RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 SLC9A9Q8IVB4 645 aa23.23■■□□□ 1.31
CCDC28B-201ENST00000373602 STKLD1Q8NE28 680 aa23.23■■□□□ 1.31
CCDC28B-201ENST00000373602 PLEKHO2Q8TD55 490 aa23.23■■□□□ 1.31
CCDC28B-201ENST00000373602 CSGALNACT1Q8TDX6 532 aa23.23■■□□□ 1.31
CCDC28B-201ENST00000373602 CRTAC1Q9NQ79 661 aa23.23■■□□□ 1.31
CCDC28B-201ENST00000373602 SPATA6Q9NWH7 488 aaPredicted RBP23.23■■□□□ 1.31
CCDC28B-201ENST00000373602 MAGED2Q9UNF1 606 aaPredicted RBP23.23■■□□□ 1.31
CCDC28B-201ENST00000373602 F5P12259 2224 aa23.23■■□□□ 1.31
CCDC28B-201ENST00000373602 CACNA1IQ9P0X4 2223 aa23.23■■□□□ 1.31
CCDC28B-201ENST00000373602 SOBPA7XYQ1 873 aa23.22■■□□□ 1.31
CCDC28B-201ENST00000373602 PDXKO00764 312 aa23.22■■□□□ 1.31
CCDC28B-201ENST00000373602 TACC1O75410 805 aa23.22■■□□□ 1.31
CCDC28B-201ENST00000373602 DDX6P26196 483 aaKnown RBP eCLIP23.22■■□□□ 1.311e-7■■■■□ 19.8
CCDC28B-201ENST00000373602 MAGEA11P43364 429 aa23.22■■□□□ 1.31
CCDC28B-201ENST00000373602 CASP4P49662 377 aa23.22■■□□□ 1.31
CCDC28B-201ENST00000373602 PSMC1P62191 440 aaKnown RBP23.22■■□□□ 1.31
CCDC28B-201ENST00000373602 TRPC3Q13507 836 aa23.22■■□□□ 1.31
CCDC28B-201ENST00000373602 ARHGAP29Q52LW3 1261 aa23.22■■□□□ 1.31
CCDC28B-201ENST00000373602 C4orf50Q6ZRC1 276 aa23.22■■□□□ 1.31
CCDC28B-201ENST00000373602 CMTM8Q8IZV2 173 aa23.22■■□□□ 1.31
CCDC28B-201ENST00000373602 FSIP1Q8NA03 581 aa23.22■■□□□ 1.31
CCDC28B-201ENST00000373602 BPIFB1Q8TDL5 484 aa23.22■■□□□ 1.31
CCDC28B-201ENST00000373602 PARD3BQ8TEW8 1205 aa23.22■■□□□ 1.31
CCDC28B-201ENST00000373602 FAM3CQ92520 227 aa23.22■■□□□ 1.31
CCDC28B-201ENST00000373602 TRMT2BQ96GJ1 504 aaKnown RBP23.22■■□□□ 1.31
CCDC28B-201ENST00000373602 MYRFLQ96LU7 910 aa23.22■■□□□ 1.31
CCDC28B-201ENST00000373602 UXTQ9UBK9 157 aaPredicted RBP23.22■■□□□ 1.31
CCDC28B-201ENST00000373602 NDRG2Q9UN36 371 aaKnown RBP23.22■■□□□ 1.31
CCDC28B-201ENST00000373602 SLC38A8A6NNN8 435 aa23.21■■□□□ 1.31
CCDC28B-201ENST00000373602 PDGFRBP09619 1106 aa23.21■■□□□ 1.31
CCDC28B-201ENST00000373602 PRR29P0C7W0 189 aa23.21■■□□□ 1.31
CCDC28B-201ENST00000373602 ATICP31939 592 aa23.21■■□□□ 1.31
CCDC28B-201ENST00000373602 AP3M2P53677 418 aa23.21■■□□□ 1.31
CCDC28B-201ENST00000373602 MYL6P60660 151 aa23.21■■□□□ 1.31
CCDC28B-201ENST00000373602 CLDN10P78369 228 aa23.21■■□□□ 1.31
CCDC28B-201ENST00000373602 MAPRE1Q15691 268 aaKnown RBP23.21■■□□□ 1.31
CCDC28B-201ENST00000373602 WDR72Q3MJ13 1102 aa23.21■■□□□ 1.31
CCDC28B-201ENST00000373602 CELF5Q8N6W0 485 aaKnown RBP23.21■■□□□ 1.31
CCDC28B-201ENST00000373602 MYLPFQ96A32 169 aa23.21■■□□□ 1.31
CCDC28B-201ENST00000373602 MSANTD3Q96H12 275 aa23.21■■□□□ 1.31
CCDC28B-201ENST00000373602 MRPL45Q9BRJ2 306 aaKnown RBP23.21■■□□□ 1.31
CCDC28B-201ENST00000373602 XYLT2Q9H1B5 865 aa23.21■■□□□ 1.31
CCDC28B-201ENST00000373602 MAGEC2Q9UBF1 373 aaPredicted RBP23.21■■□□□ 1.31
CCDC28B-201ENST00000373602 ZFHX2Q9C0A1 2572 aaPredicted RBP23.2■■□□□ 1.3
CCDC28B-201ENST00000373602 DENND4CQ5VZ89 1909 aa23.2■■□□□ 1.3
CCDC28B-201ENST00000373602 LAMTOR5O43504 91 aa23.2■■□□□ 1.3
CCDC28B-201ENST00000373602 RHOBTB3O94955 611 aa23.2■■□□□ 1.3
CCDC28B-201ENST00000373602 GNL1P36915 607 aaPredicted RBP23.2■■□□□ 1.3
CCDC28B-201ENST00000373602 TNNC1P63316 161 aa23.2■■□□□ 1.3
CCDC28B-201ENST00000373602 DPYDQ12882 1025 aa23.2■■□□□ 1.3
CCDC28B-201ENST00000373602 VSTM1Q6UX27 236 aa23.2■■□□□ 1.3
CCDC28B-201ENST00000373602 KRBA2Q6ZNG9 492 aa23.2■■□□□ 1.3
CCDC28B-201ENST00000373602 MON1AQ86VX9 555 aa23.2■■□□□ 1.3
CCDC28B-201ENST00000373602 SCN4BQ8IWT1 228 aa23.2■■□□□ 1.3
CCDC28B-201ENST00000373602 MAB21L3Q8N8X9 362 aa23.2■■□□□ 1.3
CCDC28B-201ENST00000373602 MRPS31Q92665 395 aaKnown RBP23.2■■□□□ 1.3
CCDC28B-201ENST00000373602 SYAP1Q96A49 352 aaPredicted RBP23.2■■□□□ 1.3
CCDC28B-201ENST00000373602 ZFYVE19Q96K21 471 aa23.2■■□□□ 1.3
CCDC28B-201ENST00000373602 SMG9Q9H0W8 520 aaKnown RBP23.2■■□□□ 1.3
CCDC28B-201ENST00000373602 SNX25Q9H3E2 840 aa23.2■■□□□ 1.3
CCDC28B-201ENST00000373602 SEMA4AQ9H3S1 761 aa23.2■■□□□ 1.3
CCDC28B-201ENST00000373602 GOLPH3LQ9H4A5 285 aa23.2■■□□□ 1.3
CCDC28B-201ENST00000373602 C8orf33Q9H7E9 229 aaPredicted RBP23.2■■□□□ 1.3
CCDC28B-201ENST00000373602 FBXO4Q9UKT5 387 aa23.2■■□□□ 1.3
CCDC28B-201ENST00000373602 NME7Q9Y5B8 376 aa23.2■■□□□ 1.3
CCDC28B-201ENST00000373602 PATJQ8NI35 1801 aa23.19■■□□□ 1.3
CCDC28B-201ENST00000373602 LRRIQ3A6PVS8 624 aaPredicted RBP23.19■■□□□ 1.3
CCDC28B-201ENST00000373602 PHACTR2O75167 634 aa23.19■■□□□ 1.3
CCDC28B-201ENST00000373602 TADA3O75528 432 aa23.19■■□□□ 1.3
CCDC28B-201ENST00000373602 NR3C1P04150 777 aa23.19■■□□□ 1.3
CCDC28B-201ENST00000373602 CCNE1P24864 410 aa23.19■■□□□ 1.3
CCDC28B-201ENST00000373602 AVPR1AP37288 418 aa23.19■■□□□ 1.3
CCDC28B-201ENST00000373602 PLCB2Q00722 1185 aa23.19■■□□□ 1.3
CCDC28B-201ENST00000373602 ZNF528Q3MIS6 628 aa23.19■■□□□ 1.3
CCDC28B-201ENST00000373602 TDRD10Q5VZ19 366 aaKnown RBP23.19■■□□□ 1.3
CCDC28B-201ENST00000373602 TXNDC8Q6A555 127 aa23.19■■□□□ 1.3
CCDC28B-201ENST00000373602 C1orf228Q6PIY5 440 aa23.19■■□□□ 1.3
CCDC28B-201ENST00000373602 MYCBPAPQ8TBZ2 947 aa23.19■■□□□ 1.3
CCDC28B-201ENST00000373602 CCDC47Q96A33 483 aaKnown RBP23.19■■□□□ 1.3
CCDC28B-201ENST00000373602 VRTNQ9H8Y1 702 aa23.19■■□□□ 1.3
CCDC28B-201ENST00000373602 R4GN57 208 aa23.19■■□□□ 1.3
CCDC28B-201ENST00000373602 OBSL1O75147 1896 aa23.18■■□□□ 1.3
CCDC28B-201ENST00000373602 KIF20AO95235 890 aa23.18■■□□□ 1.3
CCDC28B-201ENST00000373602 C4BPAP04003 597 aaKnown RBP23.18■■□□□ 1.3
CCDC28B-201ENST00000373602 BDNFP23560 247 aa23.18■■□□□ 1.3
CCDC28B-201ENST00000373602 KPNA1P52294 538 aaPredicted RBP23.18■■□□□ 1.3
CCDC28B-201ENST00000373602 BIRC3Q13489 604 aa23.18■■□□□ 1.3
CCDC28B-201ENST00000373602 BECN1Q14457 450 aa23.18■■□□□ 1.3
CCDC28B-201ENST00000373602 ZC3H14Q6PJT7 736 aaKnown RBP23.18■■□□□ 1.3
CCDC28B-201ENST00000373602 OR6B3Q8NGW1 331 aa23.18■■□□□ 1.3
CCDC28B-201ENST00000373602 USP13Q92995 863 aaPredicted RBP23.18■■□□□ 1.3
CCDC28B-201ENST00000373602 PCED1BQ96HM7 432 aa23.18■■□□□ 1.3
CCDC28B-201ENST00000373602 SPATA17Q96L03 361 aa23.18■■□□□ 1.3
CCDC28B-201ENST00000373602 CEP295NLQ96MC4 621 aa23.18■■□□□ 1.3
CCDC28B-201ENST00000373602 CHRDQ9H2X0 955 aa23.18■■□□□ 1.3
CCDC28B-201ENST00000373602 KIF9Q9HAQ2 790 aa23.18■■□□□ 1.3
CCDC28B-201ENST00000373602 GDPD2Q9HCC8 539 aa23.18■■□□□ 1.3
CCDC28B-201ENST00000373602 THG1LQ9NWX6 298 aaKnown RBP23.18■■□□□ 1.3
CCDC28B-201ENST00000373602 GTSE1Q9NYZ3 720 aa23.18■■□□□ 1.3
CCDC28B-201ENST00000373602 NXF1Q9UBU9 619 aaKnown RBP23.18■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms