RNA–Protein interactions for RNA: ENST00000395454.6

SCAF11-204, Transcript of SR-related CTD associated factor 11, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SCAF11, Length 1,931 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-204ENST00000395454 CYFIP2Q96F07 1278 aa16.02■□□□□ 0.15
SCAF11-204ENST00000395454 DPP3Q9NY33 737 aa16.02■□□□□ 0.15
SCAF11-204ENST00000395454 CHD9Q3L8U1 2897 aa16.01■□□□□ 0.15
SCAF11-204ENST00000395454 GRXCR1A8MXD5 290 aa16.01■□□□□ 0.15
SCAF11-204ENST00000395454 DDHD2O94830 711 aa16.01■□□□□ 0.15
SCAF11-204ENST00000395454 ITGB3P05106 788 aa16.01■□□□□ 0.15
SCAF11-204ENST00000395454 COMTP21964 271 aa16.01■□□□□ 0.15
SCAF11-204ENST00000395454 BMP8BP34820 402 aa16.01■□□□□ 0.15
SCAF11-204ENST00000395454 RABGGTBP53611 331 aa16.01■□□□□ 0.15
SCAF11-204ENST00000395454 TUSC3Q13454 348 aa16.01■□□□□ 0.15
SCAF11-204ENST00000395454 NAA35Q5VZE5 725 aa16.01■□□□□ 0.15
SCAF11-204ENST00000395454 HDXQ7Z353 690 aa16.01■□□□□ 0.15
SCAF11-204ENST00000395454 TDHQ8IZJ6 230 aa16.01■□□□□ 0.15
SCAF11-204ENST00000395454 KRT222Q8N1A0 295 aa16.01■□□□□ 0.15
SCAF11-204ENST00000395454 EIF1ADQ8N9N8 165 aaKnown RBP16.01■□□□□ 0.15
SCAF11-204ENST00000395454 AENQ8WTP8 325 aaKnown RBP16.01■□□□□ 0.15
SCAF11-204ENST00000395454 RAD9AQ99638 391 aa16.01■□□□□ 0.15
SCAF11-204ENST00000395454 ZNF518BQ9C0D4 1074 aa16.01■□□□□ 0.15
SCAF11-204ENST00000395454 GDF3Q9NR23 364 aa16.01■□□□□ 0.15
SCAF11-204ENST00000395454 ITGA11Q9UKX5 1188 aa16.01■□□□□ 0.15
SCAF11-204ENST00000395454 COL4A6Q14031 1691 aa16■□□□□ 0.15
SCAF11-204ENST00000395454 CCDC66A2RUB6 948 aa16■□□□□ 0.15
SCAF11-204ENST00000395454 CLSTN1O94985 981 aa16■□□□□ 0.15
SCAF11-204ENST00000395454 CFHP08603 1231 aa16■□□□□ 0.15
SCAF11-204ENST00000395454 MMP8P22894 467 aa16■□□□□ 0.15
SCAF11-204ENST00000395454 HTRA4P83105 476 aaPredicted RBP16■□□□□ 0.15
SCAF11-204ENST00000395454 SPOUT1Q5T280 376 aaKnown RBP16■□□□□ 0.15
SCAF11-204ENST00000395454 PLEKHA7Q6IQ23 1121 aa16■□□□□ 0.15
SCAF11-204ENST00000395454 CMTR2Q8IYT2 770 aaKnown RBP16■□□□□ 0.15
SCAF11-204ENST00000395454 UBL4BQ8N7F7 174 aa16■□□□□ 0.15
SCAF11-204ENST00000395454 NAP1L3Q99457 506 aaPredicted RBP16■□□□□ 0.15
SCAF11-204ENST00000395454 PAAF1Q9BRP4 392 aa16■□□□□ 0.15
SCAF11-204ENST00000395454 CYP3A43Q9HB55 503 aa16■□□□□ 0.15
SCAF11-204ENST00000395454 DNAJB4Q9UDY4 337 aa16■□□□□ 0.15
SCAF11-204ENST00000395454 SZT2Q5T011 3432 aa16■□□□□ 0.15
SCAF11-204ENST00000395454 THAP12O43422 761 aa16■□□□□ 0.15
SCAF11-204ENST00000395454 B4GALT3O60512 393 aa16■□□□□ 0.15
SCAF11-204ENST00000395454 PAEPP09466 180 aa16■□□□□ 0.15
SCAF11-204ENST00000395454 CYP3A5P20815 502 aa16■□□□□ 0.15
SCAF11-204ENST00000395454 RRM1P23921 792 aa16■□□□□ 0.15
SCAF11-204ENST00000395454 PLA2G4AP47712 749 aa16■□□□□ 0.15
SCAF11-204ENST00000395454 CLCNKBP51801 687 aa16■□□□□ 0.15
SCAF11-204ENST00000395454 ZNF667Q5HYK9 610 aa16■□□□□ 0.15
SCAF11-204ENST00000395454 CPA5Q8WXQ8 436 aa16■□□□□ 0.15
SCAF11-204ENST00000395454 SLITRK6Q9H5Y7 841 aa16■□□□□ 0.15
SCAF11-204ENST00000395454 NRDE2Q9H7Z3 1164 aa16■□□□□ 0.15
SCAF11-204ENST00000395454 VIPAS39Q9H9C1 493 aa16■□□□□ 0.15
SCAF11-204ENST00000395454 PCDHA3Q9Y5H8 950 aa16■□□□□ 0.15
SCAF11-204ENST00000395454 MYBL2P10244 700 aa15.99■□□□□ 0.15
SCAF11-204ENST00000395454 POLR2BP30876 1174 aaKnown RBP15.99■□□□□ 0.15
SCAF11-204ENST00000395454 PBX3P40426 434 aa15.99■□□□□ 0.15
SCAF11-204ENST00000395454 SLC1A1P43005 524 aa15.99■□□□□ 0.15
SCAF11-204ENST00000395454 OR1G1P47890 313 aa15.99■□□□□ 0.15
SCAF11-204ENST00000395454 DSC1Q08554 894 aa15.99■□□□□ 0.15
SCAF11-204ENST00000395454 PPP2R5EQ16537 467 aa15.99■□□□□ 0.15
SCAF11-204ENST00000395454 PTPROQ16827 1216 aa15.99■□□□□ 0.15
SCAF11-204ENST00000395454 COLGALT2Q8IYK4 626 aa15.99■□□□□ 0.15
SCAF11-204ENST00000395454 KRT35Q92764 455 aa15.99■□□□□ 0.15
SCAF11-204ENST00000395454 TCRBV5S1A1TA0A578 114 aa15.98■□□□□ 0.15
SCAF11-204ENST00000395454 LCHNA4D1U4 455 aa15.98■□□□□ 0.15
SCAF11-204ENST00000395454 PODXLO00592 558 aa15.98■□□□□ 0.15
SCAF11-204ENST00000395454 MYOGP15173 224 aa15.98■□□□□ 0.15
SCAF11-204ENST00000395454 INCA1Q0VD86 236 aa15.98■□□□□ 0.15
SCAF11-204ENST00000395454 MESDQ14696 234 aa15.98■□□□□ 0.15
SCAF11-204ENST00000395454 FIBCD1Q8N539 461 aa15.98■□□□□ 0.15
SCAF11-204ENST00000395454 TTC39CQ8N584 583 aa15.98■□□□□ 0.15
SCAF11-204ENST00000395454 KRT12Q99456 494 aa15.98■□□□□ 0.15
SCAF11-204ENST00000395454 LHX5Q9H2C1 402 aa15.98■□□□□ 0.15
SCAF11-204ENST00000395454 ADAM22Q9P0K1 906 aa15.98■□□□□ 0.15
SCAF11-204ENST00000395454 CHORDC1Q9UHD1 332 aaPredicted RBP15.98■□□□□ 0.15
SCAF11-204ENST00000395454 AGAP1Q9UPQ3 857 aa15.98■□□□□ 0.15
SCAF11-204ENST00000395454 PRG3Q9Y2Y8 225 aaPredicted RBP15.98■□□□□ 0.15
SCAF11-204ENST00000395454 GTF3C5Q9Y5Q8 519 aaPredicted RBP15.98■□□□□ 0.15
SCAF11-204ENST00000395454 MRPL42Q9Y6G3 142 aaKnown RBP15.98■□□□□ 0.15
SCAF11-204ENST00000395454 SCINQ9Y6U3 715 aa15.98■□□□□ 0.15
SCAF11-204ENST00000395454 SCN1AP35498 2009 aa15.98■□□□□ 0.15
SCAF11-204ENST00000395454 GBF1Q92538 1859 aa15.98■□□□□ 0.15
SCAF11-204ENST00000395454 FGGP02679 453 aa15.98■□□□□ 0.15
SCAF11-204ENST00000395454 WEE2P0C1S8 567 aa15.98■□□□□ 0.15
SCAF11-204ENST00000395454 LRPAP1P30533 357 aa15.98■□□□□ 0.15
SCAF11-204ENST00000395454 MAN1A1P33908 653 aa15.98■□□□□ 0.15
SCAF11-204ENST00000395454 MARCKSL1P49006 195 aa15.98■□□□□ 0.15
SCAF11-204ENST00000395454 ALDH7A1P49419 539 aaKnown RBP15.98■□□□□ 0.15
SCAF11-204ENST00000395454 RBP5P82980 135 aa15.98■□□□□ 0.15
SCAF11-204ENST00000395454 MAMLD1Q13495 774 aa15.98■□□□□ 0.15
SCAF11-204ENST00000395454 CASP8Q14790 479 aa15.98■□□□□ 0.15
SCAF11-204ENST00000395454 UPP1Q16831 310 aa15.98■□□□□ 0.15
SCAF11-204ENST00000395454 LIN9Q5TKA1 542 aa15.98■□□□□ 0.15
SCAF11-204ENST00000395454 C9orf57Q5W0N0 161 aa15.98■□□□□ 0.15
SCAF11-204ENST00000395454 HASPINQ8TF76 798 aa15.98■□□□□ 0.15
SCAF11-204ENST00000395454 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP15.98■□□□□ 0.153e-6■■■■■ 50.8
SCAF11-204ENST00000395454 TFAP2BQ92481 460 aa15.98■□□□□ 0.15
SCAF11-204ENST00000395454 SEC14L1Q92503 715 aa15.98■□□□□ 0.15
SCAF11-204ENST00000395454 SDCBP2Q9H190 292 aa15.98■□□□□ 0.15
SCAF11-204ENST00000395454 CWH43Q9H720 699 aa15.98■□□□□ 0.15
SCAF11-204ENST00000395454 MRPL47Q9HD33 250 aaKnown RBP15.98■□□□□ 0.15
SCAF11-204ENST00000395454 LCMT1Q9UIC8 334 aa15.98■□□□□ 0.15
SCAF11-204ENST00000395454 POLIQ9UNA4 740 aa15.98■□□□□ 0.15
SCAF11-204ENST00000395454 HSFX4A0A1B0GTS1 333 aaPredicted RBP15.97■□□□□ 0.15
SCAF11-204ENST00000395454 HSFX3A0A1B0GWH4 333 aaPredicted RBP15.97■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms