RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 HEPHQ9BQS7 1158 aa4.6□□□□□ -1.67
HMGB1-204ENST00000399489 PDCD2LQ9BRP1 358 aa4.6□□□□□ -1.67
HMGB1-204ENST00000399489 ANO3Q9BYT9 981 aa4.6□□□□□ -1.67
HMGB1-204ENST00000399489 PREBQ9HCU5 417 aa4.6□□□□□ -1.67
HMGB1-204ENST00000399489 TLR9Q9NR96 1032 aa4.6□□□□□ -1.67
HMGB1-204ENST00000399489 KRT84Q9NSB2 600 aa4.6□□□□□ -1.67
HMGB1-204ENST00000399489 GJB4Q9NTQ9 266 aa4.6□□□□□ -1.67
HMGB1-204ENST00000399489 HAUS2Q9NVX0 235 aa4.6□□□□□ -1.67
HMGB1-204ENST00000399489 MYO1AQ9UBC5 1043 aa4.6□□□□□ -1.67
HMGB1-204ENST00000399489 SRP68Q9UHB9 627 aaKnown RBP4.6□□□□□ -1.67
HMGB1-204ENST00000399489 ZNF711Q9Y462 761 aa4.6□□□□□ -1.67
HMGB1-204ENST00000399489 SOS1Q07889 1333 aaPredicted RBP4.59□□□□□ -1.67
HMGB1-204ENST00000399489 CAPN14A8MX76 684 aa4.59□□□□□ -1.67
HMGB1-204ENST00000399489 ISM1B1AKI9 464 aa4.59□□□□□ -1.67
HMGB1-204ENST00000399489 FGFR2P21802 821 aa4.59□□□□□ -1.67
HMGB1-204ENST00000399489 TDO2P48775 406 aa4.59□□□□□ -1.67
HMGB1-204ENST00000399489 CASP6P55212 293 aa4.59□□□□□ -1.67
HMGB1-204ENST00000399489 BCAR1P56945 870 aa4.59□□□□□ -1.67
HMGB1-204ENST00000399489 VAMP2P63027 116 aa4.59□□□□□ -1.67
HMGB1-204ENST00000399489 FMO1Q01740 532 aa4.59□□□□□ -1.67
HMGB1-204ENST00000399489 FOXL1Q12952 345 aa4.59□□□□□ -1.67
HMGB1-204ENST00000399489 CUL4AQ13619 759 aa4.59□□□□□ -1.67
HMGB1-204ENST00000399489 PTK2BQ14289 1009 aa4.59□□□□□ -1.67
HMGB1-204ENST00000399489 SMAD1Q15797 465 aaKnown RBP4.59□□□□□ -1.67
HMGB1-204ENST00000399489 CNGA2Q16280 664 aa4.59□□□□□ -1.67
HMGB1-204ENST00000399489 TBR1Q16650 682 aa4.59□□□□□ -1.67
HMGB1-204ENST00000399489 CCDC62Q6P9F0 684 aa4.59□□□□□ -1.67
HMGB1-204ENST00000399489 B4GALNT4Q76KP1 1039 aa4.59□□□□□ -1.67
HMGB1-204ENST00000399489 CATSPER4Q7RTX7 472 aa4.59□□□□□ -1.67
HMGB1-204ENST00000399489 KDELC2Q7Z4H8 507 aa4.59□□□□□ -1.67
HMGB1-204ENST00000399489 GALNTL5Q7Z4T8 443 aa4.59□□□□□ -1.67
HMGB1-204ENST00000399489 IQCA1Q86XH1 822 aa4.59□□□□□ -1.67
HMGB1-204ENST00000399489 CREB3L4Q8TEY5 395 aa4.59□□□□□ -1.67
HMGB1-204ENST00000399489 ASB15Q8WXK1 588 aa4.59□□□□□ -1.67
HMGB1-204ENST00000399489 ZUFSPQ96AP4 578 aa4.59□□□□□ -1.67
HMGB1-204ENST00000399489 RAX2Q96IS3 184 aa4.59□□□□□ -1.67
HMGB1-204ENST00000399489 JAKMIP1Q96N16 626 aaKnown RBP4.59□□□□□ -1.67
HMGB1-204ENST00000399489 AMNQ9BXJ7 453 aa4.59□□□□□ -1.67
HMGB1-204ENST00000399489 SENP6Q9GZR1 1112 aaPredicted RBP4.59□□□□□ -1.67
HMGB1-204ENST00000399489 ZWILCHQ9H900 591 aa4.59□□□□□ -1.67
HMGB1-204ENST00000399489 ARMT1Q9H993 441 aa4.59□□□□□ -1.67
HMGB1-204ENST00000399489 ACSS2Q9NR19 701 aa4.59□□□□□ -1.67
HMGB1-204ENST00000399489 PARPBPQ9NWS1 579 aa4.59□□□□□ -1.67
HMGB1-204ENST00000399489 TMEM160Q9NX00 188 aa4.59□□□□□ -1.67
HMGB1-204ENST00000399489 FEM1BQ9UK73 627 aa4.59□□□□□ -1.67
HMGB1-204ENST00000399489 VWA7Q9Y334 891 aa4.59□□□□□ -1.67
HMGB1-204ENST00000399489 FAM234BA2RU67 622 aa4.58□□□□□ -1.68
HMGB1-204ENST00000399489 MATN2O00339 956 aa4.58□□□□□ -1.68
HMGB1-204ENST00000399489 MPIG6BO95866 241 aa4.58□□□□□ -1.68
HMGB1-204ENST00000399489 CYP17A1P05093 508 aa4.58□□□□□ -1.68
HMGB1-204ENST00000399489 LPLP06858 475 aa4.58□□□□□ -1.68
HMGB1-204ENST00000399489 BRAFP15056 766 aa4.58□□□□□ -1.68
HMGB1-204ENST00000399489 MAKP20794 623 aa4.58□□□□□ -1.68
HMGB1-204ENST00000399489 PAPOLAP51003 745 aaKnown RBP4.58□□□□□ -1.68
HMGB1-204ENST00000399489 HTRA4P83105 476 aaPredicted RBP4.58□□□□□ -1.68
HMGB1-204ENST00000399489 CRHR2Q13324 411 aa4.58□□□□□ -1.68
HMGB1-204ENST00000399489 TUBA3CQ13748 450 aa4.58□□□□□ -1.68
HMGB1-204ENST00000399489 TMEM132BQ14DG7 1078 aa4.58□□□□□ -1.68
HMGB1-204ENST00000399489 TSTQ16762 297 aaKnown RBP4.58□□□□□ -1.68
HMGB1-204ENST00000399489 ADCK5Q3MIX3 580 aa4.58□□□□□ -1.68
HMGB1-204ENST00000399489 TTC31Q49AM3 519 aaPredicted RBP4.58□□□□□ -1.68
HMGB1-204ENST00000399489 KANK2Q63ZY3 851 aa4.58□□□□□ -1.68
HMGB1-204ENST00000399489 RPUSD3Q6P087 351 aaKnown RBP4.58□□□□□ -1.68
HMGB1-204ENST00000399489 TUBA3EQ6PEY2 450 aa4.58□□□□□ -1.68
HMGB1-204ENST00000399489 LRSAM1Q6UWE0 723 aa4.58□□□□□ -1.68
HMGB1-204ENST00000399489 FAM47EQ6ZV65 393 aa4.58□□□□□ -1.68
HMGB1-204ENST00000399489 ANKRD35Q8N283 1001 aa4.58□□□□□ -1.68
HMGB1-204ENST00000399489 TXLNBQ8N3L3 684 aa4.58□□□□□ -1.68
HMGB1-204ENST00000399489 NAT8LQ8N9F0 302 aa4.58□□□□□ -1.68
HMGB1-204ENST00000399489 ATP11CQ8NB49 1132 aa4.58□□□□□ -1.68
HMGB1-204ENST00000399489 FAM71BQ8TC56 605 aa4.58□□□□□ -1.68
HMGB1-204ENST00000399489 DESI2Q9BSY9 194 aa4.58□□□□□ -1.68
HMGB1-204ENST00000399489 BRIP1Q9BX63 1249 aa4.58□□□□□ -1.68
HMGB1-204ENST00000399489 MTRRQ9UBK8 725 aa4.58□□□□□ -1.68
HMGB1-204ENST00000399489 SEL1LQ9UBV2 794 aa4.58□□□□□ -1.68
HMGB1-204ENST00000399489 C19orf53Q9UNZ5 99 aaPredicted RBP4.58□□□□□ -1.68
HMGB1-204ENST00000399489 RRP7AQ9Y3A4 280 aaKnown RBP4.58□□□□□ -1.68
HMGB1-204ENST00000399489 B3GALT1Q9Y5Z6 326 aa4.58□□□□□ -1.68
HMGB1-204ENST00000399489 RB1CC1Q8TDY2 1594 aa4.58□□□□□ -1.68
HMGB1-204ENST00000399489 CCDC196A0A1B0GTZ2 297 aa4.58□□□□□ -1.68
HMGB1-204ENST00000399489 C17orf113A0A1B0GUU1 675 aa4.58□□□□□ -1.68
HMGB1-204ENST00000399489 A0A1W2PPL8 197 aa4.58□□□□□ -1.68
HMGB1-204ENST00000399489 TMEM63AO94886 807 aa4.58□□□□□ -1.68
HMGB1-204ENST00000399489 TNFRSF6BO95407 300 aa4.58□□□□□ -1.68
HMGB1-204ENST00000399489 JUPP14923 745 aa4.58□□□□□ -1.68
HMGB1-204ENST00000399489 ATF7P17544 494 aaPredicted RBP4.58□□□□□ -1.68
HMGB1-204ENST00000399489 IL11P20809 199 aa4.58□□□□□ -1.68
HMGB1-204ENST00000399489 SLC7A1P30825 629 aa4.58□□□□□ -1.68
HMGB1-204ENST00000399489 SDHAP31040 664 aa4.58□□□□□ -1.68
HMGB1-204ENST00000399489 TNNT3P45378 269 aaPredicted RBP4.58□□□□□ -1.68
HMGB1-204ENST00000399489 SEC24CP53992 1094 aa4.58□□□□□ -1.68
HMGB1-204ENST00000399489 INHBCP55103 352 aa4.58□□□□□ -1.68
HMGB1-204ENST00000399489 INHBEP58166 350 aa4.58□□□□□ -1.68
HMGB1-204ENST00000399489 DSC2Q02487 901 aa4.58□□□□□ -1.68
HMGB1-204ENST00000399489 UBE3AQ05086 875 aa4.58□□□□□ -1.68
HMGB1-204ENST00000399489 DPTQ07507 201 aa4.58□□□□□ -1.68
HMGB1-204ENST00000399489 DUSP8Q13202 625 aa4.58□□□□□ -1.68
HMGB1-204ENST00000399489 FGL2Q14314 439 aa4.58□□□□□ -1.68
HMGB1-204ENST00000399489 DLGAP5Q15398 846 aa4.58□□□□□ -1.68
HMGB1-204ENST00000399489 CCDC157Q569K6 752 aa4.58□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms