RNA–Protein interactions for RNA: ENST00000436346.5

CCDC88A-207, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CCDC88A, Length 9,811 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-207ENST00000436346 UVRAGQ9P2Y5 699 aa12.54□□□□□ -0.4
CCDC88A-207ENST00000436346 CHMP2BQ9UQN3 213 aa12.54□□□□□ -0.4
CCDC88A-207ENST00000436346 DMTNQ08495 405 aa12.54□□□□□ -0.4
CCDC88A-207ENST00000436346 CHMP1BQ7LBR1 199 aa12.54□□□□□ -0.4
CCDC88A-207ENST00000436346 PGM1P36871 562 aa12.54□□□□□ -0.4
CCDC88A-207ENST00000436346 EPHB3P54753 998 aa12.54□□□□□ -0.4
CCDC88A-207ENST00000436346 C9orf131Q5VYM1 1079 aa12.54□□□□□ -0.4
CCDC88A-207ENST00000436346 ERAP2Q6P179 960 aa12.54□□□□□ -0.4
CCDC88A-207ENST00000436346 CYFIP2Q96F07 1278 aa12.54□□□□□ -0.4
CCDC88A-207ENST00000436346 WDR47O94967 919 aa12.54□□□□□ -0.4
CCDC88A-207ENST00000436346 CAMTA2O94983 1202 aa12.54□□□□□ -0.4
CCDC88A-207ENST00000436346 DNAJB2P25686 324 aa12.54□□□□□ -0.4
CCDC88A-207ENST00000436346 TAF6P49848 677 aa12.54□□□□□ -0.4
CCDC88A-207ENST00000436346 TP53BP2Q13625 1128 aa12.54□□□□□ -0.4
CCDC88A-207ENST00000436346 MXRA8Q9BRK3 442 aa12.54□□□□□ -0.4
CCDC88A-207ENST00000436346 CHRM3P20309 590 aa12.54□□□□□ -0.4
CCDC88A-207ENST00000436346 MIB1Q86YT6 1006 aa12.54□□□□□ -0.4
CCDC88A-207ENST00000436346 PHF20Q9BVI0 1012 aa12.54□□□□□ -0.4
CCDC88A-207ENST00000436346 WWP1Q9H0M0 922 aa12.54□□□□□ -0.4
CCDC88A-207ENST00000436346 OSGEPL1Q9H4B0 414 aa12.54□□□□□ -0.4
CCDC88A-207ENST00000436346 ATP11BQ9Y2G3 1177 aa12.54□□□□□ -0.4
CCDC88A-207ENST00000436346 UCHL3P15374 230 aa12.53□□□□□ -0.4
CCDC88A-207ENST00000436346 EIF2B5Q13144 721 aaKnown RBP12.53□□□□□ -0.4
CCDC88A-207ENST00000436346 CAMK2GQ13555 558 aaPredicted RBP12.53□□□□□ -0.4
CCDC88A-207ENST00000436346 CERKQ8TCT0 537 aa12.53□□□□□ -0.4
CCDC88A-207ENST00000436346 KIF2CQ99661 725 aa12.53□□□□□ -0.4
CCDC88A-207ENST00000436346 VCPKMTQ9H867 229 aa12.53□□□□□ -0.4
CCDC88A-207ENST00000436346 PKD2L2Q9NZM6 624 aa12.53□□□□□ -0.4
CCDC88A-207ENST00000436346 TRMT6Q9UJA5 497 aaKnown RBP12.53□□□□□ -0.4
CCDC88A-207ENST00000436346 FHOD1Q9Y613 1164 aa12.53□□□□□ -0.4
CCDC88A-207ENST00000436346 SPACA6W5XKT8 324 aa12.53□□□□□ -0.4
CCDC88A-207ENST00000436346 FOXP2O15409 715 aa12.53□□□□□ -0.4
CCDC88A-207ENST00000436346 PLD1Q13393 1074 aa12.53□□□□□ -0.4
CCDC88A-207ENST00000436346 GOLPH3Q9H4A6 298 aa12.53□□□□□ -0.4
CCDC88A-207ENST00000436346 PDGFCQ9NRA1 345 aa12.53□□□□□ -0.4
CCDC88A-207ENST00000436346 CCDC159P0C7I6 412 aa12.53□□□□□ -0.4
CCDC88A-207ENST00000436346 KLK7P49862 253 aa12.53□□□□□ -0.4
CCDC88A-207ENST00000436346 ARRDC4Q8NCT1 418 aa12.53□□□□□ -0.4
CCDC88A-207ENST00000436346 MRFAP1Q9Y605 127 aa12.53□□□□□ -0.4
CCDC88A-207ENST00000436346 LZTS3O60299 673 aaPredicted RBP12.53□□□□□ -0.4
CCDC88A-207ENST00000436346 AGBL3Q8NEM8 1001 aa12.53□□□□□ -0.4
CCDC88A-207ENST00000436346 TRIM51Q9BSJ1 452 aa12.53□□□□□ -0.4
CCDC88A-207ENST00000436346 NMRK1Q9NWW6 199 aa12.53□□□□□ -0.4
CCDC88A-207ENST00000436346 ZNF521Q96K83 1311 aa12.53□□□□□ -0.4
CCDC88A-207ENST00000436346 MON2Q7Z3U7 1717 aa12.53□□□□□ -0.4
CCDC88A-207ENST00000436346 MYO7AQ13402 2215 aa12.53□□□□□ -0.4
CCDC88A-207ENST00000436346 SEMA3FQ13275 785 aa12.53□□□□□ -0.4
CCDC88A-207ENST00000436346 NBPF9Q3BBW0 867 aa12.53□□□□□ -0.4
CCDC88A-207ENST00000436346 EFHC1Q5JVL4 640 aa12.53□□□□□ -0.4
CCDC88A-207ENST00000436346 C3orf62Q6ZUJ4 267 aa12.53□□□□□ -0.4
CCDC88A-207ENST00000436346 OPTNQ96CV9 577 aa12.53□□□□□ -0.4
CCDC88A-207ENST00000436346 COLEC11Q9BWP8 271 aa12.53□□□□□ -0.4
CCDC88A-207ENST00000436346 DDIT4Q9NX09 232 aa12.53□□□□□ -0.4
CCDC88A-207ENST00000436346 TTC3P53804 2025 aa12.53□□□□□ -0.4
CCDC88A-207ENST00000436346 FAM47E-STBD1D6RA91 191 aa12.53□□□□□ -0.4
CCDC88A-207ENST00000436346 TRIM16O95361 564 aa12.53□□□□□ -0.4
CCDC88A-207ENST00000436346 PCNAP12004 261 aa12.53□□□□□ -0.4
CCDC88A-207ENST00000436346 HERC6Q8IVU3 1022 aa12.53□□□□□ -0.4
CCDC88A-207ENST00000436346 STOML1Q9UBI4 398 aa12.53□□□□□ -0.4
CCDC88A-207ENST00000436346 FAM205CA6NFA0 338 aa12.53□□□□□ -0.4
CCDC88A-207ENST00000436346 DYRK3O43781 588 aa12.53□□□□□ -0.4
CCDC88A-207ENST00000436346 S100A5P33763 92 aa12.53□□□□□ -0.4
CCDC88A-207ENST00000436346 RAP1GAPP47736 663 aa12.53□□□□□ -0.4
CCDC88A-207ENST00000436346 TRAPPC11Q7Z392 1133 aa12.53□□□□□ -0.4
CCDC88A-207ENST00000436346 PLEKHH3Q7Z736 793 aa12.53□□□□□ -0.4
CCDC88A-207ENST00000436346 PLA2G4CQ9UP65 541 aa12.53□□□□□ -0.4
CCDC88A-207ENST00000436346 A0A1W2PQC6 194 aa12.53□□□□□ -0.4
CCDC88A-207ENST00000436346 DGKIO75912 1065 aa12.53□□□□□ -0.4
CCDC88A-207ENST00000436346 TCN1P20061 433 aaPredicted RBP12.53□□□□□ -0.4
CCDC88A-207ENST00000436346 MAPK9P45984 424 aa12.53□□□□□ -0.4
CCDC88A-207ENST00000436346 NEK2P51955 445 aa12.53□□□□□ -0.4
CCDC88A-207ENST00000436346 SLC18A3Q16572 532 aa12.53□□□□□ -0.4
CCDC88A-207ENST00000436346 HIST2H2ACQ16777 129 aaPredicted RBP12.53□□□□□ -0.4
CCDC88A-207ENST00000436346 HIST2H2AA3Q6FI13 130 aa12.53□□□□□ -0.4
CCDC88A-207ENST00000436346 NLRP14Q86W24 1093 aa12.53□□□□□ -0.4
CCDC88A-207ENST00000436346 VPS28Q9UK41 221 aa12.53□□□□□ -0.4
CCDC88A-207ENST00000436346 ATXN3P54252 364 aaPredicted RBP12.52□□□□□ -0.4
CCDC88A-207ENST00000436346 CYTH1Q15438 398 aa12.52□□□□□ -0.4
CCDC88A-207ENST00000436346 AASDHQ4L235 1098 aaPredicted RBP12.52□□□□□ -0.4
CCDC88A-207ENST00000436346 ATP6V0D2Q8N8Y2 350 aa12.52□□□□□ -0.4
CCDC88A-207ENST00000436346 ATG4CQ96DT6 458 aa12.52□□□□□ -0.4
CCDC88A-207ENST00000436346 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP12.52□□□□□ -0.4
CCDC88A-207ENST00000436346 CNTNAP4Q9C0A0 1308 aa12.52□□□□□ -0.4
CCDC88A-207ENST00000436346 RGPD1P0DJD0 1748 aa12.52□□□□□ -0.4
CCDC88A-207ENST00000436346 SPTLC1O15269 473 aa12.52□□□□□ -0.4
CCDC88A-207ENST00000436346 STAU1O95793 577 aaKnown RBP12.52□□□□□ -0.4
CCDC88A-207ENST00000436346 NPEPPSP55786 919 aa12.52□□□□□ -0.4
CCDC88A-207ENST00000436346 DPYDQ12882 1025 aa12.52□□□□□ -0.4
CCDC88A-207ENST00000436346 XRRA1Q6P2D8 792 aa12.52□□□□□ -0.4
CCDC88A-207ENST00000436346 NT5DC4Q86YG4 428 aa12.52□□□□□ -0.4
CCDC88A-207ENST00000436346 ENTPD3O75355 529 aa12.52□□□□□ -0.4
CCDC88A-207ENST00000436346 STAT4Q14765 748 aa12.52□□□□□ -0.4
CCDC88A-207ENST00000436346 PRPF39Q86UA1 669 aaKnown RBP12.52□□□□□ -0.4
CCDC88A-207ENST00000436346 MIER2Q8N344 545 aa12.52□□□□□ -0.4
CCDC88A-207ENST00000436346 ANKRD49Q8WVL7 239 aa12.52□□□□□ -0.4
CCDC88A-207ENST00000436346 WDR24Q96S15 920 aa12.52□□□□□ -0.4
CCDC88A-207ENST00000436346 RUSC1Q9BVN2 902 aa12.52□□□□□ -0.4
CCDC88A-207ENST00000436346 POLR2AP24928 1970 aaKnown RBP12.52□□□□□ -0.41
CCDC88A-207ENST00000436346 SPATA31A5Q5VU36 1347 aa12.52□□□□□ -0.41
CCDC88A-207ENST00000436346 SPATA31A7Q8IWB4 1347 aa12.52□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms