RNA–Protein interactions for RNA: ENST00000393310.5

LIMS1-203, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMS1, Length 4,392 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-203ENST00000393310 KCTD5Q9NXV2 234 aa8.56□□□□□ -1.04
LIMS1-203ENST00000393310 WDR35Q9P2L0 1181 aa8.56□□□□□ -1.04
LIMS1-203ENST00000393310 SERPINI2O75830 405 aa8.55□□□□□ -1.04
LIMS1-203ENST00000393310 YEATS4O95619 227 aa8.55□□□□□ -1.04
LIMS1-203ENST00000393310 KRT75O95678 551 aa8.55□□□□□ -1.04
LIMS1-203ENST00000393310 OXTRP30559 389 aa8.55□□□□□ -1.04
LIMS1-203ENST00000393310 TXKP42681 527 aa8.55□□□□□ -1.04
LIMS1-203ENST00000393310 ZNF200P98182 395 aaPredicted RBP8.55□□□□□ -1.04
LIMS1-203ENST00000393310 RSPO4Q2I0M5 234 aaPredicted RBP8.55□□□□□ -1.04
LIMS1-203ENST00000393310 KANK3Q6NY19 840 aa8.55□□□□□ -1.04
LIMS1-203ENST00000393310 MAEAQ7L5Y9 396 aa8.55□□□□□ -1.04
LIMS1-203ENST00000393310 ELOA2Q8IYF1 753 aaPredicted RBP8.55□□□□□ -1.04
LIMS1-203ENST00000393310 TRAF3IP1Q8TDR0 691 aaPredicted RBP8.55□□□□□ -1.04
LIMS1-203ENST00000393310 SNX29Q8TEQ0 813 aa8.55□□□□□ -1.04
LIMS1-203ENST00000393310 C2orf15Q8WU43 125 aaKnown RBP8.55□□□□□ -1.04
LIMS1-203ENST00000393310 SUSD6Q92537 303 aa8.55□□□□□ -1.04
LIMS1-203ENST00000393310 IGSF21Q96ID5 467 aa8.55□□□□□ -1.04
LIMS1-203ENST00000393310 RGS18Q9NS28 235 aa8.55□□□□□ -1.04
LIMS1-203ENST00000393310 VPS41P49754 854 aa8.55□□□□□ -1.04
LIMS1-203ENST00000393310 ZNF132P52740 706 aa8.55□□□□□ -1.04
LIMS1-203ENST00000393310 RBL2Q08999 1139 aa8.55□□□□□ -1.04
LIMS1-203ENST00000393310 IFRD2Q12894 506 aaPredicted RBP8.55□□□□□ -1.04
LIMS1-203ENST00000393310 TAF11Q15544 211 aa8.55□□□□□ -1.04
LIMS1-203ENST00000393310 LSMEM2Q8N112 164 aa8.55□□□□□ -1.04
LIMS1-203ENST00000393310 CACTIN-AS1Q8N1I8 211 aa8.55□□□□□ -1.04
LIMS1-203ENST00000393310 DHX58Q96C10 678 aa8.55□□□□□ -1.04
LIMS1-203ENST00000393310 STRADBQ9C0K7 418 aa8.55□□□□□ -1.04
LIMS1-203ENST00000393310 MRPL42Q9Y6G3 142 aaKnown RBP8.55□□□□□ -1.04
LIMS1-203ENST00000393310 VTNP04004 478 aa8.55□□□□□ -1.04
LIMS1-203ENST00000393310 ATP5BP06576 529 aaKnown RBP8.55□□□□□ -1.04
LIMS1-203ENST00000393310 MYOGP15173 224 aa8.55□□□□□ -1.04
LIMS1-203ENST00000393310 ST13P50502 369 aaKnown RBP8.55□□□□□ -1.04
LIMS1-203ENST00000393310 EMC2Q15006 297 aa8.55□□□□□ -1.04
LIMS1-203ENST00000393310 RASIP1Q5U651 963 aa8.55□□□□□ -1.04
LIMS1-203ENST00000393310 SPECC1LQ69YQ0 1117 aa8.55□□□□□ -1.04
LIMS1-203ENST00000393310 BPIFB1Q8TDL5 484 aa8.55□□□□□ -1.04
LIMS1-203ENST00000393310 ATP2A3Q93084 1043 aa8.55□□□□□ -1.04
LIMS1-203ENST00000393310 INPP4AQ96PE3 977 aaPredicted RBP8.55□□□□□ -1.04
LIMS1-203ENST00000393310 SPAG5Q96R06 1193 aa8.55□□□□□ -1.04
LIMS1-203ENST00000393310 EDEM2Q9BV94 578 aa8.55□□□□□ -1.04
LIMS1-203ENST00000393310 POLR3FQ9H1D9 316 aaPredicted RBP8.55□□□□□ -1.04
LIMS1-203ENST00000393310 RHBDL2Q9NX52 303 aa8.55□□□□□ -1.04
LIMS1-203ENST00000393310 PIAS3Q9Y6X2 628 aa8.55□□□□□ -1.04
LIMS1-203ENST00000393310 F8W8V4 182 aa8.54□□□□□ -1.04
LIMS1-203ENST00000393310 ZNF16P17020 682 aaPredicted RBP8.54□□□□□ -1.04
LIMS1-203ENST00000393310 PPP3CCP48454 512 aa8.54□□□□□ -1.04
LIMS1-203ENST00000393310 GPR158Q5T848 1215 aa8.54□□□□□ -1.04
LIMS1-203ENST00000393310 LIN28BQ6ZN17 250 aaKnown RBP eCLIP8.54□□□□□ -1.046e-12■■■■■ 38.1
LIMS1-203ENST00000393310 CCDC105Q8IYK2 499 aa8.54□□□□□ -1.04
LIMS1-203ENST00000393310 SPEM1Q8N4L4 309 aa8.54□□□□□ -1.04
LIMS1-203ENST00000393310 MYCT1Q8N699 235 aa8.54□□□□□ -1.04
LIMS1-203ENST00000393310 ZFPM2Q8WW38 1151 aa8.54□□□□□ -1.04
LIMS1-203ENST00000393310 IFT81Q8WYA0 676 aa8.54□□□□□ -1.04
LIMS1-203ENST00000393310 CAPN10Q9HC96 672 aa8.54□□□□□ -1.04
LIMS1-203ENST00000393310 MRPL40Q9NQ50 206 aaKnown RBP8.54□□□□□ -1.04
LIMS1-203ENST00000393310 PLCB1Q9NQ66 1216 aa8.54□□□□□ -1.04
LIMS1-203ENST00000393310 CPSF3Q9UKF6 684 aaKnown RBP8.54□□□□□ -1.04
LIMS1-203ENST00000393310 FNDC3AQ9Y2H6 1198 aaKnown RBP8.54□□□□□ -1.04
LIMS1-203ENST00000393310 LRRC72A6NJI9 287 aa8.54□□□□□ -1.04
LIMS1-203ENST00000393310 SHISA7A6NL88 538 aa8.54□□□□□ -1.04
LIMS1-203ENST00000393310 IKBKBO14920 756 aa8.54□□□□□ -1.04
LIMS1-203ENST00000393310 MYL1P05976 194 aa8.54□□□□□ -1.04
LIMS1-203ENST00000393310 GEMIN4P57678 1058 aaKnown RBP8.54□□□□□ -1.04
LIMS1-203ENST00000393310 CFAP157Q5JU67 520 aa8.54□□□□□ -1.04
LIMS1-203ENST00000393310 TAPT1Q6NXT6 567 aa8.54□□□□□ -1.04
LIMS1-203ENST00000393310 LRRC49Q8IUZ0 686 aa8.54□□□□□ -1.04
LIMS1-203ENST00000393310 SLC43A3Q8NBI5 491 aa8.54□□□□□ -1.04
LIMS1-203ENST00000393310 SLC7A14Q8TBB6 771 aa8.54□□□□□ -1.04
LIMS1-203ENST00000393310 SPPL2BQ8TCT7 592 aa8.54□□□□□ -1.04
LIMS1-203ENST00000393310 ALS2CR12Q96Q35 445 aa8.54□□□□□ -1.04
LIMS1-203ENST00000393310 DEC1Q9P2X7 70 aa8.54□□□□□ -1.04
LIMS1-203ENST00000393310 ZNF510Q9Y2H8 683 aa8.54□□□□□ -1.04
LIMS1-203ENST00000393310 SBF1O95248 1867 aa8.54□□□□□ -1.04
LIMS1-203ENST00000393310 COL5A3P25940 1745 aaPredicted RBP8.54□□□□□ -1.04
LIMS1-203ENST00000393310 A0A0U1RQF3 1178 aa8.54□□□□□ -1.04
LIMS1-203ENST00000393310 CCDC160A6NGH7 325 aa8.54□□□□□ -1.04
LIMS1-203ENST00000393310 CCL16O15467 120 aa8.54□□□□□ -1.04
LIMS1-203ENST00000393310 SLU7O95391 586 aaKnown RBP8.54□□□□□ -1.04
LIMS1-203ENST00000393310 NTRK1P04629 796 aa8.54□□□□□ -1.04
LIMS1-203ENST00000393310 PDHA1P08559 390 aa8.54□□□□□ -1.04
LIMS1-203ENST00000393310 MBL2P11226 248 aaPredicted RBP8.54□□□□□ -1.04
LIMS1-203ENST00000393310 CYP11B2P19099 503 aa8.54□□□□□ -1.04
LIMS1-203ENST00000393310 OR1D2P34982 312 aa8.54□□□□□ -1.04
LIMS1-203ENST00000393310 ZNF174Q15697 407 aa8.54□□□□□ -1.04
LIMS1-203ENST00000393310 LRRC71Q8N4P6 559 aa8.54□□□□□ -1.04
LIMS1-203ENST00000393310 KIAA1143Q96AT1 154 aaPredicted RBP8.54□□□□□ -1.04
LIMS1-203ENST00000393310 PLEKHG4BQ96PX9 1271 aa8.54□□□□□ -1.04
LIMS1-203ENST00000393310 UQCC2Q9BRT2 126 aa8.54□□□□□ -1.04
LIMS1-203ENST00000393310 VPS18Q9P253 973 aa8.54□□□□□ -1.04
LIMS1-203ENST00000393310 MCM8Q9UJA3 840 aa8.54□□□□□ -1.04
LIMS1-203ENST00000393310 PCDHB8Q9UN66 801 aa8.54□□□□□ -1.04
LIMS1-203ENST00000393310 RIPK3Q9Y572 518 aa8.54□□□□□ -1.04
LIMS1-203ENST00000393310 MYADML2A6NDP7 307 aa8.54□□□□□ -1.04
LIMS1-203ENST00000393310 NEMP2A6NFY4 417 aa8.54□□□□□ -1.04
LIMS1-203ENST00000393310 CYTH3O43739 400 aa8.54□□□□□ -1.04
LIMS1-203ENST00000393310 PTGS2P35354 604 aa8.54□□□□□ -1.04
LIMS1-203ENST00000393310 ARL4DP49703 201 aa8.54□□□□□ -1.04
LIMS1-203ENST00000393310 TAF6P49848 677 aa8.54□□□□□ -1.04
LIMS1-203ENST00000393310 LYSMD4Q5XG99 296 aa8.54□□□□□ -1.04
LIMS1-203ENST00000393310 ACMSDQ8TDX5 336 aa8.54□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms