RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 GEMP55040 296 aa13.29□□□□□ -0.28
CCDC88C-204ENST00000389857 PRKCEQ02156 737 aa13.29□□□□□ -0.28
CCDC88C-204ENST00000389857 TMEM132BQ14DG7 1078 aa13.29□□□□□ -0.28
CCDC88C-204ENST00000389857 C12orf60Q5U649 245 aa13.29□□□□□ -0.28
CCDC88C-204ENST00000389857 ERP27Q96DN0 273 aa13.29□□□□□ -0.28
CCDC88C-204ENST00000389857 CAMKK2Q96RR4 588 aa13.29□□□□□ -0.28
CCDC88C-204ENST00000389857 B2RBV5 119 aa13.29□□□□□ -0.28
CCDC88C-204ENST00000389857 COPAP53621 1224 aa13.29□□□□□ -0.28
CCDC88C-204ENST00000389857 CCDC144BQ3MJ40 725 aa13.29□□□□□ -0.28
CCDC88C-204ENST00000389857 XPO6Q96QU8 1125 aaKnown RBP13.29□□□□□ -0.28
CCDC88C-204ENST00000389857 PRRG3Q9BZD7 231 aa13.29□□□□□ -0.28
CCDC88C-204ENST00000389857 GRAP2O75791 330 aa13.29□□□□□ -0.28
CCDC88C-204ENST00000389857 ATXN3P54252 364 aaPredicted RBP13.29□□□□□ -0.28
CCDC88C-204ENST00000389857 DPYDQ12882 1025 aa13.29□□□□□ -0.28
CCDC88C-204ENST00000389857 PKN2Q16513 984 aaKnown RBP13.29□□□□□ -0.28
CCDC88C-204ENST00000389857 EDRF1Q3B7T1 1238 aa13.29□□□□□ -0.28
CCDC88C-204ENST00000389857 TIGD7Q6NT04 549 aaPredicted RBP13.29□□□□□ -0.28
CCDC88C-204ENST00000389857 C11orf74Q86VG3 221 aa13.29□□□□□ -0.28
CCDC88C-204ENST00000389857 HOMEZQ8IX15 550 aa13.29□□□□□ -0.28
CCDC88C-204ENST00000389857 HPDLQ96IR7 371 aa13.29□□□□□ -0.28
CCDC88C-204ENST00000389857 CDC42BPBQ9Y5S2 1711 aa13.29□□□□□ -0.28
CCDC88C-204ENST00000389857 CAMK2GQ13555 558 aaPredicted RBP13.29□□□□□ -0.28
CCDC88C-204ENST00000389857 GJC2Q5T442 439 aaPredicted RBP13.29□□□□□ -0.28
CCDC88C-204ENST00000389857 GPAT2Q6NUI2 795 aa13.29□□□□□ -0.28
CCDC88C-204ENST00000389857 RINLQ6ZS11 566 aa13.29□□□□□ -0.28
CCDC88C-204ENST00000389857 LRRC8DQ7L1W4 858 aa13.29□□□□□ -0.28
CCDC88C-204ENST00000389857 AAR2Q9Y312 384 aaKnown RBP13.29□□□□□ -0.28
CCDC88C-204ENST00000389857 HBP1O60381 514 aa13.28□□□□□ -0.28
CCDC88C-204ENST00000389857 DGKIO75912 1065 aa13.28□□□□□ -0.28
CCDC88C-204ENST00000389857 HLA-DRAP01903 254 aa13.28□□□□□ -0.28
CCDC88C-204ENST00000389857 MYBP10242 640 aa13.28□□□□□ -0.28
CCDC88C-204ENST00000389857 CYP2C8P10632 490 aa13.28□□□□□ -0.28
CCDC88C-204ENST00000389857 TMED10P49755 219 aaKnown RBP13.28□□□□□ -0.28
CCDC88C-204ENST00000389857 ITGA8P53708 1063 aa13.28□□□□□ -0.28
CCDC88C-204ENST00000389857 ZNF543Q08ER8 600 aa13.28□□□□□ -0.28
CCDC88C-204ENST00000389857 NCF4Q15080 339 aa13.28□□□□□ -0.28
CCDC88C-204ENST00000389857 STRIP1Q5VSL9 837 aa13.28□□□□□ -0.28
CCDC88C-204ENST00000389857 JADE3Q92613 823 aa13.28□□□□□ -0.28
CCDC88C-204ENST00000389857 TMCC3Q9ULS5 477 aa13.28□□□□□ -0.28
CCDC88C-204ENST00000389857 E2F8A0AVK6 867 aa13.28□□□□□ -0.28
CCDC88C-204ENST00000389857 USP27XA6NNY8 438 aa13.28□□□□□ -0.28
CCDC88C-204ENST00000389857 CDC16Q13042 620 aa13.28□□□□□ -0.28
CCDC88C-204ENST00000389857 CYP51A1Q16850 503 aa13.28□□□□□ -0.28
CCDC88C-204ENST00000389857 OLFML2BQ68BL8 750 aa13.28□□□□□ -0.28
CCDC88C-204ENST00000389857 MRNIPQ6NTE8 343 aa13.28□□□□□ -0.28
CCDC88C-204ENST00000389857 ZNF333Q96JL9 665 aa13.28□□□□□ -0.28
CCDC88C-204ENST00000389857 PHF20Q9BVI0 1012 aa13.28□□□□□ -0.28
CCDC88C-204ENST00000389857 EMILIN2Q9BXX0 1053 aa13.28□□□□□ -0.28
CCDC88C-204ENST00000389857 NIF3L1Q9GZT8 377 aa13.28□□□□□ -0.28
CCDC88C-204ENST00000389857 ILKAPQ9H0C8 392 aaPredicted RBP13.28□□□□□ -0.28
CCDC88C-204ENST00000389857 WDCPQ9H6R7 721 aa13.28□□□□□ -0.28
CCDC88C-204ENST00000389857 FAM49BQ9NUQ9 324 aa13.28□□□□□ -0.28
CCDC88C-204ENST00000389857 SOX13Q9UN79 622 aa13.28□□□□□ -0.28
CCDC88C-204ENST00000389857 SAMD9LQ8IVG5 1584 aa13.28□□□□□ -0.28
CCDC88C-204ENST00000389857 RHOBTB3O94955 611 aa13.28□□□□□ -0.28
CCDC88C-204ENST00000389857 DSG1Q02413 1049 aa13.28□□□□□ -0.28
CCDC88C-204ENST00000389857 BTKQ06187 659 aa13.28□□□□□ -0.28
CCDC88C-204ENST00000389857 BAATQ14032 418 aaPredicted RBP13.28□□□□□ -0.28
CCDC88C-204ENST00000389857 THUMPD3Q9BV44 507 aaKnown RBP13.28□□□□□ -0.28
CCDC88C-204ENST00000389857 MTMR4Q9NYA4 1195 aa13.28□□□□□ -0.28
CCDC88C-204ENST00000389857 CTNNAL1Q9UBT7 734 aa13.28□□□□□ -0.28
CCDC88C-204ENST00000389857 ADCY10Q96PN6 1610 aa13.28□□□□□ -0.28
CCDC88C-204ENST00000389857 PRDM15P57071 1507 aaPredicted RBP13.28□□□□□ -0.28
CCDC88C-204ENST00000389857 PSTPIP1O43586 416 aa13.28□□□□□ -0.28
CCDC88C-204ENST00000389857 RPS6P62753 249 aaKnown RBP13.28□□□□□ -0.28
CCDC88C-204ENST00000389857 UCMAQ8WVF2 138 aa13.28□□□□□ -0.28
CCDC88C-204ENST00000389857 SYBUQ9NX95 663 aa13.28□□□□□ -0.28
CCDC88C-204ENST00000389857 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP13.28□□□□□ -0.28
CCDC88C-204ENST00000389857 AP4S1Q9Y587 144 aa13.28□□□□□ -0.28
CCDC88C-204ENST00000389857 STX7O15400 261 aaKnown RBP13.28□□□□□ -0.28
CCDC88C-204ENST00000389857 STRNO43815 780 aa13.28□□□□□ -0.28
CCDC88C-204ENST00000389857 EGFRP00533 1210 aa13.28□□□□□ -0.28
CCDC88C-204ENST00000389857 GRK3P35626 688 aa13.28□□□□□ -0.28
CCDC88C-204ENST00000389857 SOX11P35716 441 aa13.28□□□□□ -0.28
CCDC88C-204ENST00000389857 SERPINB8P50452 374 aa13.28□□□□□ -0.28
CCDC88C-204ENST00000389857 VSNL1P62760 191 aa13.28□□□□□ -0.28
CCDC88C-204ENST00000389857 TMEM62Q0P6H9 643 aa13.28□□□□□ -0.28
CCDC88C-204ENST00000389857 JAMLQ86YT9 394 aa13.28□□□□□ -0.28
CCDC88C-204ENST00000389857 COLEC11Q9BWP8 271 aa13.28□□□□□ -0.28
CCDC88C-204ENST00000389857 CAPN10Q9HC96 672 aa13.28□□□□□ -0.28
CCDC88C-204ENST00000389857 ZNRF3Q9ULT6 936 aa13.28□□□□□ -0.28
CCDC88C-204ENST00000389857 TET3O43151 1660 aa13.28□□□□□ -0.28
CCDC88C-204ENST00000389857 QRICH2Q9H0J4 1663 aa13.28□□□□□ -0.28
CCDC88C-204ENST00000389857 TMEM120BA0PK00 339 aa13.28□□□□□ -0.28
CCDC88C-204ENST00000389857 GAS2O43903 313 aaKnown RBP13.28□□□□□ -0.28
CCDC88C-204ENST00000389857 XRRA1Q6P2D8 792 aa13.28□□□□□ -0.28
CCDC88C-204ENST00000389857 UTP6Q9NYH9 597 aaKnown RBP13.28□□□□□ -0.28
CCDC88C-204ENST00000389857 V9GYQ6 96 aa13.28□□□□□ -0.28
CCDC88C-204ENST00000389857 XPO1O14980 1071 aaKnown RBP13.27□□□□□ -0.28
CCDC88C-204ENST00000389857 RNASEH1O60930 286 aaKnown RBP13.27□□□□□ -0.28
CCDC88C-204ENST00000389857 GTF2H1P32780 548 aa13.27□□□□□ -0.28
CCDC88C-204ENST00000389857 TAF6P49848 677 aa13.27□□□□□ -0.28
CCDC88C-204ENST00000389857 CSE1LP55060 971 aaKnown RBP13.27□□□□□ -0.28
CCDC88C-204ENST00000389857 OTOAQ7RTW8 1153 aa13.27□□□□□ -0.28
CCDC88C-204ENST00000389857 TSC22D4Q9Y3Q8 395 aa13.27□□□□□ -0.28
CCDC88C-204ENST00000389857 NPTXRO95502 500 aa13.27□□□□□ -0.28
CCDC88C-204ENST00000389857 DLGAP3O95886 979 aa13.27□□□□□ -0.28
CCDC88C-204ENST00000389857 IGKV5-2P06315 115 aa13.27□□□□□ -0.28
CCDC88C-204ENST00000389857 TMEM253P0C7T8 217 aa13.27□□□□□ -0.28
CCDC88C-204ENST00000389857 ZNF157P51786 506 aaPredicted RBP13.27□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms