RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 CA14Q9ULX7 337 aa16.22■□□□□ 0.19
LIMS3-201ENST00000437679 MUC6Q6W4X9 2439 aa16.21■□□□□ 0.19
LIMS3-201ENST00000437679 STK25O00506 426 aa16.21■□□□□ 0.19
LIMS3-201ENST00000437679 SLC16A3O15427 465 aaKnown RBP16.21■□□□□ 0.19
LIMS3-201ENST00000437679 STX10O60499 249 aa16.21■□□□□ 0.19
LIMS3-201ENST00000437679 ASS1P00966 412 aaKnown RBP16.21■□□□□ 0.19
LIMS3-201ENST00000437679 PTPN1P18031 435 aaKnown RBP16.21■□□□□ 0.19
LIMS3-201ENST00000437679 BDNFP23560 247 aa16.21■□□□□ 0.19
LIMS3-201ENST00000437679 FCARP24071 287 aa16.21■□□□□ 0.19
LIMS3-201ENST00000437679 CCNE1P24864 410 aa16.21■□□□□ 0.19
LIMS3-201ENST00000437679 AVPR2P30518 371 aa16.21■□□□□ 0.19
LIMS3-201ENST00000437679 RAP1GAPP47736 663 aa16.21■□□□□ 0.19
LIMS3-201ENST00000437679 CDH8P55286 799 aa16.21■□□□□ 0.19
LIMS3-201ENST00000437679 PPP3CAQ08209 521 aa16.21■□□□□ 0.19
LIMS3-201ENST00000437679 MDH1BQ5I0G3 518 aa16.21■□□□□ 0.19
LIMS3-201ENST00000437679 SDHAF4Q5VUM1 108 aa16.21■□□□□ 0.19
LIMS3-201ENST00000437679 CCDC150Q8NCX0 1101 aa16.21■□□□□ 0.19
LIMS3-201ENST00000437679 E2F7Q96AV8 911 aa16.21■□□□□ 0.19
LIMS3-201ENST00000437679 ELMO3Q96BJ8 720 aa16.21■□□□□ 0.19
LIMS3-201ENST00000437679 PCED1BQ96HM7 432 aa16.21■□□□□ 0.19
LIMS3-201ENST00000437679 PLA2G2FQ9BZM2 168 aa16.21■□□□□ 0.19
LIMS3-201ENST00000437679 KCNH6Q9H252 994 aa16.21■□□□□ 0.19
LIMS3-201ENST00000437679 TRPV4Q9HBA0 871 aa16.21■□□□□ 0.19
LIMS3-201ENST00000437679 IL21Q9HBE4 155 aa16.21■□□□□ 0.19
LIMS3-201ENST00000437679 TMEM8AQ9HCN3 771 aa16.21■□□□□ 0.19
LIMS3-201ENST00000437679 ARHGEF3Q9NR81 526 aa16.21■□□□□ 0.19
LIMS3-201ENST00000437679 UXTQ9UBK9 157 aaPredicted RBP16.21■□□□□ 0.19
LIMS3-201ENST00000437679 MAGED2Q9UNF1 606 aaPredicted RBP16.21■□□□□ 0.19
LIMS3-201ENST00000437679 ARIH1Q9Y4X5 557 aaPredicted RBP16.21■□□□□ 0.19
LIMS3-201ENST00000437679 KRBA1A5PL33 1030 aa16.2■□□□□ 0.18
LIMS3-201ENST00000437679 TRIM49BA6NDI0 452 aa16.2■□□□□ 0.18
LIMS3-201ENST00000437679 SLC38A8A6NNN8 435 aa16.2■□□□□ 0.18
LIMS3-201ENST00000437679 BIN1O00499 593 aa16.2■□□□□ 0.18
LIMS3-201ENST00000437679 HMGA1P17096 107 aaKnown RBP16.2■□□□□ 0.18
LIMS3-201ENST00000437679 ANXA13P27216 316 aa16.2■□□□□ 0.18
LIMS3-201ENST00000437679 GRIK1P39086 918 aa16.2■□□□□ 0.18
LIMS3-201ENST00000437679 CLCN5P51795 746 aa16.2■□□□□ 0.18
LIMS3-201ENST00000437679 PMS1P54277 932 aaKnown RBP16.2■□□□□ 0.18
LIMS3-201ENST00000437679 VCPP55072 806 aaKnown RBP16.2■□□□□ 0.18
LIMS3-201ENST00000437679 MORC3Q14149 939 aa16.2■□□□□ 0.18
LIMS3-201ENST00000437679 STXBP5Q5T5C0 1151 aa16.2■□□□□ 0.18
LIMS3-201ENST00000437679 KRT39Q6A163 491 aa16.2■□□□□ 0.18
LIMS3-201ENST00000437679 ASTLQ6HA08 431 aaPredicted RBP16.2■□□□□ 0.18
LIMS3-201ENST00000437679 SPOPLQ6IQ16 392 aa16.2■□□□□ 0.18
LIMS3-201ENST00000437679 ZC3H3Q8IXZ2 948 aaKnown RBP16.2■□□□□ 0.18
LIMS3-201ENST00000437679 B3GALNT2Q8NCR0 500 aa16.2■□□□□ 0.18
LIMS3-201ENST00000437679 TAS1R2Q8TE23 839 aa16.2■□□□□ 0.18
LIMS3-201ENST00000437679 TNIP3Q96KP6 325 aa16.2■□□□□ 0.18
LIMS3-201ENST00000437679 DPEP3Q9H4B8 488 aa16.2■□□□□ 0.18
LIMS3-201ENST00000437679 TASP1Q9H6P5 420 aa16.2■□□□□ 0.18
LIMS3-201ENST00000437679 ZMYM5Q9UJ78 669 aa16.2■□□□□ 0.18
LIMS3-201ENST00000437679 NME7Q9Y5B8 376 aa16.2■□□□□ 0.18
LIMS3-201ENST00000437679 DPYSL4O14531 572 aa16.19■□□□□ 0.18
LIMS3-201ENST00000437679 TRIM66O15016 1216 aa16.19■□□□□ 0.18
LIMS3-201ENST00000437679 NOL4O94818 638 aa16.19■□□□□ 0.18
LIMS3-201ENST00000437679 CD44P16070 742 aaKnown RBP16.19■□□□□ 0.18
LIMS3-201ENST00000437679 PSMC3P17980 439 aa16.19■□□□□ 0.18
LIMS3-201ENST00000437679 VIPR2P41587 438 aa16.19■□□□□ 0.18
LIMS3-201ENST00000437679 MXI1P50539 228 aa16.19■□□□□ 0.18
LIMS3-201ENST00000437679 NLRP12P59046 1061 aa16.19■□□□□ 0.18
LIMS3-201ENST00000437679 MCCD1P59942 119 aaPredicted RBP16.19■□□□□ 0.18
LIMS3-201ENST00000437679 NOP14P78316 857 aaKnown RBP16.19■□□□□ 0.18
LIMS3-201ENST00000437679 CYP4F8P98187 520 aa16.19■□□□□ 0.18
LIMS3-201ENST00000437679 GRM2Q14416 872 aa16.19■□□□□ 0.18
LIMS3-201ENST00000437679 DCAF17Q5H9S7 520 aaPredicted RBP16.19■□□□□ 0.18
LIMS3-201ENST00000437679 TCERG1LQ5VWI1 586 aa16.19■□□□□ 0.18
LIMS3-201ENST00000437679 KLHL10Q6JEL2 608 aa16.19■□□□□ 0.18
LIMS3-201ENST00000437679 ARID3BQ8IVW6 561 aaPredicted RBP16.19■□□□□ 0.18
LIMS3-201ENST00000437679 STKLD1Q8NE28 680 aa16.19■□□□□ 0.18
LIMS3-201ENST00000437679 DEPDC1BQ8WUY9 529 aa16.19■□□□□ 0.18
LIMS3-201ENST00000437679 MRPS31Q92665 395 aaKnown RBP16.19■□□□□ 0.18
LIMS3-201ENST00000437679 TRMT2BQ96GJ1 504 aaKnown RBP16.19■□□□□ 0.18
LIMS3-201ENST00000437679 SHDQ96IW2 340 aa16.19■□□□□ 0.18
LIMS3-201ENST00000437679 CEP295NLQ96MC4 621 aa16.19■□□□□ 0.18
LIMS3-201ENST00000437679 PRRX2Q99811 253 aa16.19■□□□□ 0.18
LIMS3-201ENST00000437679 TRMT61BQ9BVS5 477 aaKnown RBP16.19■□□□□ 0.18
LIMS3-201ENST00000437679 ELOVL4Q9GZR5 314 aa16.19■□□□□ 0.18
LIMS3-201ENST00000437679 SDCBP2Q9H190 292 aa16.19■□□□□ 0.18
LIMS3-201ENST00000437679 BRD9Q9H8M2 597 aa16.19■□□□□ 0.18
LIMS3-201ENST00000437679 UTP3Q9NQZ2 479 aaKnown RBP eCLIP16.19■□□□□ 0.18
LIMS3-201ENST00000437679 ARMCX3Q9UH62 379 aaPredicted RBP16.19■□□□□ 0.18
LIMS3-201ENST00000437679 PTPRDP23468 1912 aa16.19■□□□□ 0.18
LIMS3-201ENST00000437679 ATP8B3O60423 1300 aa16.19■□□□□ 0.18
LIMS3-201ENST00000437679 KMT2EQ8IZD2 1858 aa16.18■□□□□ 0.18
LIMS3-201ENST00000437679 BICDL2A1A5D9 508 aa16.18■□□□□ 0.18
LIMS3-201ENST00000437679 HEPACAM2A8MVW5 462 aa16.18■□□□□ 0.18
LIMS3-201ENST00000437679 F11P03951 625 aa16.18■□□□□ 0.18
LIMS3-201ENST00000437679 NPR3P17342 541 aa16.18■□□□□ 0.18
LIMS3-201ENST00000437679 TRIM21P19474 475 aaKnown RBP16.18■□□□□ 0.18
LIMS3-201ENST00000437679 DDX6P26196 483 aaKnown RBP eCLIP16.18■□□□□ 0.18
LIMS3-201ENST00000437679 ASPAP45381 313 aa16.18■□□□□ 0.18
LIMS3-201ENST00000437679 CAMK4Q16566 473 aa16.18■□□□□ 0.18
LIMS3-201ENST00000437679 SLC44A4Q53GD3 710 aa16.18■□□□□ 0.18
LIMS3-201ENST00000437679 VITQ6UXI7 678 aa16.18■□□□□ 0.18
LIMS3-201ENST00000437679 UNC93AQ86WB7 457 aa16.18■□□□□ 0.18
LIMS3-201ENST00000437679 MFSD6LQ8IWD5 586 aa16.18■□□□□ 0.18
LIMS3-201ENST00000437679 YAF2Q8IY57 180 aa16.18■□□□□ 0.18
LIMS3-201ENST00000437679 TRIML1Q8N9V2 468 aa16.18■□□□□ 0.18
LIMS3-201ENST00000437679 FBXL13Q8NEE6 735 aa16.18■□□□□ 0.18
LIMS3-201ENST00000437679 NELFBQ8WX92 580 aa16.18■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 64.4 ms