RNA–Protein interactions for RNA: ENST00000399455.2

USP47-203, Transcript of ubiquitin specific peptidase 47, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene USP47, Length 7,396 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-203ENST00000399455 COL1A2P08123 1366 aa8.3□□□□□ -1.08
USP47-203ENST00000399455 GRID2IPA4D2P6 1211 aa8.3□□□□□ -1.08
USP47-203ENST00000399455 MFAP3LO75121 409 aa8.3□□□□□ -1.08
USP47-203ENST00000399455 HALP42357 657 aa8.3□□□□□ -1.08
USP47-203ENST00000399455 NCKAP1LP55160 1127 aa8.3□□□□□ -1.08
USP47-203ENST00000399455 BST2Q10589 180 aaKnown RBP8.3□□□□□ -1.08
USP47-203ENST00000399455 CTU1Q7Z7A3 348 aaKnown RBP8.3□□□□□ -1.08
USP47-203ENST00000399455 HOMEZQ8IX15 550 aa8.3□□□□□ -1.08
USP47-203ENST00000399455 RFFLQ8WZ73 363 aa8.3□□□□□ -1.08
USP47-203ENST00000399455 SENP2Q9HC62 589 aa8.3□□□□□ -1.08
USP47-203ENST00000399455 DYRK1BQ9Y463 629 aa8.3□□□□□ -1.08
USP47-203ENST00000399455 TBC1D3BA6NDS4 549 aa8.29□□□□□ -1.08
USP47-203ENST00000399455 C1QTNF3-AMACRE9PGA6 284 aa8.29□□□□□ -1.08
USP47-203ENST00000399455 STX7O15400 261 aaKnown RBP8.29□□□□□ -1.08
USP47-203ENST00000399455 WEE2P0C1S8 567 aa8.29□□□□□ -1.08
USP47-203ENST00000399455 KCNA2P16389 499 aa8.29□□□□□ -1.08
USP47-203ENST00000399455 SHMT1P34896 483 aa8.29□□□□□ -1.08
USP47-203ENST00000399455 CXCL17Q6UXB2 119 aa8.29□□□□□ -1.08
USP47-203ENST00000399455 SYT15Q9BQS2 421 aa8.29□□□□□ -1.08
USP47-203ENST00000399455 FANCEQ9HB96 536 aa8.29□□□□□ -1.08
USP47-203ENST00000399455 C6orf203Q9P0P8 240 aaPredicted RBP8.29□□□□□ -1.08
USP47-203ENST00000399455 KIF17Q9P2E2 1029 aa8.29□□□□□ -1.08
USP47-203ENST00000399455 SNCAIPQ9Y6H5 919 aa8.29□□□□□ -1.08
USP47-203ENST00000399455 GLUD1P00367 558 aa8.29□□□□□ -1.08
USP47-203ENST00000399455 STMN1P16949 149 aa8.29□□□□□ -1.08
USP47-203ENST00000399455 MZF1P28698 734 aaPredicted RBP8.29□□□□□ -1.08
USP47-203ENST00000399455 CAPZA2P47755 286 aa8.29□□□□□ -1.08
USP47-203ENST00000399455 C2orf54Q08AI8 447 aa8.29□□□□□ -1.08
USP47-203ENST00000399455 RCN2Q14257 317 aa8.29□□□□□ -1.08
USP47-203ENST00000399455 MIB1Q86YT6 1006 aa8.29□□□□□ -1.08
USP47-203ENST00000399455 SLC25A41Q8N5S1 370 aa8.29□□□□□ -1.08
USP47-203ENST00000399455 ATP11CQ8NB49 1132 aa8.29□□□□□ -1.08
USP47-203ENST00000399455 TFB1MQ8WVM0 346 aaKnown RBP8.29□□□□□ -1.08
USP47-203ENST00000399455 PDGFCQ9NRA1 345 aa8.29□□□□□ -1.08
USP47-203ENST00000399455 AAR2Q9Y312 384 aaKnown RBP8.29□□□□□ -1.08
USP47-203ENST00000399455 CXCL14O95715 111 aa8.29□□□□□ -1.08
USP47-203ENST00000399455 PYGBP11216 843 aa8.29□□□□□ -1.08
USP47-203ENST00000399455 ACO1P21399 889 aaKnown RBP8.29□□□□□ -1.08
USP47-203ENST00000399455 MED21Q13503 144 aa8.29□□□□□ -1.08
USP47-203ENST00000399455 ATAT1Q5SQI0 421 aa8.29□□□□□ -1.08
USP47-203ENST00000399455 RETSATQ6NUM9 610 aa8.29□□□□□ -1.08
USP47-203ENST00000399455 SPIRE2Q8WWL2 714 aa8.29□□□□□ -1.08
USP47-203ENST00000399455 CPA5Q8WXQ8 436 aa8.29□□□□□ -1.08
USP47-203ENST00000399455 KRCC1Q9NPI7 259 aaPredicted RBP8.29□□□□□ -1.08
USP47-203ENST00000399455 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP8.29□□□□□ -1.08
USP47-203ENST00000399455 ZNF541Q9H0D2 1346 aa8.29□□□□□ -1.08
USP47-203ENST00000399455 UBXN8O00124 270 aa8.29□□□□□ -1.08
USP47-203ENST00000399455 CFLARO15519 480 aa8.29□□□□□ -1.08
USP47-203ENST00000399455 CTIFO43310 598 aaKnown RBP8.29□□□□□ -1.08
USP47-203ENST00000399455 LARGE1O95461 756 aa8.29□□□□□ -1.08
USP47-203ENST00000399455 FGFR2P21802 821 aa8.29□□□□□ -1.08
USP47-203ENST00000399455 CDC25CP30307 473 aa8.29□□□□□ -1.08
USP47-203ENST00000399455 C16orf72Q14CZ0 275 aa8.29□□□□□ -1.08
USP47-203ENST00000399455 TEAD4Q15561 434 aa8.29□□□□□ -1.08
USP47-203ENST00000399455 KIAA1324Q6UXG2 1013 aaKnown RBP8.29□□□□□ -1.08
USP47-203ENST00000399455 RNF135Q8IUD6 432 aa8.29□□□□□ -1.08
USP47-203ENST00000399455 DDIASQ8IXT1 998 aa8.29□□□□□ -1.08
USP47-203ENST00000399455 CLMNQ96JQ2 1002 aa8.29□□□□□ -1.08
USP47-203ENST00000399455 SH2D3AQ9BRG2 576 aa8.29□□□□□ -1.08
USP47-203ENST00000399455 AP1M1Q9BXS5 423 aa8.29□□□□□ -1.08
USP47-203ENST00000399455 DMAP1Q9NPF5 467 aaPredicted RBP8.29□□□□□ -1.08
USP47-203ENST00000399455 GPN3Q9UHW5 284 aaPredicted RBP8.29□□□□□ -1.08
USP47-203ENST00000399455 UNCXA6NJT0 531 aa8.29□□□□□ -1.08
USP47-203ENST00000399455 BMP10O95393 424 aa8.29□□□□□ -1.08
USP47-203ENST00000399455 RFX5P48382 616 aaPredicted RBP8.29□□□□□ -1.08
USP47-203ENST00000399455 TBX4P57082 545 aa8.29□□□□□ -1.08
USP47-203ENST00000399455 POLR2LP62875 67 aaKnown RBP8.29□□□□□ -1.08
USP47-203ENST00000399455 INAVAQ3KP66 663 aa8.29□□□□□ -1.08
USP47-203ENST00000399455 ZNF697Q5TEC3 545 aa8.29□□□□□ -1.08
USP47-203ENST00000399455 KHDRBS2Q5VWX1 349 aaKnown RBP8.29□□□□□ -1.08
USP47-203ENST00000399455 PNMA5Q96PV4 448 aa8.29□□□□□ -1.08
USP47-203ENST00000399455 XRN2Q9H0D6 950 aaKnown RBP eCLIP8.29□□□□□ -1.08
USP47-203ENST00000399455 DNPEPQ9ULA0 475 aa8.29□□□□□ -1.08
USP47-203ENST00000399455 TPX2Q9ULW0 747 aaKnown RBP8.29□□□□□ -1.08
USP47-203ENST00000399455 CRTAMO95727 393 aa8.29□□□□□ -1.08
USP47-203ENST00000399455 PGK1P00558 417 aa8.29□□□□□ -1.08
USP47-203ENST00000399455 MSH3P20585 1137 aa8.29□□□□□ -1.08
USP47-203ENST00000399455 THOP1P52888 689 aa8.29□□□□□ -1.08
USP47-203ENST00000399455 ILF2Q12905 390 aaKnown RBP8.29□□□□□ -1.08
USP47-203ENST00000399455 PALB2Q86YC2 1186 aa8.29□□□□□ -1.08
USP47-203ENST00000399455 TRIM59Q8IWR1 403 aa8.29□□□□□ -1.08
USP47-203ENST00000399455 DHX40Q8IX18 779 aaKnown RBP8.29□□□□□ -1.08
USP47-203ENST00000399455 CXorf40AQ8TE69 158 aa8.29□□□□□ -1.08
USP47-203ENST00000399455 PPWD1Q96BP3 646 aaKnown RBP8.29□□□□□ -1.08
USP47-203ENST00000399455 SERPINB11Q96P15 392 aa8.29□□□□□ -1.08
USP47-203ENST00000399455 EIF4ENIF1Q9NRA8 985 aaKnown RBP8.29□□□□□ -1.08
USP47-203ENST00000399455 CDC23Q9UJX2 597 aa8.29□□□□□ -1.08
USP47-203ENST00000399455 FDFT1P37268 417 aa8.28□□□□□ -1.08
USP47-203ENST00000399455 APOBEC3HQ6NTF7 200 aaKnown RBP8.28□□□□□ -1.08
USP47-203ENST00000399455 NLGN2Q8NFZ4 835 aa8.28□□□□□ -1.08
USP47-203ENST00000399455 IL17RAQ96F46 866 aa8.28□□□□□ -1.08
USP47-203ENST00000399455 ZFP42Q96MM3 310 aa8.28□□□□□ -1.08
USP47-203ENST00000399455 FRMD8P1Q9BZ68 369 aaPredicted RBP8.28□□□□□ -1.08
USP47-203ENST00000399455 SUPT3HB4E1H0 165 aa8.28□□□□□ -1.08
USP47-203ENST00000399455 INHAP05111 366 aa8.28□□□□□ -1.08
USP47-203ENST00000399455 ITGALP20701 1170 aa8.28□□□□□ -1.08
USP47-203ENST00000399455 GFPT1Q06210 699 aaPredicted RBP8.28□□□□□ -1.08
USP47-203ENST00000399455 PLPP4Q5VZY2 271 aa8.28□□□□□ -1.08
USP47-203ENST00000399455 EFL1Q7Z2Z2 1120 aaKnown RBP8.28□□□□□ -1.08
USP47-203ENST00000399455 ZC3H18Q86VM9 953 aaKnown RBP8.28□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 57.1 ms