RNA–Protein interactions for RNA: ENST00000416400.1

VPS54-204, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS54, Length 1,277 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-204ENST00000416400 SMOQ99835 787 aa5.52□□□□□ -1.53
VPS54-204ENST00000416400 TLR10Q9BXR5 811 aa5.52□□□□□ -1.53
VPS54-204ENST00000416400 MYLK2Q9H1R3 596 aa5.52□□□□□ -1.53
VPS54-204ENST00000416400 TM7SF3Q9NS93 570 aa5.52□□□□□ -1.53
VPS54-204ENST00000416400 TBC1D23Q9NUY8 699 aa5.52□□□□□ -1.53
VPS54-204ENST00000416400 HESX1Q9UBX0 185 aa5.52□□□□□ -1.53
VPS54-204ENST00000416400 RGS17Q9UGC6 210 aaPredicted RBP5.52□□□□□ -1.53
VPS54-204ENST00000416400 MID2Q9UJV3 735 aa5.52□□□□□ -1.53
VPS54-204ENST00000416400 SLC39A10Q9ULF5 831 aa5.52□□□□□ -1.53
VPS54-204ENST00000416400 CDYLQ9Y232 598 aa5.52□□□□□ -1.53
VPS54-204ENST00000416400 CHST2Q9Y4C5 530 aa5.52□□□□□ -1.53
VPS54-204ENST00000416400 DGKBQ9Y6T7 804 aa5.52□□□□□ -1.53
VPS54-204ENST00000416400 POLRMTO00411 1230 aaKnown RBP5.51□□□□□ -1.53
VPS54-204ENST00000416400 TLR5O60602 858 aa5.51□□□□□ -1.53
VPS54-204ENST00000416400 CYP2C9P11712 490 aa5.51□□□□□ -1.53
VPS54-204ENST00000416400 FCER1AP12319 257 aa5.51□□□□□ -1.53
VPS54-204ENST00000416400 XRCC6P12956 609 aaKnown RBP eCLIP5.51□□□□□ -1.53
VPS54-204ENST00000416400 MAKP20794 623 aa5.51□□□□□ -1.53
VPS54-204ENST00000416400 ACVR2AP27037 513 aa5.51□□□□□ -1.53
VPS54-204ENST00000416400 PDIA3P30101 505 aaKnown RBP5.51□□□□□ -1.53
VPS54-204ENST00000416400 VIPR2P41587 438 aa5.51□□□□□ -1.53
VPS54-204ENST00000416400 HSD11B2P80365 405 aa5.51□□□□□ -1.53
VPS54-204ENST00000416400 DGCR2P98153 550 aa5.51□□□□□ -1.53
VPS54-204ENST00000416400 SLFN5Q08AF3 891 aa5.51□□□□□ -1.53
VPS54-204ENST00000416400 TCF15Q12870 199 aa5.51□□□□□ -1.53
VPS54-204ENST00000416400 SLC29A2Q14542 456 aa5.51□□□□□ -1.53
VPS54-204ENST00000416400 GGT6Q6P531 493 aa5.51□□□□□ -1.53
VPS54-204ENST00000416400 KCNV1Q6PIU1 500 aa5.51□□□□□ -1.53
VPS54-204ENST00000416400 LDHAL6AQ6ZMR3 332 aa5.51□□□□□ -1.53
VPS54-204ENST00000416400 CCDC150Q8NCX0 1101 aa5.51□□□□□ -1.53
VPS54-204ENST00000416400 ZNF483Q8TF39 744 aaPredicted RBP5.51□□□□□ -1.53
VPS54-204ENST00000416400 RAPGEF4Q8WZA2 1011 aa5.51□□□□□ -1.53
VPS54-204ENST00000416400 C18orf8Q96DM3 657 aa5.51□□□□□ -1.53
VPS54-204ENST00000416400 RNF31Q96EP0 1072 aa5.51□□□□□ -1.53
VPS54-204ENST00000416400 MOGAT1Q96PD6 335 aa5.51□□□□□ -1.53
VPS54-204ENST00000416400 MED15Q96RN5 788 aa5.51□□□□□ -1.53
VPS54-204ENST00000416400 PPP1R9BQ96SB3 815 aa5.51□□□□□ -1.53
VPS54-204ENST00000416400 HEPHQ9BQS7 1158 aa5.51□□□□□ -1.53
VPS54-204ENST00000416400 ZSWIM1Q9BR11 485 aa5.51□□□□□ -1.53
VPS54-204ENST00000416400 MAGEB5Q9BZ81 275 aa5.51□□□□□ -1.53
VPS54-204ENST00000416400 ZSCAN32Q9NX65 697 aa5.51□□□□□ -1.53
VPS54-204ENST00000416400 FZD1Q9UP38 647 aa5.51□□□□□ -1.53
VPS54-204ENST00000416400 FAM234BA2RU67 622 aa5.5□□□□□ -1.53
VPS54-204ENST00000416400 VPS4BO75351 444 aa5.5□□□□□ -1.53
VPS54-204ENST00000416400 INMTO95050 263 aa5.5□□□□□ -1.53
VPS54-204ENST00000416400 PRSS23O95084 383 aa5.5□□□□□ -1.53
VPS54-204ENST00000416400 NDST3O95803 873 aa5.5□□□□□ -1.53
VPS54-204ENST00000416400 FGFR4P22455 802 aa5.5□□□□□ -1.53
VPS54-204ENST00000416400 FDXRP22570 491 aa5.5□□□□□ -1.53
VPS54-204ENST00000416400 DDX6P26196 483 aaKnown RBP eCLIP5.5□□□□□ -1.53
VPS54-204ENST00000416400 MCM7P33993 719 aa5.5□□□□□ -1.53
VPS54-204ENST00000416400 CCT5P48643 541 aa5.5□□□□□ -1.53
VPS54-204ENST00000416400 RENBPP51606 427 aa5.5□□□□□ -1.53
VPS54-204ENST00000416400 SLC25A3Q00325 362 aa5.5□□□□□ -1.53
VPS54-204ENST00000416400 SATB1Q01826 763 aa5.5□□□□□ -1.53
VPS54-204ENST00000416400 RESTQ13127 1097 aa5.5□□□□□ -1.53
VPS54-204ENST00000416400 PTPAQ15257 358 aa5.5□□□□□ -1.53
VPS54-204ENST00000416400 ZACNQ401N2 412 aa5.5□□□□□ -1.53
VPS54-204ENST00000416400 LY6G5CQ5SRR4 150 aa5.5□□□□□ -1.53
VPS54-204ENST00000416400 ZFPM1Q8IX07 1006 aa5.5□□□□□ -1.53
VPS54-204ENST00000416400 CFAP52Q8N1V2 620 aa5.5□□□□□ -1.53
VPS54-204ENST00000416400 VGLL2Q8N8G2 317 aa5.5□□□□□ -1.53
VPS54-204ENST00000416400 CYP2W1Q8TAV3 490 aa5.5□□□□□ -1.53
VPS54-204ENST00000416400 RMDN3Q96TC7 470 aa5.5□□□□□ -1.53
VPS54-204ENST00000416400 ISCA1Q9BUE6 129 aa5.5□□□□□ -1.53
VPS54-204ENST00000416400 ZNF747Q9BV97 191 aa5.5□□□□□ -1.53
VPS54-204ENST00000416400 TTYH3Q9C0H2 523 aa5.5□□□□□ -1.53
VPS54-204ENST00000416400 ZNF768Q9H5H4 540 aaKnown RBP5.5□□□□□ -1.53
VPS54-204ENST00000416400 HEYLQ9NQ87 328 aaPredicted RBP5.5□□□□□ -1.53
VPS54-204ENST00000416400 SLC2A4RGQ9NR83 387 aa5.5□□□□□ -1.53
VPS54-204ENST00000416400 MRPS18AQ9NVS2 196 aaKnown RBP5.5□□□□□ -1.53
VPS54-204ENST00000416400 MAP3K2Q9Y2U5 619 aa5.5□□□□□ -1.53
VPS54-204ENST00000416400 NEU2Q9Y3R4 380 aa5.5□□□□□ -1.53
VPS54-204ENST00000416400 PCDHGB3Q9Y5G1 929 aa5.5□□□□□ -1.53
VPS54-204ENST00000416400 AATKQ6ZMQ8 1374 aa5.5□□□□□ -1.53
VPS54-204ENST00000416400 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa5.49□□□□□ -1.53
VPS54-204ENST00000416400 LOC102723971A0A1B0GUV8 181 aa5.49□□□□□ -1.53
VPS54-204ENST00000416400 NPIPB8E9PQR5 432 aa5.49□□□□□ -1.53
VPS54-204ENST00000416400 RAB27BO00194 218 aa5.49□□□□□ -1.53
VPS54-204ENST00000416400 MATN3O15232 486 aa5.49□□□□□ -1.53
VPS54-204ENST00000416400 CCP110O43303 1012 aa5.49□□□□□ -1.53
VPS54-204ENST00000416400 SH3BP5O60239 455 aa5.49□□□□□ -1.53
VPS54-204ENST00000416400 ZNF202O95125 648 aa5.49□□□□□ -1.53
VPS54-204ENST00000416400 A1BGP04217 495 aa5.49□□□□□ -1.53
VPS54-204ENST00000416400 CFIP05156 583 aa5.49□□□□□ -1.53
VPS54-204ENST00000416400 ADH4P08319 380 aa5.49□□□□□ -1.53
VPS54-204ENST00000416400 IDEP14735 1019 aa5.49□□□□□ -1.53
VPS54-204ENST00000416400 BMPR1AP36894 532 aa5.49□□□□□ -1.53
VPS54-204ENST00000416400 GUCY1B3Q02153 619 aa5.49□□□□□ -1.53
VPS54-204ENST00000416400 POU5F1BQ06416 359 aa5.49□□□□□ -1.53
VPS54-204ENST00000416400 IQCB1Q15051 598 aa5.49□□□□□ -1.53
VPS54-204ENST00000416400 PFKFB4Q16877 469 aa5.49□□□□□ -1.53
VPS54-204ENST00000416400 PREPLQ4J6C6 727 aaPredicted RBP5.49□□□□□ -1.53
VPS54-204ENST00000416400 METRNLQ641Q3 311 aa5.49□□□□□ -1.53
VPS54-204ENST00000416400 TAPT1Q6NXT6 567 aa5.49□□□□□ -1.53
VPS54-204ENST00000416400 ZDHHC24Q6UX98 284 aa5.49□□□□□ -1.53
VPS54-204ENST00000416400 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP5.49□□□□□ -1.53
VPS54-204ENST00000416400 COLGALT2Q8IYK4 626 aa5.49□□□□□ -1.53
VPS54-204ENST00000416400 CACNA2D3Q8IZS8 1091 aa5.49□□□□□ -1.53
VPS54-204ENST00000416400 TMEM132CQ8N3T6 1108 aa5.49□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms