RNA–Protein interactions for RNA: ENST00000413186.6

SYNE1-211, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 4,860 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-211ENST00000413186 TLDC2A0PJX2 215 aa8.94□□□□□ -0.98
SYNE1-211ENST00000413186 CCDC85CA6NKD9 419 aa8.94□□□□□ -0.98
SYNE1-211ENST00000413186 CYBBP04839 570 aa8.94□□□□□ -0.98
SYNE1-211ENST00000413186 FAM228BP0C875 321 aa8.94□□□□□ -0.98
SYNE1-211ENST00000413186 CXCR5P32302 372 aa8.94□□□□□ -0.98
SYNE1-211ENST00000413186 SSTR3P32745 418 aaPredicted RBP8.94□□□□□ -0.98
SYNE1-211ENST00000413186 TNFSF9P41273 254 aa8.94□□□□□ -0.98
SYNE1-211ENST00000413186 CDH6P55285 790 aa8.94□□□□□ -0.98
SYNE1-211ENST00000413186 BCAR1P56945 870 aa8.94□□□□□ -0.98
SYNE1-211ENST00000413186 DEUP1Q05D60 604 aa8.94□□□□□ -0.98
SYNE1-211ENST00000413186 C1QBPQ07021 282 aaKnown RBP8.94□□□□□ -0.98
SYNE1-211ENST00000413186 ZCWPW2Q504Y3 356 aa8.94□□□□□ -0.98
SYNE1-211ENST00000413186 ZDHHC17Q8IUH5 632 aa8.94□□□□□ -0.98
SYNE1-211ENST00000413186 RCOR2Q8IZ40 523 aa8.94□□□□□ -0.98
SYNE1-211ENST00000413186 SREK1IP1Q8N9Q2 155 aaPredicted RBP8.94□□□□□ -0.98
SYNE1-211ENST00000413186 PPP1R14CQ8TAE6 165 aa8.94□□□□□ -0.98
SYNE1-211ENST00000413186 HASPINQ8TF76 798 aa8.94□□□□□ -0.98
SYNE1-211ENST00000413186 EXOC4Q96A65 974 aa8.94□□□□□ -0.98
SYNE1-211ENST00000413186 MCEEQ96PE7 176 aa8.94□□□□□ -0.98
SYNE1-211ENST00000413186 NXF3Q9H4D5 531 aaKnown RBP8.94□□□□□ -0.98
SYNE1-211ENST00000413186 FBXO44Q9H4M3 255 aa8.94□□□□□ -0.98
SYNE1-211ENST00000413186 TRMT13Q9NUP7 481 aaKnown RBP8.94□□□□□ -0.98
SYNE1-211ENST00000413186 SIK3Q9Y2K2 1263 aa8.94□□□□□ -0.98
SYNE1-211ENST00000413186 LAMB1P07942 1786 aa8.94□□□□□ -0.98
SYNE1-211ENST00000413186 MYO5AQ9Y4I1 1855 aaKnown RBP8.94□□□□□ -0.98
SYNE1-211ENST00000413186 PAPPA2Q9BXP8 1791 aa8.94□□□□□ -0.98
SYNE1-211ENST00000413186 ASS1P00966 412 aaKnown RBP8.94□□□□□ -0.98
SYNE1-211ENST00000413186 XPAP23025 273 aaPredicted RBP8.94□□□□□ -0.98
SYNE1-211ENST00000413186 EPHB3P54753 998 aa8.94□□□□□ -0.98
SYNE1-211ENST00000413186 ZNF200P98182 395 aaPredicted RBP8.94□□□□□ -0.98
SYNE1-211ENST00000413186 TARBP2Q15633 366 aaKnown RBP8.94□□□□□ -0.98
SYNE1-211ENST00000413186 EPC2Q52LR7 807 aa8.94□□□□□ -0.98
SYNE1-211ENST00000413186 BOLA3Q53S33 107 aa8.94□□□□□ -0.98
SYNE1-211ENST00000413186 DNAJC21Q5F1R6 531 aaKnown RBP8.94□□□□□ -0.98
SYNE1-211ENST00000413186 MDH1BQ5I0G3 518 aa8.94□□□□□ -0.98
SYNE1-211ENST00000413186 CYP4A22Q5TCH4 519 aa8.94□□□□□ -0.98
SYNE1-211ENST00000413186 SMARCD1Q96GM5 515 aa8.94□□□□□ -0.98
SYNE1-211ENST00000413186 C16orf70Q9BSU1 422 aa8.94□□□□□ -0.98
SYNE1-211ENST00000413186 RRN3Q9NYV6 651 aa8.94□□□□□ -0.98
SYNE1-211ENST00000413186 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP8.94□□□□□ -0.98
SYNE1-211ENST00000413186 SLC4A7Q9Y6M7 1214 aa8.94□□□□□ -0.98
SYNE1-211ENST00000413186 IGKV6D-21A0A0A0MT36 114 aa8.94□□□□□ -0.98
SYNE1-211ENST00000413186 FGBP02675 491 aa8.94□□□□□ -0.98
SYNE1-211ENST00000413186 ITIH3Q06033 890 aa8.94□□□□□ -0.98
SYNE1-211ENST00000413186 FAPQ12884 760 aa8.94□□□□□ -0.98
SYNE1-211ENST00000413186 SKIV2LQ15477 1246 aaKnown RBP8.94□□□□□ -0.98
SYNE1-211ENST00000413186 PALM2Q8IXS6 379 aa8.94□□□□□ -0.98
SYNE1-211ENST00000413186 MRPS31Q92665 395 aaKnown RBP8.94□□□□□ -0.98
SYNE1-211ENST00000413186 SELENOSQ9BQE4 189 aa8.94□□□□□ -0.98
SYNE1-211ENST00000413186 BCAS3Q9H6U6 928 aa8.94□□□□□ -0.98
SYNE1-211ENST00000413186 DMAC2Q9NW81 257 aa8.94□□□□□ -0.98
SYNE1-211ENST00000413186 UBAP1Q9NZ09 502 aa8.94□□□□□ -0.98
SYNE1-211ENST00000413186 A0A1W2PQ45 241 aaPredicted RBP8.94□□□□□ -0.98
SYNE1-211ENST00000413186 A0A1W2PQY0 241 aa8.94□□□□□ -0.98
SYNE1-211ENST00000413186 MMEP08473 750 aa8.94□□□□□ -0.98
SYNE1-211ENST00000413186 COL6A1P12109 1028 aa8.94□□□□□ -0.98
SYNE1-211ENST00000413186 CTNNA1P35221 906 aaKnown RBP8.94□□□□□ -0.98
SYNE1-211ENST00000413186 DLG4P78352 724 aa8.94□□□□□ -0.98
SYNE1-211ENST00000413186 DRP2Q13474 957 aa8.94□□□□□ -0.98
SYNE1-211ENST00000413186 RNF219Q5W0B1 726 aaPredicted RBP8.94□□□□□ -0.98
SYNE1-211ENST00000413186 BSPRYQ5W0U4 402 aa8.94□□□□□ -0.98
SYNE1-211ENST00000413186 FBXO38Q6PIJ6 1188 aa8.94□□□□□ -0.98
SYNE1-211ENST00000413186 ARHGEF19Q8IW93 802 aa8.94□□□□□ -0.98
SYNE1-211ENST00000413186 RNF25Q96BH1 459 aaPredicted RBP8.94□□□□□ -0.98
SYNE1-211ENST00000413186 FAXDC2Q96IV6 333 aa8.94□□□□□ -0.98
SYNE1-211ENST00000413186 CDK5RAP1Q96SZ6 601 aaKnown RBP8.94□□□□□ -0.98
SYNE1-211ENST00000413186 DMAP1Q9NPF5 467 aaPredicted RBP8.94□□□□□ -0.98
SYNE1-211ENST00000413186 TRPM5Q9NZQ8 1165 aa8.94□□□□□ -0.98
SYNE1-211ENST00000413186 IPO11Q9UI26 975 aaKnown RBP8.94□□□□□ -0.98
SYNE1-211ENST00000413186 SQORQ9Y6N5 450 aa8.94□□□□□ -0.98
SYNE1-211ENST00000413186 SMIM28A0A1B0GU29 152 aa8.93□□□□□ -0.98
SYNE1-211ENST00000413186 USP27XA6NNY8 438 aa8.93□□□□□ -0.98
SYNE1-211ENST00000413186 NDUFAB1O14561 156 aa8.93□□□□□ -0.98
SYNE1-211ENST00000413186 SERPINI2O75830 405 aa8.93□□□□□ -0.98
SYNE1-211ENST00000413186 MOCS2O96007 188 aaPredicted RBP8.93□□□□□ -0.98
SYNE1-211ENST00000413186 CLTBP09497 229 aa8.93□□□□□ -0.98
SYNE1-211ENST00000413186 LAG3P18627 525 aa8.93□□□□□ -0.98
SYNE1-211ENST00000413186 NNMTP40261 264 aa8.93□□□□□ -0.98
SYNE1-211ENST00000413186 RAP1GAPP47736 663 aa8.93□□□□□ -0.98
SYNE1-211ENST00000413186 EIF3BP55884 814 aaKnown RBP8.93□□□□□ -0.98
SYNE1-211ENST00000413186 MTA1Q13330 715 aa8.93□□□□□ -0.98
SYNE1-211ENST00000413186 DCAF6Q58WW2 860 aa8.93□□□□□ -0.98
SYNE1-211ENST00000413186 ANKS3Q6ZW76 656 aa8.93□□□□□ -0.98
SYNE1-211ENST00000413186 YAF2Q8IY57 180 aa8.93□□□□□ -0.98
SYNE1-211ENST00000413186 TOP6BLQ8N6T0 577 aa8.93□□□□□ -0.98
SYNE1-211ENST00000413186 FBXO32Q969P5 355 aa8.93□□□□□ -0.98
SYNE1-211ENST00000413186 L2HGDHQ9H9P8 463 aa8.93□□□□□ -0.98
SYNE1-211ENST00000413186 KRT82Q9NSB4 513 aa8.93□□□□□ -0.98
SYNE1-211ENST00000413186 CDH9Q9ULB4 789 aa8.93□□□□□ -0.98
SYNE1-211ENST00000413186 CREB3O43889 395 aa8.93□□□□□ -0.98
SYNE1-211ENST00000413186 TADA3O75528 432 aa8.93□□□□□ -0.98
SYNE1-211ENST00000413186 HEXIM1O94992 359 aaKnown RBP8.93□□□□□ -0.98
SYNE1-211ENST00000413186 PNMA6AP0CW24 399 aaPredicted RBP8.93□□□□□ -0.98
SYNE1-211ENST00000413186 ALDH3A1P30838 453 aa8.93□□□□□ -0.98
SYNE1-211ENST00000413186 RFC2P35250 354 aa8.93□□□□□ -0.98
SYNE1-211ENST00000413186 PRKCIP41743 596 aa8.93□□□□□ -0.98
SYNE1-211ENST00000413186 RECQLP46063 649 aaPredicted RBP8.93□□□□□ -0.98
SYNE1-211ENST00000413186 GUCY2DQ02846 1103 aa8.93□□□□□ -0.98
SYNE1-211ENST00000413186 CLEC16AQ2KHT3 1053 aa8.93□□□□□ -0.98
SYNE1-211ENST00000413186 MIIPQ5JXC2 388 aa8.93□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms