RNA–Protein interactions for RNA: ENST00000377819.9

RTN3-206, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,937 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-206ENST00000377819 ZNF671Q8TAW3 534 aa11.04□□□□□ -0.64
RTN3-206ENST00000377819 ZBTB7BO15156 539 aaPredicted RBP11.04□□□□□ -0.64
RTN3-206ENST00000377819 LRG1P02750 347 aa11.04□□□□□ -0.64
RTN3-206ENST00000377819 PCCAP05165 728 aaPredicted RBP11.04□□□□□ -0.64
RTN3-206ENST00000377819 HSMCR30P0CW71 290 aa11.04□□□□□ -0.64
RTN3-206ENST00000377819 CDC25AP30304 524 aa11.04□□□□□ -0.64
RTN3-206ENST00000377819 HOXA13P31271 388 aaPredicted RBP11.04□□□□□ -0.64
RTN3-206ENST00000377819 NCAPHQ15003 741 aa11.04□□□□□ -0.64
RTN3-206ENST00000377819 WDR72Q3MJ13 1102 aa11.04□□□□□ -0.64
RTN3-206ENST00000377819 NAPEPLDQ6IQ20 393 aa11.04□□□□□ -0.64
RTN3-206ENST00000377819 FAM117BQ6P1L5 589 aa11.04□□□□□ -0.64
RTN3-206ENST00000377819 ENKURQ8TC29 256 aa11.04□□□□□ -0.64
RTN3-206ENST00000377819 SPATA18Q8TC71 538 aa11.04□□□□□ -0.64
RTN3-206ENST00000377819 USP33Q8TEY7 942 aa11.04□□□□□ -0.64
RTN3-206ENST00000377819 SNRNP27Q8WVK2 155 aaKnown RBP11.04□□□□□ -0.64
RTN3-206ENST00000377819 HAVCR1Q96D42 359 aa11.04□□□□□ -0.64
RTN3-206ENST00000377819 FAM20AQ96MK3 541 aa11.04□□□□□ -0.64
RTN3-206ENST00000377819 TRIM51Q9BSJ1 452 aa11.04□□□□□ -0.64
RTN3-206ENST00000377819 EMILIN2Q9BXX0 1053 aa11.04□□□□□ -0.64
RTN3-206ENST00000377819 ALG13Q9NP73 1137 aaKnown RBP11.04□□□□□ -0.64
RTN3-206ENST00000377819 KLHL1Q9NR64 748 aa11.04□□□□□ -0.64
RTN3-206ENST00000377819 MGAT4AQ9UM21 535 aa11.04□□□□□ -0.64
RTN3-206ENST00000377819 PPIEQ9UNP9 301 aaKnown RBP11.04□□□□□ -0.64
RTN3-206ENST00000377819 TMEM131LA2VDJ0 1609 aa11.03□□□□□ -0.64
RTN3-206ENST00000377819 GNG14A0A1W2PPG7 69 aa11.03□□□□□ -0.64
RTN3-206ENST00000377819 DYTNA2CJ06 578 aa11.03□□□□□ -0.64
RTN3-206ENST00000377819 KRT33AO76009 404 aa11.03□□□□□ -0.64
RTN3-206ENST00000377819 USP17L8P0C7I0 530 aa11.03□□□□□ -0.64
RTN3-206ENST00000377819 FOSL2P15408 326 aa11.03□□□□□ -0.64
RTN3-206ENST00000377819 IRX1P78414 480 aaPredicted RBP11.03□□□□□ -0.64
RTN3-206ENST00000377819 KLHL17Q6TDP4 642 aa11.03□□□□□ -0.64
RTN3-206ENST00000377819 OTOAQ7RTW8 1153 aa11.03□□□□□ -0.64
RTN3-206ENST00000377819 SMYD1Q8NB12 490 aa11.03□□□□□ -0.64
RTN3-206ENST00000377819 B3GALNT2Q8NCR0 500 aa11.03□□□□□ -0.64
RTN3-206ENST00000377819 PIGOQ8TEQ8 1089 aa11.03□□□□□ -0.64
RTN3-206ENST00000377819 CNPPD1Q9BV87 410 aa11.03□□□□□ -0.64
RTN3-206ENST00000377819 NRXN3Q9Y4C0 1643 aa11.03□□□□□ -0.64
RTN3-206ENST00000377819 FAM47DPA6NHR8 397 aa11.03□□□□□ -0.64
RTN3-206ENST00000377819 CHURC1-FNTBB4DL54 471 aa11.03□□□□□ -0.64
RTN3-206ENST00000377819 VPS26AO75436 327 aa11.03□□□□□ -0.64
RTN3-206ENST00000377819 TNFRSF21O75509 655 aa11.03□□□□□ -0.64
RTN3-206ENST00000377819 UBA1P22314 1058 aaKnown RBP11.03□□□□□ -0.64
RTN3-206ENST00000377819 VAMP7P51809 220 aa11.03□□□□□ -0.64
RTN3-206ENST00000377819 MCCD1P59942 119 aaPredicted RBP11.03□□□□□ -0.64
RTN3-206ENST00000377819 BNC1Q01954 994 aa11.03□□□□□ -0.64
RTN3-206ENST00000377819 PDK1Q15118 436 aa11.03□□□□□ -0.64
RTN3-206ENST00000377819 KCNV1Q6PIU1 500 aa11.03□□□□□ -0.64
RTN3-206ENST00000377819 USP17L2Q6R6M4 530 aa11.03□□□□□ -0.64
RTN3-206ENST00000377819 RPTNQ6XPR3 784 aa11.03□□□□□ -0.64
RTN3-206ENST00000377819 CACTIN-AS1Q8N1I8 211 aa11.03□□□□□ -0.64
RTN3-206ENST00000377819 C18orf25Q96B23 403 aaPredicted RBP11.03□□□□□ -0.64
RTN3-206ENST00000377819 SEPT5Q99719 369 aaPredicted RBP11.03□□□□□ -0.64
RTN3-206ENST00000377819 NLNQ9BYT8 704 aa11.03□□□□□ -0.64
RTN3-206ENST00000377819 RBAKQ9NYW8 714 aaPredicted RBP11.03□□□□□ -0.64
RTN3-206ENST00000377819 PIN4Q9Y237 131 aaKnown RBP11.03□□□□□ -0.64
RTN3-206ENST00000377819 LOC100653049A0A140TA62 436 aa11.03□□□□□ -0.64
RTN3-206ENST00000377819 TTLL13PA6NNM8 815 aa11.03□□□□□ -0.64
RTN3-206ENST00000377819 B2RBV5 119 aa11.03□□□□□ -0.64
RTN3-206ENST00000377819 SLC16A4O15374 487 aa11.03□□□□□ -0.64
RTN3-206ENST00000377819 KPNA6O60684 536 aa11.03□□□□□ -0.64
RTN3-206ENST00000377819 KRT34O76011 436 aa11.03□□□□□ -0.64
RTN3-206ENST00000377819 S100A6P06703 90 aa11.03□□□□□ -0.64
RTN3-206ENST00000377819 P4HBP07237 508 aaKnown RBP11.03□□□□□ -0.64
RTN3-206ENST00000377819 RBP5P82980 135 aa11.03□□□□□ -0.64
RTN3-206ENST00000377819 DHX34Q14147 1143 aaKnown RBP11.03□□□□□ -0.64
RTN3-206ENST00000377819 STARD3Q14849 445 aa11.03□□□□□ -0.64
RTN3-206ENST00000377819 SNRNP48Q6IEG0 339 aaKnown RBP11.03□□□□□ -0.64
RTN3-206ENST00000377819 NFRKBQ6P4R8 1299 aa11.03□□□□□ -0.64
RTN3-206ENST00000377819 GPR141Q7Z602 305 aa11.03□□□□□ -0.64
RTN3-206ENST00000377819 SLC20A1Q8WUM9 679 aa11.03□□□□□ -0.64
RTN3-206ENST00000377819 EDC3Q96F86 508 aaKnown RBP11.03□□□□□ -0.64
RTN3-206ENST00000377819 MIEF1Q9NQG6 463 aa11.03□□□□□ -0.64
RTN3-206ENST00000377819 RNF146Q9NTX7 359 aa11.03□□□□□ -0.64
RTN3-206ENST00000377819 NDOR1Q9UHB4 597 aa11.03□□□□□ -0.64
RTN3-206ENST00000377819 SMAPO00193 183 aa11.03□□□□□ -0.64
RTN3-206ENST00000377819 IFRD1O00458 451 aaPredicted RBP11.03□□□□□ -0.64
RTN3-206ENST00000377819 KIAA0391O15091 583 aaKnown RBP11.03□□□□□ -0.64
RTN3-206ENST00000377819 VAV1P15498 845 aa11.03□□□□□ -0.64
RTN3-206ENST00000377819 CDC25BP30305 580 aa11.03□□□□□ -0.64
RTN3-206ENST00000377819 CHN2P52757 468 aa11.03□□□□□ -0.64
RTN3-206ENST00000377819 PRKAA1Q13131 559 aa11.03□□□□□ -0.64
RTN3-206ENST00000377819 NKX1-1Q15270 411 aaPredicted RBP11.03□□□□□ -0.64
RTN3-206ENST00000377819 TERF2Q15554 542 aa11.03□□□□□ -0.64
RTN3-206ENST00000377819 PCSK7Q16549 785 aa11.03□□□□□ -0.64
RTN3-206ENST00000377819 CLEC16AQ2KHT3 1053 aa11.03□□□□□ -0.64
RTN3-206ENST00000377819 IER5Q5VY09 327 aa11.03□□□□□ -0.64
RTN3-206ENST00000377819 PACS1Q6VY07 963 aa11.03□□□□□ -0.64
RTN3-206ENST00000377819 UNC13DQ70J99 1090 aa11.03□□□□□ -0.64
RTN3-206ENST00000377819 OTUD7AQ8TE49 926 aaPredicted RBP11.03□□□□□ -0.64
RTN3-206ENST00000377819 CLMNQ96JQ2 1002 aa11.03□□□□□ -0.64
RTN3-206ENST00000377819 FKBP14Q9NWM8 211 aa11.03□□□□□ -0.64
RTN3-206ENST00000377819 DPP7Q9UHL4 492 aa11.03□□□□□ -0.64
RTN3-206ENST00000377819 POLG2Q9UHN1 485 aa11.03□□□□□ -0.64
RTN3-206ENST00000377819 ARHGAP31Q2M1Z3 1444 aa11.02□□□□□ -0.64
RTN3-206ENST00000377819 SSH2Q76I76 1423 aa11.02□□□□□ -0.64
RTN3-206ENST00000377819 UBE2QL1A1L167 161 aa11.02□□□□□ -0.64
RTN3-206ENST00000377819 USP17L3A6NCW0 530 aa11.02□□□□□ -0.64
RTN3-206ENST00000377819 USP17L4A6NCW7 530 aa11.02□□□□□ -0.64
RTN3-206ENST00000377819 ANKRD65E5RJM6 399 aa11.02□□□□□ -0.64
RTN3-206ENST00000377819 SEC24BO95487 1268 aa11.02□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms