RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 C3orf58Q8NDZ4 430 aa10.85□□□□□ -0.67
VPS53-202ENST00000389040 LMO3Q8TAP4 145 aa10.85□□□□□ -0.67
VPS53-202ENST00000389040 PLEKHO2Q8TD55 490 aa10.85□□□□□ -0.67
VPS53-202ENST00000389040 MICAL1Q8TDZ2 1067 aa10.85□□□□□ -0.67
VPS53-202ENST00000389040 HPDLQ96IR7 371 aa10.85□□□□□ -0.67
VPS53-202ENST00000389040 CDX2Q99626 313 aaPredicted RBP10.85□□□□□ -0.67
VPS53-202ENST00000389040 PRDM12Q9H4Q4 367 aa10.85□□□□□ -0.67
VPS53-202ENST00000389040 NSUN3Q9H649 340 aaKnown RBP10.85□□□□□ -0.67
VPS53-202ENST00000389040 RXFP1Q9HBX9 757 aa10.85□□□□□ -0.67
VPS53-202ENST00000389040 ENTPD7Q9NQZ7 604 aa10.85□□□□□ -0.67
VPS53-202ENST00000389040 TARSL2A2RTX5 802 aaKnown RBP10.84□□□□□ -0.67
VPS53-202ENST00000389040 EPOPA6NHQ4 379 aa10.84□□□□□ -0.67
VPS53-202ENST00000389040 DDX3XO00571 662 aaKnown RBP eCLIP10.84□□□□□ -0.67
VPS53-202ENST00000389040 CXCL14O95715 111 aa10.84□□□□□ -0.67
VPS53-202ENST00000389040 KRT19P08727 400 aa10.84□□□□□ -0.67
VPS53-202ENST00000389040 MCM3P25205 808 aa10.84□□□□□ -0.67
VPS53-202ENST00000389040 GCLMP48507 274 aa10.84□□□□□ -0.67
VPS53-202ENST00000389040 MXI1P50539 228 aa10.84□□□□□ -0.67
VPS53-202ENST00000389040 SMARCB1Q12824 385 aa10.84□□□□□ -0.67
VPS53-202ENST00000389040 BIRC3Q13489 604 aa10.84□□□□□ -0.67
VPS53-202ENST00000389040 MRPL58Q14197 206 aaKnown RBP10.84□□□□□ -0.67
VPS53-202ENST00000389040 BEND6Q5SZJ8 279 aaPredicted RBP10.84□□□□□ -0.67
VPS53-202ENST00000389040 TDRD10Q5VZ19 366 aaKnown RBP10.84□□□□□ -0.67
VPS53-202ENST00000389040 PHLDB3Q6NSJ2 640 aa10.84□□□□□ -0.67
VPS53-202ENST00000389040 ELMSAN1Q6PJG2 1045 aa10.84□□□□□ -0.67
VPS53-202ENST00000389040 DSTYKQ6XUX3 929 aa10.84□□□□□ -0.67
VPS53-202ENST00000389040 METTL23Q86XA0 190 aa10.84□□□□□ -0.67
VPS53-202ENST00000389040 FBXL13Q8NEE6 735 aa10.84□□□□□ -0.67
VPS53-202ENST00000389040 BCL7CQ8WUZ0 217 aaPredicted RBP10.84□□□□□ -0.67
VPS53-202ENST00000389040 FAM81BQ96LP2 452 aa10.84□□□□□ -0.67
VPS53-202ENST00000389040 PSMB7Q99436 277 aa10.84□□□□□ -0.67
VPS53-202ENST00000389040 FUT8Q9BYC5 575 aa10.84□□□□□ -0.67
VPS53-202ENST00000389040 DNAI2Q9GZS0 605 aa10.84□□□□□ -0.67
VPS53-202ENST00000389040 INTUQ9ULD6 942 aa10.84□□□□□ -0.67
VPS53-202ENST00000389040 MTCH2Q9Y6C9 303 aa10.84□□□□□ -0.67
VPS53-202ENST00000389040 PTPRJQ12913 1337 aa10.84□□□□□ -0.67
VPS53-202ENST00000389040 RALGAPA2Q2PPJ7 1873 aa10.84□□□□□ -0.67
VPS53-202ENST00000389040 MYH10P35580 1976 aa10.84□□□□□ -0.67
VPS53-202ENST00000389040 GRID2IPA4D2P6 1211 aa10.84□□□□□ -0.67
VPS53-202ENST00000389040 HUS1O60921 280 aa10.84□□□□□ -0.67
VPS53-202ENST00000389040 CST3P01034 146 aaPredicted RBP10.84□□□□□ -0.67
VPS53-202ENST00000389040 CXCR5P32302 372 aa10.84□□□□□ -0.67
VPS53-202ENST00000389040 PLA2G4AP47712 749 aa10.84□□□□□ -0.67
VPS53-202ENST00000389040 LHX1P48742 406 aa10.84□□□□□ -0.67
VPS53-202ENST00000389040 C2orf54Q08AI8 447 aa10.84□□□□□ -0.67
VPS53-202ENST00000389040 IFI16Q16666 785 aaKnown RBP10.84□□□□□ -0.67
VPS53-202ENST00000389040 WDR44Q5JSH3 913 aa10.84□□□□□ -0.67
VPS53-202ENST00000389040 MEI1Q5TIA1 1274 aa10.84□□□□□ -0.67
VPS53-202ENST00000389040 CCDC181Q5TID7 509 aa10.84□□□□□ -0.67
VPS53-202ENST00000389040 LIMS2Q7Z4I7 341 aa10.84□□□□□ -0.67
VPS53-202ENST00000389040 SPRED2Q7Z698 418 aa10.84□□□□□ -0.67
VPS53-202ENST00000389040 SLC30A5Q8TAD4 765 aa10.84□□□□□ -0.67
VPS53-202ENST00000389040 OLIG1Q8TAK6 271 aa10.84□□□□□ -0.67
VPS53-202ENST00000389040 LNX1Q8TBB1 728 aaPredicted RBP10.84□□□□□ -0.67
VPS53-202ENST00000389040 GDPD5Q8WTR4 605 aa10.84□□□□□ -0.67
VPS53-202ENST00000389040 SENP8Q96LD8 212 aa10.84□□□□□ -0.67
VPS53-202ENST00000389040 VN1R3Q9BXE9 311 aa10.84□□□□□ -0.67
VPS53-202ENST00000389040 XYLT2Q9H1B5 865 aa10.84□□□□□ -0.67
VPS53-202ENST00000389040 ABCB6Q9NP58 842 aa10.84□□□□□ -0.67
VPS53-202ENST00000389040 RAB20Q9NX57 234 aa10.84□□□□□ -0.67
VPS53-202ENST00000389040 C2orf71A6NGG8 1288 aa10.83□□□□□ -0.68
VPS53-202ENST00000389040 OR6C75A6NL08 312 aa10.83□□□□□ -0.68
VPS53-202ENST00000389040 CYB561D2O14569 222 aa10.83□□□□□ -0.68
VPS53-202ENST00000389040 FTCDO95954 541 aa10.83□□□□□ -0.68
VPS53-202ENST00000389040 ASS1P00966 412 aaKnown RBP10.83□□□□□ -0.68
VPS53-202ENST00000389040 ADH1AP07327 375 aa10.83□□□□□ -0.68
VPS53-202ENST00000389040 H2AFZP0C0S5 128 aa10.83□□□□□ -0.68
VPS53-202ENST00000389040 DNAJB1P25685 340 aa10.83□□□□□ -0.68
VPS53-202ENST00000389040 ERVFC1P60507 584 aa10.83□□□□□ -0.68
VPS53-202ENST00000389040 YWHAHQ04917 246 aaPredicted RBP10.83□□□□□ -0.68
VPS53-202ENST00000389040 ARHGAP44Q17R89 818 aa10.83□□□□□ -0.68
VPS53-202ENST00000389040 H2AFVQ71UI9 128 aa10.83□□□□□ -0.68
VPS53-202ENST00000389040 THEM5Q8N1Q8 247 aa10.83□□□□□ -0.68
VPS53-202ENST00000389040 MMGT1Q8N4V1 131 aa10.83□□□□□ -0.68
VPS53-202ENST00000389040 SPATA4Q8NEY3 305 aa10.83□□□□□ -0.68
VPS53-202ENST00000389040 HDAC7Q8WUI4 952 aa10.83□□□□□ -0.68
VPS53-202ENST00000389040 GUCD1Q96NT3 240 aa10.83□□□□□ -0.68
VPS53-202ENST00000389040 SYT11Q9BT88 431 aa10.83□□□□□ -0.68
VPS53-202ENST00000389040 MTRRQ9UBK8 725 aa10.83□□□□□ -0.68
VPS53-202ENST00000389040 RNF14Q9UBS8 474 aa10.83□□□□□ -0.68
VPS53-202ENST00000389040 CHD7Q9P2D1 2997 aa10.83□□□□□ -0.68
VPS53-202ENST00000389040 A0A0A6YYK5 440 aaPredicted RBP10.82□□□□□ -0.68
VPS53-202ENST00000389040 TULP1O00294 542 aaPredicted RBP10.82□□□□□ -0.68
VPS53-202ENST00000389040 SPTLC1O15269 473 aa10.82□□□□□ -0.68
VPS53-202ENST00000389040 LRRN2O75325 713 aa10.82□□□□□ -0.68
VPS53-202ENST00000389040 SRGAP2BP0DMP2 458 aa10.82□□□□□ -0.68
VPS53-202ENST00000389040 FOSL2P15408 326 aa10.82□□□□□ -0.68
VPS53-202ENST00000389040 PAFAH1B1P43034 410 aa10.82□□□□□ -0.68
VPS53-202ENST00000389040 NOP2P46087 812 aaKnown RBP10.82□□□□□ -0.68
VPS53-202ENST00000389040 NDUFV1P49821 464 aa10.82□□□□□ -0.68
VPS53-202ENST00000389040 GUCY2FP51841 1108 aa10.82□□□□□ -0.68
VPS53-202ENST00000389040 TNNC1P63316 161 aa10.82□□□□□ -0.68
VPS53-202ENST00000389040 ZNF699Q32M78 642 aa10.82□□□□□ -0.68
VPS53-202ENST00000389040 WDR72Q3MJ13 1102 aa10.82□□□□□ -0.68
VPS53-202ENST00000389040 CFAP221Q4G0U5 840 aa10.82□□□□□ -0.68
VPS53-202ENST00000389040 ZNF667Q5HYK9 610 aa10.82□□□□□ -0.68
VPS53-202ENST00000389040 LMBRD2Q68DH5 695 aaPredicted RBP10.82□□□□□ -0.68
VPS53-202ENST00000389040 SLC8B1Q6J4K2 584 aa10.82□□□□□ -0.68
VPS53-202ENST00000389040 ZNF280DQ6N043 979 aa10.82□□□□□ -0.68
VPS53-202ENST00000389040 CCDC70Q6NSX1 233 aa10.82□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms