RNA–Protein interactions for RNA: ENST00000425280.1

LDB1-202, Transcript of LIM domain binding 1, humanhuman

TSL 5 BASIC

Gene LDB1, Length 2,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB1-202ENST00000425280 MIOSQ9NXC5 875 aa27.98■■■□□ 2.07
LDB1-202ENST00000425280 PDGFRBP09619 1106 aa27.97■■■□□ 2.07
LDB1-202ENST00000425280 LMO2P25791 158 aa27.97■■■□□ 2.07
LDB1-202ENST00000425280 CHRNA3P32297 505 aa27.97■■■□□ 2.07
LDB1-202ENST00000425280 GJC1P36383 396 aa27.97■■■□□ 2.07
LDB1-202ENST00000425280 KCTD19Q17RG1 926 aaPredicted RBP27.97■■■□□ 2.07
LDB1-202ENST00000425280 ARHGAP17Q68EM7 881 aa27.97■■■□□ 2.07
LDB1-202ENST00000425280 EMBQ6PCB8 327 aa27.97■■■□□ 2.07
LDB1-202ENST00000425280 CRYBG2Q8N1P7 616 aa27.97■■■□□ 2.07
LDB1-202ENST00000425280 IPO4Q8TEX9 1081 aaKnown RBP27.97■■■□□ 2.07
LDB1-202ENST00000425280 MAGOHBQ96A72 148 aaKnown RBP27.97■■■□□ 2.07
LDB1-202ENST00000425280 TRAIPQ9BWF2 469 aa27.97■■■□□ 2.07
LDB1-202ENST00000425280 SNX25Q9H3E2 840 aa27.97■■■□□ 2.07
LDB1-202ENST00000425280 ARL5CA6NH57 179 aa27.96■■■□□ 2.07
LDB1-202ENST00000425280 HUS1O60921 280 aa27.96■■■□□ 2.07
LDB1-202ENST00000425280 DR1Q01658 176 aa27.96■■■□□ 2.07
LDB1-202ENST00000425280 SND1Q7KZF4 910 aaKnown RBP eCLIP27.96■■■□□ 2.07
LDB1-202ENST00000425280 HERPUD2Q9BSE4 406 aa27.96■■■□□ 2.07
LDB1-202ENST00000425280 TSPYL2Q9H2G4 693 aaPredicted RBP27.96■■■□□ 2.07
LDB1-202ENST00000425280 ZNF623O75123 536 aa27.96■■■□□ 2.07
LDB1-202ENST00000425280 THP07101 528 aa27.96■■■□□ 2.07
LDB1-202ENST00000425280 IGFBP6P24592 240 aaPredicted RBP27.96■■■□□ 2.07
LDB1-202ENST00000425280 DHX34Q14147 1143 aaKnown RBP27.96■■■□□ 2.07
LDB1-202ENST00000425280 TTC27Q6P3X3 843 aa27.96■■■□□ 2.07
LDB1-202ENST00000425280 ADGRF2Q8IZF7 708 aa27.96■■■□□ 2.07
LDB1-202ENST00000425280 TOP6BLQ8N6T0 577 aa27.96■■■□□ 2.07
LDB1-202ENST00000425280 EXD1Q8NHP7 514 aa27.96■■■□□ 2.07
LDB1-202ENST00000425280 FNIP1Q8TF40 1166 aa27.96■■■□□ 2.07
LDB1-202ENST00000425280 CACNG4Q9UBN1 327 aa27.96■■■□□ 2.07
LDB1-202ENST00000425280 PSMA2P25787 234 aa27.95■■■□□ 2.07
LDB1-202ENST00000425280 GRK4P32298 578 aa27.95■■■□□ 2.07
LDB1-202ENST00000425280 RAB27AP51159 221 aa27.95■■■□□ 2.07
LDB1-202ENST00000425280 LRRC38Q5VT99 294 aa27.95■■■□□ 2.07
LDB1-202ENST00000425280 SEC14L1Q92503 715 aa27.95■■■□□ 2.07
LDB1-202ENST00000425280 CAVIN3Q969G5 261 aa27.95■■■□□ 2.07
LDB1-202ENST00000425280 TRIM51Q9BSJ1 452 aa27.95■■■□□ 2.07
LDB1-202ENST00000425280 UBXN6Q9BZV1 441 aa27.95■■■□□ 2.07
LDB1-202ENST00000425280 TRPV6Q9H1D0 765 aa27.95■■■□□ 2.07
LDB1-202ENST00000425280 PCYOX1Q9UHG3 505 aa27.95■■■□□ 2.07
LDB1-202ENST00000425280 FRMPD3Q5JV73 1810 aa27.95■■■□□ 2.06
LDB1-202ENST00000425280 A0A1W2PQ45 241 aaPredicted RBP27.95■■■□□ 2.06
LDB1-202ENST00000425280 A0A1W2PQY0 241 aa27.95■■■□□ 2.06
LDB1-202ENST00000425280 E5RJQ4 531 aa27.95■■■□□ 2.06
LDB1-202ENST00000425280 TULP2O00295 520 aa27.95■■■□□ 2.06
LDB1-202ENST00000425280 CUL1Q13616 776 aa27.95■■■□□ 2.06
LDB1-202ENST00000425280 ARHGEF6Q15052 776 aa27.95■■■□□ 2.06
LDB1-202ENST00000425280 ATP13A4Q4VNC1 1196 aa27.95■■■□□ 2.06
LDB1-202ENST00000425280 PMF1Q6P1K2 205 aa27.95■■■□□ 2.06
LDB1-202ENST00000425280 CCDC50Q8IVM0 306 aa27.95■■■□□ 2.06
LDB1-202ENST00000425280 EMC1Q8N766 993 aa27.95■■■□□ 2.06
LDB1-202ENST00000425280 EIF1ADQ8N9N8 165 aaKnown RBP27.95■■■□□ 2.06
LDB1-202ENST00000425280 C12orf50Q8NA57 414 aaPredicted RBP27.95■■■□□ 2.06
LDB1-202ENST00000425280 VIPAS39Q9H9C1 493 aa27.95■■■□□ 2.06
LDB1-202ENST00000425280 HESX1Q9UBX0 185 aa27.95■■■□□ 2.06
LDB1-202ENST00000425280 PIK3R2O00459 728 aa27.94■■■□□ 2.06
LDB1-202ENST00000425280 SETSIPP0DME0 302 aa27.94■■■□□ 2.06
LDB1-202ENST00000425280 WARSP23381 471 aaKnown RBP27.94■■■□□ 2.06
LDB1-202ENST00000425280 PTGIRP43119 386 aa27.94■■■□□ 2.06
LDB1-202ENST00000425280 RGS7P49802 495 aa27.94■■■□□ 2.06
LDB1-202ENST00000425280 SCNN1GP51170 649 aa27.94■■■□□ 2.06
LDB1-202ENST00000425280 OSTM1Q86WC4 334 aa27.94■■■□□ 2.06
LDB1-202ENST00000425280 DDX42Q86XP3 938 aaKnown RBP eCLIP27.94■■■□□ 2.06
LDB1-202ENST00000425280 ZNF784Q8NCA9 323 aaPredicted RBP27.94■■■□□ 2.06
LDB1-202ENST00000425280 ADAM2Q99965 735 aa27.94■■■□□ 2.06
LDB1-202ENST00000425280 HPCAL4Q9UM19 191 aa27.94■■■□□ 2.06
LDB1-202ENST00000425280 UTP11Q9Y3A2 253 aaKnown RBP27.94■■■□□ 2.06
LDB1-202ENST00000425280 FAM187AA6NFU0 413 aa27.93■■■□□ 2.06
LDB1-202ENST00000425280 CYB561D2O14569 222 aa27.93■■■□□ 2.06
LDB1-202ENST00000425280 CAND2O75155 1236 aa27.93■■■□□ 2.06
LDB1-202ENST00000425280 FAM153BP0C7A2 387 aa27.93■■■□□ 2.06
LDB1-202ENST00000425280 FAM153CQ494X1 144 aa27.93■■■□□ 2.06
LDB1-202ENST00000425280 FAM102AQ5T9C2 384 aaPredicted RBP27.93■■■□□ 2.06
LDB1-202ENST00000425280 FAM183BPQ6ZVS7 135 aa27.93■■■□□ 2.06
LDB1-202ENST00000425280 SLC43A3Q8NBI5 491 aa27.93■■■□□ 2.06
LDB1-202ENST00000425280 SLC35F5Q8WV83 523 aa27.93■■■□□ 2.06
LDB1-202ENST00000425280 MIS12Q9H081 205 aa27.93■■■□□ 2.06
LDB1-202ENST00000425280 FAM153AQ9UHL3 310 aa27.93■■■□□ 2.06
LDB1-202ENST00000425280 SQORQ9Y6N5 450 aa27.93■■■□□ 2.06
LDB1-202ENST00000425280 A0A0U1RQF3 1178 aa27.93■■■□□ 2.06
LDB1-202ENST00000425280 RALAP11233 206 aa27.93■■■□□ 2.06
LDB1-202ENST00000425280 CKBP12277 381 aa27.93■■■□□ 2.06
LDB1-202ENST00000425280 CCDC130P13994 396 aa27.93■■■□□ 2.06
LDB1-202ENST00000425280 ECHS1P30084 290 aa27.93■■■□□ 2.06
LDB1-202ENST00000425280 COILP38432 576 aaPredicted RBP27.93■■■□□ 2.06
LDB1-202ENST00000425280 PRMT2P55345 433 aa27.93■■■□□ 2.06
LDB1-202ENST00000425280 NNTQ13423 1086 aa27.93■■■□□ 2.06
LDB1-202ENST00000425280 SMC1AQ14683 1233 aaKnown RBP27.93■■■□□ 2.06
LDB1-202ENST00000425280 CCDC137Q6PK04 289 aaKnown RBP27.93■■■□□ 2.06
LDB1-202ENST00000425280 ANKS1BQ7Z6G8 1248 aa27.93■■■□□ 2.06
LDB1-202ENST00000425280 JAMLQ86YT9 394 aa27.93■■■□□ 2.06
LDB1-202ENST00000425280 ARFGAP1Q8N6T3 406 aa27.93■■■□□ 2.06
LDB1-202ENST00000425280 MAIP1Q8WWC4 291 aa27.93■■■□□ 2.06
LDB1-202ENST00000425280 SLC4A5Q9BY07 1137 aa27.93■■■□□ 2.06
LDB1-202ENST00000425280 KLHL11Q9NVR0 708 aa27.93■■■□□ 2.06
LDB1-202ENST00000425280 TXNRD3NBQ6F5E7 133 aa27.92■■■□□ 2.06
LDB1-202ENST00000425280 OR6B2Q6IFH4 312 aa27.92■■■□□ 2.06
LDB1-202ENST00000425280 RNF169Q8NCN4 708 aa27.92■■■□□ 2.06
LDB1-202ENST00000425280 LRRC19Q9H756 370 aa27.92■■■□□ 2.06
LDB1-202ENST00000425280 PTCH2Q9Y6C5 1203 aa27.92■■■□□ 2.06
LDB1-202ENST00000425280 DAPK3O43293 454 aa27.91■■■□□ 2.06
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms