RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 NME7Q9Y5B8 376 aa14.09□□□□□ -0.15
CCDC3-202ENST00000378839 PIAS1O75925 651 aa14.09□□□□□ -0.15
CCDC3-202ENST00000378839 KIAA0754O94854 1291 aa14.09□□□□□ -0.15
CCDC3-202ENST00000378839 ADCYAP1R1P41586 468 aa14.09□□□□□ -0.15
CCDC3-202ENST00000378839 YWHAEP62258 255 aaKnown RBP14.09□□□□□ -0.15
CCDC3-202ENST00000378839 TTLL4Q14679 1199 aa14.09□□□□□ -0.15
CCDC3-202ENST00000378839 ANKRD20A8PQ5CZ79 823 aa14.09□□□□□ -0.15
CCDC3-202ENST00000378839 ZNF667Q5HYK9 610 aa14.09□□□□□ -0.15
CCDC3-202ENST00000378839 MARCH8Q5T0T0 291 aa14.09□□□□□ -0.15
CCDC3-202ENST00000378839 RNASEH2BQ5TBB1 312 aaKnown RBP14.09□□□□□ -0.15
CCDC3-202ENST00000378839 GKAP1Q5VSY0 366 aaPredicted RBP14.09□□□□□ -0.15
CCDC3-202ENST00000378839 CYP4V2Q6ZWL3 525 aaPredicted RBP14.09□□□□□ -0.15
CCDC3-202ENST00000378839 SAYSD1Q9NPB0 183 aa14.09□□□□□ -0.15
CCDC3-202ENST00000378839 RNF19AQ9NV58 838 aa14.09□□□□□ -0.15
CCDC3-202ENST00000378839 PCSK1NQ9UHG2 260 aa14.09□□□□□ -0.15
CCDC3-202ENST00000378839 SLC26A2P50443 739 aa14.08□□□□□ -0.15
CCDC3-202ENST00000378839 MTM1Q13496 603 aa14.08□□□□□ -0.15
CCDC3-202ENST00000378839 ZNF792Q3KQV3 632 aa14.08□□□□□ -0.15
CCDC3-202ENST00000378839 MSS51Q4VC12 460 aa14.08□□□□□ -0.15
CCDC3-202ENST00000378839 MICALCLQ6ZW33 695 aa14.08□□□□□ -0.15
CCDC3-202ENST00000378839 TAB3Q8N5C8 712 aaPredicted RBP14.08□□□□□ -0.15
CCDC3-202ENST00000378839 ELAC2Q9BQ52 826 aaKnown RBP14.08□□□□□ -0.15
CCDC3-202ENST00000378839 NFKBIZQ9BYH8 718 aa14.08□□□□□ -0.15
CCDC3-202ENST00000378839 ADAM33Q9BZ11 813 aa14.08□□□□□ -0.15
CCDC3-202ENST00000378839 MROH8Q9H579 483 aa14.08□□□□□ -0.15
CCDC3-202ENST00000378839 DNAH12Q6ZR08 3092 aa14.08□□□□□ -0.15
CCDC3-202ENST00000378839 TCRBV7S3A2A0A539 114 aa14.08□□□□□ -0.16
CCDC3-202ENST00000378839 GOLGA8MH3BSY2 632 aa14.08□□□□□ -0.16
CCDC3-202ENST00000378839 POLR2BP30876 1174 aaKnown RBP14.08□□□□□ -0.16
CCDC3-202ENST00000378839 GPD2P43304 727 aa14.08□□□□□ -0.16
CCDC3-202ENST00000378839 PTPN11Q06124 597 aaPredicted RBP14.08□□□□□ -0.16
CCDC3-202ENST00000378839 TAZQ16635 292 aa14.08□□□□□ -0.16
CCDC3-202ENST00000378839 PPP1R2P3Q6NXS1 205 aa14.08□□□□□ -0.16
CCDC3-202ENST00000378839 CAPN12Q6ZSI9 719 aa14.08□□□□□ -0.16
CCDC3-202ENST00000378839 ANKRD42Q8N9B4 389 aa14.08□□□□□ -0.16
CCDC3-202ENST00000378839 MAML1Q92585 1016 aa14.08□□□□□ -0.16
CCDC3-202ENST00000378839 NKD2Q969F2 451 aaPredicted RBP14.08□□□□□ -0.16
CCDC3-202ENST00000378839 LGALS13Q9UHV8 139 aa14.08□□□□□ -0.16
CCDC3-202ENST00000378839 ZSWIM8A7E2V4 1837 aa14.08□□□□□ -0.16
CCDC3-202ENST00000378839 ADCY6O43306 1168 aa14.08□□□□□ -0.16
CCDC3-202ENST00000378839 ATP2C2O75185 946 aa14.08□□□□□ -0.16
CCDC3-202ENST00000378839 PFKMP08237 780 aa14.08□□□□□ -0.16
CCDC3-202ENST00000378839 KDELR1P24390 212 aa14.08□□□□□ -0.16
CCDC3-202ENST00000378839 OTUD4Q01804 1114 aaKnown RBP14.08□□□□□ -0.16
CCDC3-202ENST00000378839 FAM187BQ17R55 369 aa14.08□□□□□ -0.16
CCDC3-202ENST00000378839 C12orf29Q8N999 325 aa14.08□□□□□ -0.16
CCDC3-202ENST00000378839 GDAP1Q8TB36 358 aa14.08□□□□□ -0.16
CCDC3-202ENST00000378839 ACTL9Q8TC94 416 aa14.08□□□□□ -0.16
CCDC3-202ENST00000378839 TMEM176AQ96HP8 235 aa14.08□□□□□ -0.16
CCDC3-202ENST00000378839 KIF9Q9HAQ2 790 aa14.08□□□□□ -0.16
CCDC3-202ENST00000378839 GJD2Q9UKL4 321 aa14.08□□□□□ -0.16
CCDC3-202ENST00000378839 WDR3Q9UNX4 943 aaKnown RBP eCLIP14.08□□□□□ -0.16
CCDC3-202ENST00000378839 DRG1Q9Y295 367 aaKnown RBP14.08□□□□□ -0.16
CCDC3-202ENST00000378839 IL18RAPO95256 599 aa14.07□□□□□ -0.16
CCDC3-202ENST00000378839 ITGAVP06756 1048 aa14.07□□□□□ -0.16
CCDC3-202ENST00000378839 DPH6Q7L8W6 267 aa14.07□□□□□ -0.16
CCDC3-202ENST00000378839 CNPY4Q8N129 248 aa14.07□□□□□ -0.16
CCDC3-202ENST00000378839 PRCCQ92733 491 aaPredicted RBP14.07□□□□□ -0.16
CCDC3-202ENST00000378839 LPIN3Q9BQK8 851 aa14.07□□□□□ -0.16
CCDC3-202ENST00000378839 TPX2Q9ULW0 747 aaKnown RBP14.07□□□□□ -0.16
CCDC3-202ENST00000378839 AKT3Q9Y243 479 aa14.07□□□□□ -0.16
CCDC3-202ENST00000378839 TCP11X1B4DZS4 312 aa14.07□□□□□ -0.16
CCDC3-202ENST00000378839 PPEF2O14830 753 aa14.07□□□□□ -0.16
CCDC3-202ENST00000378839 CST8O60676 142 aa14.07□□□□□ -0.16
CCDC3-202ENST00000378839 OAS1P00973 400 aaKnown RBP14.07□□□□□ -0.16
CCDC3-202ENST00000378839 IFNB1P01574 187 aa14.07□□□□□ -0.16
CCDC3-202ENST00000378839 VIMP08670 466 aaKnown RBP14.07□□□□□ -0.16
CCDC3-202ENST00000378839 BRAFP15056 766 aa14.07□□□□□ -0.16
CCDC3-202ENST00000378839 OSBPP22059 807 aa14.07□□□□□ -0.16
CCDC3-202ENST00000378839 ADORA2AP29274 412 aa14.07□□□□□ -0.16
CCDC3-202ENST00000378839 MIPP30301 263 aa14.07□□□□□ -0.16
CCDC3-202ENST00000378839 COPS2P61201 443 aa14.07□□□□□ -0.16
CCDC3-202ENST00000378839 MMRN1Q13201 1228 aa14.07□□□□□ -0.16
CCDC3-202ENST00000378839 FNBP1LQ5T0N5 605 aa14.07□□□□□ -0.16
CCDC3-202ENST00000378839 CGB2Q6NT52 195 aa14.07□□□□□ -0.16
CCDC3-202ENST00000378839 CROCCP2Q86T23 111 aa14.07□□□□□ -0.16
CCDC3-202ENST00000378839 SRRM1Q8IYB3 904 aaKnown RBP14.07□□□□□ -0.16
CCDC3-202ENST00000378839 PRMT7Q9NVM4 692 aaPredicted RBP14.07□□□□□ -0.16
CCDC3-202ENST00000378839 GGT7Q9UJ14 662 aa14.07□□□□□ -0.16
CCDC3-202ENST00000378839 FARP1Q9Y4F1 1045 aaPredicted RBP14.07□□□□□ -0.16
CCDC3-202ENST00000378839 SGK1O00141 431 aa14.06□□□□□ -0.16
CCDC3-202ENST00000378839 TSPAN1O60635 241 aa14.06□□□□□ -0.16
CCDC3-202ENST00000378839 GABBR2O75899 941 aa14.06□□□□□ -0.16
CCDC3-202ENST00000378839 SNAI1O95863 264 aaPredicted RBP14.06□□□□□ -0.16
CCDC3-202ENST00000378839 GPX6P59796 221 aa14.06□□□□□ -0.16
CCDC3-202ENST00000378839 TAP1Q03518 808 aa14.06□□□□□ -0.16
CCDC3-202ENST00000378839 MKRN3Q13064 507 aaKnown RBP14.06□□□□□ -0.16
CCDC3-202ENST00000378839 C9orf131Q5VYM1 1079 aa14.06□□□□□ -0.16
CCDC3-202ENST00000378839 TAOK1Q7L7X3 1001 aa14.06□□□□□ -0.16
CCDC3-202ENST00000378839 POLNQ7Z5Q5 900 aa14.06□□□□□ -0.16
CCDC3-202ENST00000378839 UNC45BQ8IWX7 931 aa14.06□□□□□ -0.16
CCDC3-202ENST00000378839 EXOC8Q8IYI6 725 aa14.06□□□□□ -0.16
CCDC3-202ENST00000378839 HPDLQ96IR7 371 aa14.06□□□□□ -0.16
CCDC3-202ENST00000378839 KCNK9Q9NPC2 374 aa14.06□□□□□ -0.16
CCDC3-202ENST00000378839 FGFR1OP2Q9NVK5 253 aa14.06□□□□□ -0.16
CCDC3-202ENST00000378839 AGAP1Q9UPQ3 857 aa14.06□□□□□ -0.16
CCDC3-202ENST00000378839 M0QYV0 167 aa14.06□□□□□ -0.16
CCDC3-202ENST00000378839 MCF2P10911 925 aa14.06□□□□□ -0.16
CCDC3-202ENST00000378839 HNRNPH1P31943 449 aaKnown RBP14.06□□□□□ -0.16
CCDC3-202ENST00000378839 PHKA2P46019 1235 aa14.06□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 55.4 ms