RNA–Protein interactions for RNA: ENST00000399429.7

COL28A1-201, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL28A1, Length 4,277 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-201ENST00000399429 ZNF398Q8TD17 642 aa9.71□□□□□ -0.85
COL28A1-201ENST00000399429 WRNIP1Q96S55 665 aa9.71□□□□□ -0.85
COL28A1-201ENST00000399429 MMTAG2Q9BU76 263 aaKnown RBP9.71□□□□□ -0.85
COL28A1-201ENST00000399429 AMNQ9BXJ7 453 aa9.71□□□□□ -0.85
COL28A1-201ENST00000399429 PPM1HQ9ULR3 514 aa9.71□□□□□ -0.85
COL28A1-201ENST00000399429 ASB3Q9Y575 518 aa9.71□□□□□ -0.85
COL28A1-201ENST00000399429 SPDYE16A6NNV3 312 aaPredicted RBP9.71□□□□□ -0.85
COL28A1-201ENST00000399429 GM2AP17900 193 aa9.71□□□□□ -0.85
COL28A1-201ENST00000399429 SERPINB1P30740 379 aa9.71□□□□□ -0.85
COL28A1-201ENST00000399429 RFC4P35249 363 aa9.71□□□□□ -0.85
COL28A1-201ENST00000399429 LIG4P49917 911 aa9.71□□□□□ -0.85
COL28A1-201ENST00000399429 LSAMPQ13449 338 aa9.71□□□□□ -0.85
COL28A1-201ENST00000399429 CCNG2Q16589 344 aa9.71□□□□□ -0.85
COL28A1-201ENST00000399429 SMTNL2Q2TAL5 461 aa9.71□□□□□ -0.85
COL28A1-201ENST00000399429 GPATCH4Q5T3I0 446 aaKnown RBP9.71□□□□□ -0.85
COL28A1-201ENST00000399429 UBAP2Q5T6F2 1119 aaKnown RBP9.71□□□□□ -0.85
COL28A1-201ENST00000399429 AMIGO2Q86SJ2 522 aa9.71□□□□□ -0.85
COL28A1-201ENST00000399429 CCNYL1Q8N7R7 359 aa9.71□□□□□ -0.85
COL28A1-201ENST00000399429 MCUQ8NE86 351 aa9.71□□□□□ -0.85
COL28A1-201ENST00000399429 ETNPPLQ8TBG4 499 aa9.71□□□□□ -0.85
COL28A1-201ENST00000399429 C10orf82Q8WW14 230 aa9.71□□□□□ -0.85
COL28A1-201ENST00000399429 SDCCAG3Q96C92 435 aa9.71□□□□□ -0.85
COL28A1-201ENST00000399429 EIF2AK1Q9BQI3 630 aaKnown RBP9.71□□□□□ -0.85
COL28A1-201ENST00000399429 S100A14Q9HCY8 104 aa9.71□□□□□ -0.85
COL28A1-201ENST00000399429 RAB6BQ9NRW1 208 aa9.71□□□□□ -0.85
COL28A1-201ENST00000399429 HECW2Q9P2P5 1572 aa9.71□□□□□ -0.85
COL28A1-201ENST00000399429 NEURL4Q96JN8 1562 aa9.71□□□□□ -0.86
COL28A1-201ENST00000399429 GOLGA8QA0A0J9YX86 632 aa9.71□□□□□ -0.86
COL28A1-201ENST00000399429 GOLGA8OA6NCC3 632 aa9.71□□□□□ -0.86
COL28A1-201ENST00000399429 GOLGA8NF8WBI6 632 aa9.71□□□□□ -0.86
COL28A1-201ENST00000399429 DCXO43602 365 aa9.71□□□□□ -0.86
COL28A1-201ENST00000399429 STMN1P16949 149 aa9.71□□□□□ -0.86
COL28A1-201ENST00000399429 POLR2BP30876 1174 aaKnown RBP9.71□□□□□ -0.86
COL28A1-201ENST00000399429 PTGIRP43119 386 aa9.71□□□□□ -0.86
COL28A1-201ENST00000399429 PSMC6P62333 389 aa9.71□□□□□ -0.86
COL28A1-201ENST00000399429 TRAF2Q12933 501 aa9.71□□□□□ -0.86
COL28A1-201ENST00000399429 PTK6Q13882 451 aa9.71□□□□□ -0.86
COL28A1-201ENST00000399429 MAPK11Q15759 364 aa9.71□□□□□ -0.86
COL28A1-201ENST00000399429 WDR72Q3MJ13 1102 aa9.71□□□□□ -0.86
COL28A1-201ENST00000399429 SLFN13Q68D06 897 aa9.71□□□□□ -0.86
COL28A1-201ENST00000399429 KRT39Q6A163 491 aa9.71□□□□□ -0.86
COL28A1-201ENST00000399429 LAYNQ6UX15 382 aa9.71□□□□□ -0.86
COL28A1-201ENST00000399429 PALB2Q86YC2 1186 aa9.71□□□□□ -0.86
COL28A1-201ENST00000399429 DAGLBQ8NCG7 672 aa9.71□□□□□ -0.86
COL28A1-201ENST00000399429 ZSCAN18Q8TBC5 510 aaPredicted RBP9.71□□□□□ -0.86
COL28A1-201ENST00000399429 UTP4Q969X6 686 aaKnown RBP9.71□□□□□ -0.86
COL28A1-201ENST00000399429 SRPK1Q96SB4 655 aaKnown RBP9.71□□□□□ -0.86
COL28A1-201ENST00000399429 ZNF577Q9BSK1 485 aa9.71□□□□□ -0.86
COL28A1-201ENST00000399429 BEGAINQ9BUH8 593 aa9.71□□□□□ -0.86
COL28A1-201ENST00000399429 GIMAP4Q9NUV9 329 aa9.71□□□□□ -0.86
COL28A1-201ENST00000399429 ATAD3AQ9NVI7 634 aa9.71□□□□□ -0.86
COL28A1-201ENST00000399429 BARX2Q9UMQ3 279 aaPredicted RBP9.71□□□□□ -0.86
COL28A1-201ENST00000399429 CRCPO75575 148 aa9.7□□□□□ -0.86
COL28A1-201ENST00000399429 TM7SF2O76062 418 aa9.7□□□□□ -0.86
COL28A1-201ENST00000399429 MYCLP12524 364 aaPredicted RBP9.7□□□□□ -0.86
COL28A1-201ENST00000399429 CCDC130P13994 396 aa9.7□□□□□ -0.86
COL28A1-201ENST00000399429 FGFR3P22607 806 aa9.7□□□□□ -0.86
COL28A1-201ENST00000399429 DLG1Q12959 904 aa9.7□□□□□ -0.86
COL28A1-201ENST00000399429 CDO1Q16878 200 aa9.7□□□□□ -0.86
COL28A1-201ENST00000399429 NADK2Q4G0N4 442 aa9.7□□□□□ -0.86
COL28A1-201ENST00000399429 SH3D19Q5HYK7 790 aa9.7□□□□□ -0.86
COL28A1-201ENST00000399429 MFSD14BQ5SR56 506 aa9.7□□□□□ -0.86
COL28A1-201ENST00000399429 PERM1Q5SV97 790 aa9.7□□□□□ -0.86
COL28A1-201ENST00000399429 C12orf60Q5U649 245 aa9.7□□□□□ -0.86
COL28A1-201ENST00000399429 KLHDC10Q6PID8 442 aa9.7□□□□□ -0.86
COL28A1-201ENST00000399429 ADGRF4Q8IZF3 695 aa9.7□□□□□ -0.86
COL28A1-201ENST00000399429 FAM71DQ8N9W8 422 aa9.7□□□□□ -0.86
COL28A1-201ENST00000399429 DIS3LQ8TF46 1054 aaKnown RBP9.7□□□□□ -0.86
COL28A1-201ENST00000399429 SLC7A6OSQ96CW6 309 aaPredicted RBP9.7□□□□□ -0.86
COL28A1-201ENST00000399429 MECRQ9BV79 373 aa9.7□□□□□ -0.86
COL28A1-201ENST00000399429 TUBA8Q9NY65 449 aaPredicted RBP9.7□□□□□ -0.86
COL28A1-201ENST00000399429 IL6STP40189 918 aaPredicted RBP9.7□□□□□ -0.86
COL28A1-201ENST00000399429 CCNG1P51959 295 aa9.7□□□□□ -0.86
COL28A1-201ENST00000399429 SLC12A2P55011 1212 aa9.7□□□□□ -0.86
COL28A1-201ENST00000399429 PKNOX1P55347 436 aa9.7□□□□□ -0.86
COL28A1-201ENST00000399429 EIF3EP60228 445 aaKnown RBP9.7□□□□□ -0.86
COL28A1-201ENST00000399429 MGAT5Q09328 741 aa9.7□□□□□ -0.86
COL28A1-201ENST00000399429 FAAP100Q0VG06 881 aa9.7□□□□□ -0.86
COL28A1-201ENST00000399429 TRIM28Q13263 835 aaKnown RBP9.7□□□□□ -0.86
COL28A1-201ENST00000399429 GIT2Q14161 759 aa9.7□□□□□ -0.86
COL28A1-201ENST00000399429 MORF4L2Q15014 288 aa9.7□□□□□ -0.86
COL28A1-201ENST00000399429 NEDD8Q15843 81 aa9.7□□□□□ -0.86
COL28A1-201ENST00000399429 CBWD6Q4V339 395 aa9.7□□□□□ -0.86
COL28A1-201ENST00000399429 CBWD3Q5JTY5 395 aa9.7□□□□□ -0.86
COL28A1-201ENST00000399429 CBWD5Q5RIA9 395 aa9.7□□□□□ -0.86
COL28A1-201ENST00000399429 C16orf89Q6UX73 402 aa9.7□□□□□ -0.86
COL28A1-201ENST00000399429 PPIL6Q8IXY8 311 aa9.7□□□□□ -0.86
COL28A1-201ENST00000399429 RCOR2Q8IZ40 523 aa9.7□□□□□ -0.86
COL28A1-201ENST00000399429 CAPSLQ8WWF8 208 aa9.7□□□□□ -0.86
COL28A1-201ENST00000399429 NSUN4Q96CB9 384 aaKnown RBP9.7□□□□□ -0.86
COL28A1-201ENST00000399429 PI4K2AQ9BTU6 479 aa9.7□□□□□ -0.86
COL28A1-201ENST00000399429 MRPS26Q9BYN8 205 aaKnown RBP9.7□□□□□ -0.86
COL28A1-201ENST00000399429 LIN28AQ9H9Z2 209 aaKnown RBP9.7□□□□□ -0.86
COL28A1-201ENST00000399429 PARVBQ9HBI1 364 aa9.7□□□□□ -0.86
COL28A1-201ENST00000399429 DNPEPQ9ULA0 475 aa9.7□□□□□ -0.86
COL28A1-201ENST00000399429 COG5Q9UP83 839 aa9.7□□□□□ -0.86
COL28A1-201ENST00000399429 MYRFQ9Y2G1 1151 aa9.7□□□□□ -0.86
COL28A1-201ENST00000399429 F8W8V4 182 aa9.7□□□□□ -0.86
COL28A1-201ENST00000399429 AP3B1O00203 1094 aa9.7□□□□□ -0.86
COL28A1-201ENST00000399429 GNPATO15228 680 aa9.7□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 57.5 ms