RNA–Protein interactions for RNA: ENST00000375224.1

UBR4-202, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 2 BASIC

Gene UBR4, Length 3,475 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-202ENST00000375224 ZNF236Q9UL36 1845 aa8.66□□□□□ -1.02
UBR4-202ENST00000375224 NDC80O14777 642 aa8.66□□□□□ -1.02
UBR4-202ENST00000375224 ITGB3P05106 788 aa8.66□□□□□ -1.02
UBR4-202ENST00000375224 NUDT17P0C025 328 aa8.66□□□□□ -1.02
UBR4-202ENST00000375224 FAM163BP0C2L3 166 aa8.66□□□□□ -1.02
UBR4-202ENST00000375224 FLT3P36888 993 aa8.66□□□□□ -1.02
UBR4-202ENST00000375224 MKRN3Q13064 507 aaKnown RBP8.66□□□□□ -1.02
UBR4-202ENST00000375224 PTK6Q13882 451 aa8.66□□□□□ -1.02
UBR4-202ENST00000375224 C2CD6Q53TS8 623 aa8.66□□□□□ -1.02
UBR4-202ENST00000375224 ZDHHC24Q6UX98 284 aa8.66□□□□□ -1.02
UBR4-202ENST00000375224 ARHGAP22Q7Z5H3 698 aa8.66□□□□□ -1.02
UBR4-202ENST00000375224 FBXO25Q8TCJ0 367 aa8.66□□□□□ -1.02
UBR4-202ENST00000375224 CCHCR1Q8TD31 782 aa8.66□□□□□ -1.02
UBR4-202ENST00000375224 GCOM2Q9BZD3 368 aaPredicted RBP8.66□□□□□ -1.02
UBR4-202ENST00000375224 C11orf97A0A1B0GVM6 126 aaPredicted RBP8.65□□□□□ -1.02
UBR4-202ENST00000375224 TSPAN1O60635 241 aa8.65□□□□□ -1.02
UBR4-202ENST00000375224 TJP3O95049 919 aa8.65□□□□□ -1.02
UBR4-202ENST00000375224 VDRP11473 427 aa8.65□□□□□ -1.02
UBR4-202ENST00000375224 RARGP13631 454 aa8.65□□□□□ -1.02
UBR4-202ENST00000375224 SSTR3P32745 418 aaPredicted RBP8.65□□□□□ -1.02
UBR4-202ENST00000375224 GRM5P41594 1212 aa8.65□□□□□ -1.02
UBR4-202ENST00000375224 TAS2R40P59535 323 aa8.65□□□□□ -1.02
UBR4-202ENST00000375224 KRT17Q04695 432 aa8.65□□□□□ -1.02
UBR4-202ENST00000375224 ZNF844Q08AG5 666 aa8.65□□□□□ -1.02
UBR4-202ENST00000375224 STILQ15468 1287 aa8.65□□□□□ -1.02
UBR4-202ENST00000375224 SLC10A6Q3KNW5 377 aa8.65□□□□□ -1.02
UBR4-202ENST00000375224 ZFYVE27Q5T4F4 411 aa8.65□□□□□ -1.02
UBR4-202ENST00000375224 WLSQ5T9L3 541 aa8.65□□□□□ -1.02
UBR4-202ENST00000375224 KCTD16Q68DU8 428 aa8.65□□□□□ -1.02
UBR4-202ENST00000375224 SDCCAG8Q86SQ7 713 aaPredicted RBP8.65□□□□□ -1.02
UBR4-202ENST00000375224 RNF168Q8IYW5 571 aaPredicted RBP8.65□□□□□ -1.02
UBR4-202ENST00000375224 FNIP1Q8TF40 1166 aa8.65□□□□□ -1.02
UBR4-202ENST00000375224 C1orf54Q8WWF1 131 aa8.65□□□□□ -1.02
UBR4-202ENST00000375224 SNF8Q96H20 258 aa8.65□□□□□ -1.02
UBR4-202ENST00000375224 HPDLQ96IR7 371 aa8.65□□□□□ -1.02
UBR4-202ENST00000375224 CPB2Q96IY4 423 aa8.65□□□□□ -1.02
UBR4-202ENST00000375224 ASIC3Q9UHC3 531 aa8.65□□□□□ -1.02
UBR4-202ENST00000375224 POLIQ9UNA4 740 aa8.65□□□□□ -1.02
UBR4-202ENST00000375224 PTPN22Q9Y2R2 807 aa8.65□□□□□ -1.02
UBR4-202ENST00000375224 TCRBV5S1A1TA0A578 114 aa8.65□□□□□ -1.03
UBR4-202ENST00000375224 SIGLEC16A6NMB1 481 aa8.65□□□□□ -1.03
UBR4-202ENST00000375224 CELF2O95319 508 aaKnown RBP8.65□□□□□ -1.03
UBR4-202ENST00000375224 RALAP11233 206 aa8.65□□□□□ -1.03
UBR4-202ENST00000375224 PTPN7P35236 360 aa8.65□□□□□ -1.03
UBR4-202ENST00000375224 IRAK1P51617 712 aa8.65□□□□□ -1.03
UBR4-202ENST00000375224 RAD23BP54727 409 aa8.65□□□□□ -1.03
UBR4-202ENST00000375224 PTPN11Q06124 597 aaPredicted RBP8.65□□□□□ -1.03
UBR4-202ENST00000375224 MYO1EQ12965 1108 aa8.65□□□□□ -1.03
UBR4-202ENST00000375224 NFX1Q12986 1120 aaKnown RBP8.65□□□□□ -1.03
UBR4-202ENST00000375224 KLF1Q13351 362 aaPredicted RBP8.65□□□□□ -1.03
UBR4-202ENST00000375224 ZNF268Q14587 947 aaPredicted RBP8.65□□□□□ -1.03
UBR4-202ENST00000375224 KRT71Q3SY84 523 aa8.65□□□□□ -1.03
UBR4-202ENST00000375224 PPP1R15BQ5SWA1 713 aa8.65□□□□□ -1.03
UBR4-202ENST00000375224 LLGL2Q6P1M3 1020 aa8.65□□□□□ -1.03
UBR4-202ENST00000375224 TMEM192Q8IY95 271 aa8.65□□□□□ -1.03
UBR4-202ENST00000375224 KIAA0319LQ8IZA0 1049 aa8.65□□□□□ -1.03
UBR4-202ENST00000375224 CCDC89Q8N998 374 aa8.65□□□□□ -1.03
UBR4-202ENST00000375224 TFAP2BQ92481 460 aa8.65□□□□□ -1.03
UBR4-202ENST00000375224 TMEM176AQ96HP8 235 aa8.65□□□□□ -1.03
UBR4-202ENST00000375224 MCEEQ96PE7 176 aa8.65□□□□□ -1.03
UBR4-202ENST00000375224 MMADHCQ9H3L0 296 aaPredicted RBP8.65□□□□□ -1.03
UBR4-202ENST00000375224 SYNCQ9H7C4 482 aa8.65□□□□□ -1.03
UBR4-202ENST00000375224 DPP3Q9NY33 737 aa8.65□□□□□ -1.03
UBR4-202ENST00000375224 NRCAMQ92823 1304 aa8.65□□□□□ -1.03
UBR4-202ENST00000375224 SRRM3A6NNA2 597 aaPredicted RBP8.64□□□□□ -1.03
UBR4-202ENST00000375224 CILPO75339 1184 aa8.64□□□□□ -1.03
UBR4-202ENST00000375224 HMGCRP04035 888 aa8.64□□□□□ -1.03
UBR4-202ENST00000375224 KCNJ1P48048 391 aa8.64□□□□□ -1.03
UBR4-202ENST00000375224 GNGT1P63211 74 aa8.64□□□□□ -1.03
UBR4-202ENST00000375224 SFSWAPQ12872 951 aaKnown RBP8.64□□□□□ -1.03
UBR4-202ENST00000375224 ACAP1Q15027 740 aa8.64□□□□□ -1.03
UBR4-202ENST00000375224 CNGA2Q16280 664 aa8.64□□□□□ -1.03
UBR4-202ENST00000375224 HADHQ16836 314 aaKnown RBP8.64□□□□□ -1.03
UBR4-202ENST00000375224 ZNF365Q70YC5 407 aa8.64□□□□□ -1.03
UBR4-202ENST00000375224 TRMT10CQ7L0Y3 403 aaKnown RBP8.64□□□□□ -1.03
UBR4-202ENST00000375224 POLNQ7Z5Q5 900 aa8.64□□□□□ -1.03
UBR4-202ENST00000375224 MFN1Q8IWA4 741 aa8.64□□□□□ -1.03
UBR4-202ENST00000375224 WDTC1Q8N5D0 677 aa8.64□□□□□ -1.03
UBR4-202ENST00000375224 DNAI2Q9GZS0 605 aa8.64□□□□□ -1.03
UBR4-202ENST00000375224 STMN4Q9H169 189 aaPredicted RBP8.64□□□□□ -1.03
UBR4-202ENST00000375224 BARX2Q9UMQ3 279 aaPredicted RBP8.64□□□□□ -1.03
UBR4-202ENST00000375224 AGAP1Q9UPQ3 857 aa8.64□□□□□ -1.03
UBR4-202ENST00000375224 SMIM35A0A1B0GVV1 85 aa8.64□□□□□ -1.03
UBR4-202ENST00000375224 A6NJR5 290 aa8.64□□□□□ -1.03
UBR4-202ENST00000375224 EIF3HO15372 352 aaKnown RBP eCLIP8.64□□□□□ -1.032e-11■■■□□ 14.6
UBR4-202ENST00000375224 KRT1P04264 644 aa8.64□□□□□ -1.03
UBR4-202ENST00000375224 KRT7P08729 469 aa8.64□□□□□ -1.03
UBR4-202ENST00000375224 KRT3P12035 628 aa8.64□□□□□ -1.03
UBR4-202ENST00000375224 ATF2P15336 505 aa8.64□□□□□ -1.03
UBR4-202ENST00000375224 PAPOLAP51003 745 aaKnown RBP8.64□□□□□ -1.03
UBR4-202ENST00000375224 YARSP54577 528 aaKnown RBP8.64□□□□□ -1.03
UBR4-202ENST00000375224 RPL7AP62424 266 aaKnown RBP8.64□□□□□ -1.03
UBR4-202ENST00000375224 MARCH8Q5T0T0 291 aa8.64□□□□□ -1.03
UBR4-202ENST00000375224 DENND1BQ6P3S1 775 aa8.64□□□□□ -1.03
UBR4-202ENST00000375224 DRICH1Q6PGQ1 229 aaPredicted RBP8.64□□□□□ -1.03
UBR4-202ENST00000375224 GET4Q7L5D6 327 aaPredicted RBP8.64□□□□□ -1.03
UBR4-202ENST00000375224 SPATS2Q86XZ4 545 aaKnown RBP8.64□□□□□ -1.03
UBR4-202ENST00000375224 TSC22D3Q99576 134 aa8.64□□□□□ -1.03
UBR4-202ENST00000375224 YIPF2Q9BWQ6 316 aa8.64□□□□□ -1.03
UBR4-202ENST00000375224 FOXP3Q9BZS1 431 aa8.64□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms