RNA–Protein interactions for RNA: ENST00000380871.4

NKX3-1-201, Transcript of NK3 homeobox 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene NKX3-1, Length 3,271 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1-201ENST00000380871 MRPL47Q9HD33 250 aaKnown RBP17.1■□□□□ 0.33
NKX3-1-201ENST00000380871 TXLNGQ9NUQ3 528 aa17.1■□□□□ 0.33
NKX3-1-201ENST00000380871 DCTN4Q9UJW0 460 aa17.1■□□□□ 0.33
NKX3-1-201ENST00000380871 GINS2Q9Y248 185 aa17.1■□□□□ 0.33
NKX3-1-201ENST00000380871 LRRD1A4D1F6 860 aa17.1■□□□□ 0.33
NKX3-1-201ENST00000380871 ZC3H11AO75152 810 aaKnown RBP eCLIP17.1■□□□□ 0.33
NKX3-1-201ENST00000380871 ADRA1DP25100 572 aa17.1■□□□□ 0.33
NKX3-1-201ENST00000380871 NAMPTP43490 491 aa17.1■□□□□ 0.33
NKX3-1-201ENST00000380871 MYL6P60660 151 aa17.1■□□□□ 0.33
NKX3-1-201ENST00000380871 CCDC15Q0P6D6 951 aa17.1■□□□□ 0.33
NKX3-1-201ENST00000380871 PSMD6Q15008 389 aa17.1■□□□□ 0.33
NKX3-1-201ENST00000380871 PDK4Q16654 411 aa17.1■□□□□ 0.33
NKX3-1-201ENST00000380871 MAPK6Q16659 721 aa17.1■□□□□ 0.33
NKX3-1-201ENST00000380871 TAF1BQ53T94 588 aaPredicted RBP17.1■□□□□ 0.33
NKX3-1-201ENST00000380871 CYP4A22Q5TCH4 519 aa17.1■□□□□ 0.33
NKX3-1-201ENST00000380871 GRAMD1AQ96CP6 724 aa17.1■□□□□ 0.33
NKX3-1-201ENST00000380871 TBC1D10AQ9BXI6 508 aa17.1■□□□□ 0.33
NKX3-1-201ENST00000380871 IMPG2Q9BZV3 1241 aa17.1■□□□□ 0.33
NKX3-1-201ENST00000380871 USH1CQ9Y6N9 552 aa17.1■□□□□ 0.33
NKX3-1-201ENST00000380871 B4GALT5O43286 388 aa17.09■□□□□ 0.33
NKX3-1-201ENST00000380871 CD19P15391 556 aa17.09■□□□□ 0.33
NKX3-1-201ENST00000380871 BRD2P25440 801 aaKnown RBP17.09■□□□□ 0.33
NKX3-1-201ENST00000380871 SKIV2L2P42285 1042 aaKnown RBP17.09■□□□□ 0.33
NKX3-1-201ENST00000380871 PSEN1P49768 467 aa17.09■□□□□ 0.33
NKX3-1-201ENST00000380871 TFDP1Q14186 410 aa17.09■□□□□ 0.33
NKX3-1-201ENST00000380871 SYCP2LQ5T4T6 812 aa17.09■□□□□ 0.33
NKX3-1-201ENST00000380871 RNASEH2BQ5TBB1 312 aaKnown RBP17.09■□□□□ 0.33
NKX3-1-201ENST00000380871 SPATA33Q96N06 139 aa17.09■□□□□ 0.33
NKX3-1-201ENST00000380871 WDR83Q9BRX9 315 aaKnown RBP17.09■□□□□ 0.33
NKX3-1-201ENST00000380871 CLUHO75153 1309 aa17.09■□□□□ 0.33
NKX3-1-201ENST00000380871 COL11A1P12107 1806 aaPredicted RBP17.09■□□□□ 0.33
NKX3-1-201ENST00000380871 PRPF4O43172 522 aaKnown RBP eCLIP17.09■□□□□ 0.33
NKX3-1-201ENST00000380871 TYROBPO43914 113 aa17.09■□□□□ 0.33
NKX3-1-201ENST00000380871 PEX11AO75192 247 aa17.09■□□□□ 0.33
NKX3-1-201ENST00000380871 ENTPD5O75356 428 aa17.09■□□□□ 0.33
NKX3-1-201ENST00000380871 ITGBL1O95965 494 aaPredicted RBP17.09■□□□□ 0.33
NKX3-1-201ENST00000380871 SPOCD1Q6ZMY3 1216 aa17.09■□□□□ 0.33
NKX3-1-201ENST00000380871 LONP2Q86WA8 852 aa17.09■□□□□ 0.33
NKX3-1-201ENST00000380871 PHF13Q86YI8 300 aaPredicted RBP17.09■□□□□ 0.33
NKX3-1-201ENST00000380871 MICAL1Q8TDZ2 1067 aa17.09■□□□□ 0.33
NKX3-1-201ENST00000380871 UBN1Q9NPG3 1134 aa17.09■□□□□ 0.33
NKX3-1-201ENST00000380871 MAGEB2O15479 319 aa17.09■□□□□ 0.33
NKX3-1-201ENST00000380871 ARL2P36404 184 aa17.09■□□□□ 0.33
NKX3-1-201ENST00000380871 BPIFB4P59827 614 aa17.09■□□□□ 0.33
NKX3-1-201ENST00000380871 KCNT1Q5JUK3 1230 aa17.09■□□□□ 0.33
NKX3-1-201ENST00000380871 FAM160B1Q5W0V3 765 aa17.09■□□□□ 0.33
NKX3-1-201ENST00000380871 ZNF606Q8WXB4 792 aa17.09■□□□□ 0.33
NKX3-1-201ENST00000380871 TRIM6Q9C030 488 aaPredicted RBP17.09■□□□□ 0.33
NKX3-1-201ENST00000380871 PARVAQ9NVD7 372 aa17.09■□□□□ 0.33
NKX3-1-201ENST00000380871 WDR81Q562E7 1941 aa17.09■□□□□ 0.33
NKX3-1-201ENST00000380871 H0YCG3 227 aa17.08■□□□□ 0.33
NKX3-1-201ENST00000380871 TRPC3Q13507 836 aa17.08■□□□□ 0.33
NKX3-1-201ENST00000380871 KCTD2Q14681 263 aa17.08■□□□□ 0.33
NKX3-1-201ENST00000380871 TAF11Q15544 211 aa17.08■□□□□ 0.33
NKX3-1-201ENST00000380871 FNBP1LQ5T0N5 605 aa17.08■□□□□ 0.33
NKX3-1-201ENST00000380871 HHATQ5VTY9 493 aa17.08■□□□□ 0.33
NKX3-1-201ENST00000380871 RIBC1Q8N443 379 aaPredicted RBP17.08■□□□□ 0.33
NKX3-1-201ENST00000380871 DNERQ8NFT8 737 aa17.08■□□□□ 0.33
NKX3-1-201ENST00000380871 SPDL1Q96EA4 605 aa17.08■□□□□ 0.33
NKX3-1-201ENST00000380871 SSC5DA1L4H1 1573 aa17.08■□□□□ 0.33
NKX3-1-201ENST00000380871 TMEM191CA6NGB0 347 aa17.08■□□□□ 0.32
NKX3-1-201ENST00000380871 ATP2A1O14983 1001 aa17.08■□□□□ 0.32
NKX3-1-201ENST00000380871 TMEM191BP0C7N4 346 aa17.08■□□□□ 0.32
NKX3-1-201ENST00000380871 CYP2C8P10632 490 aa17.08■□□□□ 0.32
NKX3-1-201ENST00000380871 CLDN10P78369 228 aa17.08■□□□□ 0.32
NKX3-1-201ENST00000380871 OASLQ15646 514 aaKnown RBP17.08■□□□□ 0.32
NKX3-1-201ENST00000380871 SLFN12LQ6IEE8 588 aa17.08■□□□□ 0.32
NKX3-1-201ENST00000380871 MTDHQ86UE4 582 aaKnown RBP17.08■□□□□ 0.32
NKX3-1-201ENST00000380871 ZNF75CPQ92670 426 aaPredicted RBP17.08■□□□□ 0.32
NKX3-1-201ENST00000380871 TJP2Q9UDY2 1190 aa17.08■□□□□ 0.32
NKX3-1-201ENST00000380871 A0A0B4J269 797 aa17.08■□□□□ 0.32
NKX3-1-201ENST00000380871 TCRBV7S3A2A0A539 114 aa17.08■□□□□ 0.32
NKX3-1-201ENST00000380871 TJP3O95049 919 aa17.08■□□□□ 0.32
NKX3-1-201ENST00000380871 PRKCBP05771 671 aa17.08■□□□□ 0.32
NKX3-1-201ENST00000380871 MYH9P35579 1960 aaKnown RBP17.08■□□□□ 0.32
NKX3-1-201ENST00000380871 RAP1GAPP47736 663 aa17.08■□□□□ 0.32
NKX3-1-201ENST00000380871 LAMTOR4Q0VGL1 99 aa17.08■□□□□ 0.32
NKX3-1-201ENST00000380871 RIOX2Q8IUF8 465 aa17.08■□□□□ 0.32
NKX3-1-201ENST00000380871 RFWD2Q8NHY2 731 aa17.08■□□□□ 0.32
NKX3-1-201ENST00000380871 PRR11Q96HE9 360 aaPredicted RBP17.08■□□□□ 0.32
NKX3-1-201ENST00000380871 RAB3IPQ96QF0 476 aaPredicted RBP17.08■□□□□ 0.32
NKX3-1-201ENST00000380871 SLC17A7Q9P2U7 560 aa17.08■□□□□ 0.32
NKX3-1-201ENST00000380871 SCINQ9Y6U3 715 aa17.08■□□□□ 0.32
NKX3-1-201ENST00000380871 hCG_1818297A0A087WSY0 165 aa17.07■□□□□ 0.32
NKX3-1-201ENST00000380871 ADCY3O60266 1144 aa17.07■□□□□ 0.32
NKX3-1-201ENST00000380871 MMP8P22894 467 aa17.07■□□□□ 0.32
NKX3-1-201ENST00000380871 VCPP55072 806 aaKnown RBP17.07■□□□□ 0.32
NKX3-1-201ENST00000380871 RFWD3Q6PCD5 774 aa17.07■□□□□ 0.32
NKX3-1-201ENST00000380871 RCOR2Q8IZ40 523 aa17.07■□□□□ 0.32
NKX3-1-201ENST00000380871 KANSL3Q9P2N6 904 aa17.07■□□□□ 0.32
NKX3-1-201ENST00000380871 IP6K2Q9UHH9 426 aa17.07■□□□□ 0.32
NKX3-1-201ENST00000380871 C2orf71A6NGG8 1288 aa17.07■□□□□ 0.32
NKX3-1-201ENST00000380871 TXNP10599 105 aaKnown RBP17.07■□□□□ 0.32
NKX3-1-201ENST00000380871 IREB2P48200 963 aaKnown RBP17.07■□□□□ 0.32
NKX3-1-201ENST00000380871 RAD23BP54727 409 aa17.07■□□□□ 0.32
NKX3-1-201ENST00000380871 CCDC142Q17RM4 750 aa17.07■□□□□ 0.32
NKX3-1-201ENST00000380871 EEF1DP3Q658K8 133 aa17.07■□□□□ 0.32
NKX3-1-201ENST00000380871 DCUN1D2Q6PH85 259 aa17.07■□□□□ 0.32
NKX3-1-201ENST00000380871 CCDC125Q86Z20 511 aa17.07■□□□□ 0.32
NKX3-1-201ENST00000380871 PTPRN2Q92932 1015 aa17.07■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 52.7 ms