST00000439128 SPATA18Q8TC71 538 aa12.6□□□□□ -0.39
NEK1-201ENST00000439128 LPPQ93052 612 aa12.6□□□□□ -0.39
NEK1-201ENST00000439128 TMEM176AQ96HP8 235 aa12.6□□□□□ -0.39
NEK1-201ENST00000439128 TACO1Q9BSH4 297 aaKnown RBP12.6□□□□□ -0.39
NEK1-201ENST00000439128 WDR18Q9BV38 432 aa12.6□□□□□ -0.39
NEK1-201ENST00000439128 EML4Q9HC35 981 aaKnown RBP12.6□□□□□ -0.39
NEK1-201ENST00000439128 TRIM66O15016 1216 aa12.6□□□□□ -0.39
NEK1-201ENST00000439128 ATP6V1E1P36543 226 aa12.6□□□□□ -0.39
NEK1-201ENST00000439128 RAP1GDS1P52306 607 aa12.6□□□□□ -0.39
NEK1-201ENST00000439128 FOXR1Q6PIV2 292 aa12.6□□□□□ -0.39
NEK1-201ENST00000439128 TRMT10CQ7L0Y3 403 aaKnown RBP12.6□□□□□ -0.39
NEK1-201ENST00000439128 SLFN11Q7Z7L1 901 aa12.6□□□□□ -0.39
NEK1-201ENST00000439128 TRIM15Q9C019 465 aa12.6□□□□□ -0.39
NEK1-201ENST00000439128 DDX47Q9H0S4 455 aaKnown RBP12.6□□□□□ -0.39
NEK1-201ENST00000439128 HDAC6Q9UBN7 1215 aa12.6□□□□□ -0.39
NEK1-201ENST00000439128 TBC1D12O60347 775 aa12.6□□□□□ -0.39
NEK1-201ENST00000439128 CTSEP14091 401 aa12.6□□□□□ -0.39
NEK1-201ENST00000439128 GALCP54803 685 aa12.6□□□□□ -0.39
NEK1-201ENST00000439128 HIF1AQ16665 826 aa12.6□□□□□ -0.39
NEK1-201ENST00000439128 USP41Q3LFD5 358 aa12.6□□□□□ -0.39
NEK1-201ENST00000439128 ANKRD20A4Q4UJ75 823 aa12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms