RNA–Protein interactions for RNA: ENST00000397545.8

CCDC40-204, Transcript of coiled-coil domain containing 40, humanhuman

APPRIS P3 TSL 5 BASIC

Gene CCDC40, Length 4,294 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-204ENST00000397545 MYL2P10916 166 aa11.23□□□□□ -0.61
CCDC40-204ENST00000397545 IREB2P48200 963 aaKnown RBP11.23□□□□□ -0.61
CCDC40-204ENST00000397545 CUL2Q13617 745 aa11.23□□□□□ -0.61
CCDC40-204ENST00000397545 PPIL6Q8IXY8 311 aa11.23□□□□□ -0.61
CCDC40-204ENST00000397545 ACTL9Q8TC94 416 aa11.23□□□□□ -0.61
CCDC40-204ENST00000397545 EME1Q96AY2 570 aa11.23□□□□□ -0.61
CCDC40-204ENST00000397545 NRBF2Q96F24 287 aa11.23□□□□□ -0.61
CCDC40-204ENST00000397545 HAUS8Q9BT25 410 aa11.23□□□□□ -0.61
CCDC40-204ENST00000397545 FOXP3Q9BZS1 431 aa11.23□□□□□ -0.61
CCDC40-204ENST00000397545 TASP1Q9H6P5 420 aa11.23□□□□□ -0.61
CCDC40-204ENST00000397545 TAS2R14Q9NYV8 317 aa11.23□□□□□ -0.61
CCDC40-204ENST00000397545 RIPK2O43353 540 aa11.23□□□□□ -0.61
CCDC40-204ENST00000397545 TPST1O60507 370 aa11.23□□□□□ -0.61
CCDC40-204ENST00000397545 ENTPD3O75355 529 aa11.23□□□□□ -0.61
CCDC40-204ENST00000397545 TTLL4Q14679 1199 aa11.23□□□□□ -0.61
CCDC40-204ENST00000397545 DNAL1Q4LDG9 190 aa11.23□□□□□ -0.61
CCDC40-204ENST00000397545 CBWD6Q4V339 395 aa11.23□□□□□ -0.61
CCDC40-204ENST00000397545 CBWD3Q5JTY5 395 aa11.23□□□□□ -0.61
CCDC40-204ENST00000397545 MIIPQ5JXC2 388 aa11.23□□□□□ -0.61
CCDC40-204ENST00000397545 CBWD5Q5RIA9 395 aa11.23□□□□□ -0.61
CCDC40-204ENST00000397545 KIAA1841Q6NSI8 718 aa11.23□□□□□ -0.61
CCDC40-204ENST00000397545 ARHGEF19Q8IW93 802 aa11.23□□□□□ -0.61
CCDC40-204ENST00000397545 TEKT4Q8WW24 435 aa11.23□□□□□ -0.61
CCDC40-204ENST00000397545 SEPT1Q8WYJ6 367 aa11.23□□□□□ -0.61
CCDC40-204ENST00000397545 SH3GL3Q99963 347 aa11.23□□□□□ -0.61
CCDC40-204ENST00000397545 WDR35Q9P2L0 1181 aa11.23□□□□□ -0.61
CCDC40-204ENST00000397545 CTNNAL1Q9UBT7 734 aa11.23□□□□□ -0.61
CCDC40-204ENST00000397545 IGSF9BQ9UPX0 1349 aa11.22□□□□□ -0.61
CCDC40-204ENST00000397545 NFIBO00712 420 aa11.22□□□□□ -0.61
CCDC40-204ENST00000397545 HNRNPCP07910 306 aaKnown RBP eCLIP11.22□□□□□ -0.61
CCDC40-204ENST00000397545 GZMAP12544 262 aa11.22□□□□□ -0.61
CCDC40-204ENST00000397545 BMPR2Q13873 1038 aa11.22□□□□□ -0.61
CCDC40-204ENST00000397545 ECM1Q16610 540 aa11.22□□□□□ -0.61
CCDC40-204ENST00000397545 TKFCQ3LXA3 575 aa11.22□□□□□ -0.61
CCDC40-204ENST00000397545 NUP93Q8N1F7 819 aa11.22□□□□□ -0.61
CCDC40-204ENST00000397545 ZNF669Q96BR6 464 aaPredicted RBP11.22□□□□□ -0.61
CCDC40-204ENST00000397545 MTMR12Q9C0I1 747 aa11.22□□□□□ -0.61
CCDC40-204ENST00000397545 C20orf96Q9NUD7 363 aaPredicted RBP11.22□□□□□ -0.61
CCDC40-204ENST00000397545 WDR70Q9NW82 654 aa11.22□□□□□ -0.61
CCDC40-204ENST00000397545 EXTL3O43909 919 aa11.22□□□□□ -0.61
CCDC40-204ENST00000397545 SHBGP04278 402 aa11.22□□□□□ -0.61
CCDC40-204ENST00000397545 AMHR2Q16671 573 aa11.22□□□□□ -0.61
CCDC40-204ENST00000397545 PCNX4Q63HM2 1172 aa11.22□□□□□ -0.61
CCDC40-204ENST00000397545 C16orf87Q6PH81 154 aa11.22□□□□□ -0.61
CCDC40-204ENST00000397545 FUKQ8N0W3 1084 aa11.22□□□□□ -0.61
CCDC40-204ENST00000397545 PRCCQ92733 491 aaPredicted RBP11.22□□□□□ -0.61
CCDC40-204ENST00000397545 IRAK4Q9NWZ3 460 aa11.22□□□□□ -0.61
CCDC40-204ENST00000397545 PAK5Q9P286 719 aa11.22□□□□□ -0.61
CCDC40-204ENST00000397545 ATP6V1G2O95670 118 aa11.22□□□□□ -0.61
CCDC40-204ENST00000397545 SSTR1P30872 391 aa11.22□□□□□ -0.61
CCDC40-204ENST00000397545 AP3M2P53677 418 aa11.22□□□□□ -0.61
CCDC40-204ENST00000397545 ITIH4Q14624 930 aa11.22□□□□□ -0.61
CCDC40-204ENST00000397545 OLFM3Q96PB7 478 aa11.22□□□□□ -0.61
CCDC40-204ENST00000397545 MTMR9Q96QG7 549 aa11.22□□□□□ -0.61
CCDC40-204ENST00000397545 TIPINQ9BVW5 301 aa11.22□□□□□ -0.61
CCDC40-204ENST00000397545 DNAJC18Q9H819 358 aa11.22□□□□□ -0.61
CCDC40-204ENST00000397545 RSAD1Q9HA92 442 aa11.22□□□□□ -0.61
CCDC40-204ENST00000397545 KIF9Q9HAQ2 790 aa11.22□□□□□ -0.61
CCDC40-204ENST00000397545 IL1RL2Q9HB29 575 aa11.22□□□□□ -0.61
CCDC40-204ENST00000397545 GDF3Q9NR23 364 aa11.22□□□□□ -0.61
CCDC40-204ENST00000397545 LZTS1Q9Y250 596 aa11.22□□□□□ -0.61
CCDC40-204ENST00000397545 HNRNPCL1O60812 293 aaKnown RBP11.21□□□□□ -0.61
CCDC40-204ENST00000397545 MYL3P08590 195 aa11.21□□□□□ -0.61
CCDC40-204ENST00000397545 VHLP40337 213 aa11.21□□□□□ -0.61
CCDC40-204ENST00000397545 TPI1P60174 286 aa11.21□□□□□ -0.61
CCDC40-204ENST00000397545 MRPS35P82673 323 aaKnown RBP11.21□□□□□ -0.61
CCDC40-204ENST00000397545 AMPD2Q01433 879 aa11.21□□□□□ -0.61
CCDC40-204ENST00000397545 DCAF6Q58WW2 860 aa11.21□□□□□ -0.61
CCDC40-204ENST00000397545 GRAMD4Q6IC98 578 aa11.21□□□□□ -0.61
CCDC40-204ENST00000397545 BTNL9Q6UXG8 535 aa11.21□□□□□ -0.61
CCDC40-204ENST00000397545 FAM151AQ8WW52 585 aa11.21□□□□□ -0.61
CCDC40-204ENST00000397545 GCOM2Q9BZD3 368 aaPredicted RBP11.21□□□□□ -0.61
CCDC40-204ENST00000397545 C10orf88Q9H8K7 445 aa11.21□□□□□ -0.61
CCDC40-204ENST00000397545 CHST7Q9NS84 486 aa11.21□□□□□ -0.61
CCDC40-204ENST00000397545 HACD3Q9P035 362 aa11.21□□□□□ -0.61
CCDC40-204ENST00000397545 ARHGAP10A1A4S6 786 aa11.21□□□□□ -0.61
CCDC40-204ENST00000397545 GOLGA8CPA6NN73 597 aa11.21□□□□□ -0.61
CCDC40-204ENST00000397545 XPO1O14980 1071 aaKnown RBP11.21□□□□□ -0.61
CCDC40-204ENST00000397545 PJA2O43164 708 aa11.21□□□□□ -0.61
CCDC40-204ENST00000397545 ONECUT3O60422 494 aaPredicted RBP11.21□□□□□ -0.61
CCDC40-204ENST00000397545 CBX6O95503 412 aa11.21□□□□□ -0.61
CCDC40-204ENST00000397545 ZFXP17010 805 aaPredicted RBP11.21□□□□□ -0.61
CCDC40-204ENST00000397545 SERPINB3P29508 390 aa11.21□□□□□ -0.61
CCDC40-204ENST00000397545 CAPRIN1Q14444 709 aaKnown RBP11.21□□□□□ -0.61
CCDC40-204ENST00000397545 SLC25A41Q8N5S1 370 aa11.21□□□□□ -0.61
CCDC40-204ENST00000397545 PAFAH2Q99487 392 aa11.21□□□□□ -0.61
CCDC40-204ENST00000397545 KDM4CQ9H3R0 1056 aa11.21□□□□□ -0.61
CCDC40-204ENST00000397545 SYCE1LA8MT33 242 aa11.21□□□□□ -0.62
CCDC40-204ENST00000397545 PPP1R12AO14974 1030 aaPredicted RBP11.21□□□□□ -0.62
CCDC40-204ENST00000397545 TRAPPC3O43617 180 aa11.21□□□□□ -0.62
CCDC40-204ENST00000397545 XPAP23025 273 aaPredicted RBP11.21□□□□□ -0.62
CCDC40-204ENST00000397545 SULT1E1P49888 294 aa11.21□□□□□ -0.62
CCDC40-204ENST00000397545 RBP5P82980 135 aa11.21□□□□□ -0.62
CCDC40-204ENST00000397545 TMEM132DQ14C87 1099 aa11.21□□□□□ -0.62
CCDC40-204ENST00000397545 LRRC55Q6ZSA7 311 aa11.21□□□□□ -0.62
CCDC40-204ENST00000397545 RIBC1Q8N443 379 aaPredicted RBP11.21□□□□□ -0.62
CCDC40-204ENST00000397545 NAF1Q96HR8 494 aaKnown RBP11.21□□□□□ -0.62
CCDC40-204ENST00000397545 MAGEB18Q96M61 343 aa11.21□□□□□ -0.62
CCDC40-204ENST00000397545 WHRNQ9P202 907 aa11.21□□□□□ -0.62
CCDC40-204ENST00000397545 FAM8A1Q9UBU6 413 aa11.21□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms