RNA–Protein interactions for RNA: ENST00000373006.5

USP49-201, Transcript of ubiquitin specific peptidase 49, humanhuman

TSL 1 (best) BASIC

Gene USP49, Length 3,177 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP49-201ENST00000373006 ZNF398Q8TD17 642 aa14.36□□□□□ -0.11
USP49-201ENST00000373006 IFT43Q96FT9 208 aa14.36□□□□□ -0.11
USP49-201ENST00000373006 RBM41Q96IZ5 413 aaKnown RBP14.36□□□□□ -0.11
USP49-201ENST00000373006 RANBP17Q9H2T7 1088 aaKnown RBP14.36□□□□□ -0.11
USP49-201ENST00000373006 AGO4Q9HCK5 861 aaKnown RBP14.36□□□□□ -0.11
USP49-201ENST00000373006 STX18Q9P2W9 335 aaKnown RBP14.36□□□□□ -0.11
USP49-201ENST00000373006 E5RJQ4 531 aa14.36□□□□□ -0.11
USP49-201ENST00000373006 FCHO1O14526 889 aa14.36□□□□□ -0.11
USP49-201ENST00000373006 ENO1P06733 434 aaKnown RBP14.36□□□□□ -0.11
USP49-201ENST00000373006 MYCLP12524 364 aaPredicted RBP14.36□□□□□ -0.11
USP49-201ENST00000373006 EIF2AK2P19525 551 aaKnown RBP14.36□□□□□ -0.11
USP49-201ENST00000373006 MRPS9P82933 396 aaKnown RBP14.36□□□□□ -0.11
USP49-201ENST00000373006 ZNF252P-AS1Q0IIN9 211 aa14.36□□□□□ -0.11
USP49-201ENST00000373006 AP1B1Q10567 949 aa14.36□□□□□ -0.11
USP49-201ENST00000373006 KCNT1Q5JUK3 1230 aa14.36□□□□□ -0.11
USP49-201ENST00000373006 ENOSF1Q7L5Y1 443 aa14.36□□□□□ -0.11
USP49-201ENST00000373006 USP37Q86T82 979 aa14.36□□□□□ -0.11
USP49-201ENST00000373006 SKA1Q96BD8 255 aa14.36□□□□□ -0.11
USP49-201ENST00000373006 SERAC1Q96JX3 654 aa14.36□□□□□ -0.11
USP49-201ENST00000373006 FNBP1Q96RU3 617 aa14.36□□□□□ -0.11
USP49-201ENST00000373006 CYTH2Q99418 400 aa14.36□□□□□ -0.11
USP49-201ENST00000373006 GORASP1Q9BQQ3 440 aa14.36□□□□□ -0.11
USP49-201ENST00000373006 VPS11Q9H270 941 aa14.36□□□□□ -0.11
USP49-201ENST00000373006 PARVAQ9NVD7 372 aa14.36□□□□□ -0.11
USP49-201ENST00000373006 PHBP35232 272 aa14.36□□□□□ -0.11
USP49-201ENST00000373006 BPIFB4P59827 614 aa14.36□□□□□ -0.11
USP49-201ENST00000373006 OGDHQ02218 1023 aa14.36□□□□□ -0.11
USP49-201ENST00000373006 KDSRQ06136 332 aa14.36□□□□□ -0.11
USP49-201ENST00000373006 AOC3Q16853 763 aa14.36□□□□□ -0.11
USP49-201ENST00000373006 TDRD10Q5VZ19 366 aaKnown RBP14.36□□□□□ -0.11
USP49-201ENST00000373006 DCUN1D2Q6PH85 259 aa14.36□□□□□ -0.11
USP49-201ENST00000373006 ZNF677Q86XU0 584 aa14.36□□□□□ -0.11
USP49-201ENST00000373006 ATP11CQ8NB49 1132 aa14.36□□□□□ -0.11
USP49-201ENST00000373006 MZB1Q8WU39 189 aa14.36□□□□□ -0.11
USP49-201ENST00000373006 DCAKDQ8WVC6 231 aa14.36□□□□□ -0.11
USP49-201ENST00000373006 CPT1BQ92523 772 aa14.36□□□□□ -0.11
USP49-201ENST00000373006 GATA6Q92908 595 aa14.36□□□□□ -0.11
USP49-201ENST00000373006 TTC1Q99614 292 aa14.36□□□□□ -0.11
USP49-201ENST00000373006 ZNF184Q99676 751 aaPredicted RBP14.36□□□□□ -0.11
USP49-201ENST00000373006 GLIS2Q9BZE0 524 aaPredicted RBP14.36□□□□□ -0.11
USP49-201ENST00000373006 ZNF395Q9H8N7 513 aaPredicted RBP14.36□□□□□ -0.11
USP49-201ENST00000373006 APOBEC3GQ9HC16 384 aaKnown RBP14.36□□□□□ -0.11
USP49-201ENST00000373006 SHOC2Q9UQ13 582 aa14.36□□□□□ -0.11
USP49-201ENST00000373006 CHMP2BQ9UQN3 213 aa14.36□□□□□ -0.11
USP49-201ENST00000373006 SIPA1L1O43166 1804 aa14.36□□□□□ -0.11
USP49-201ENST00000373006 PTPRJQ12913 1337 aa14.36□□□□□ -0.11
USP49-201ENST00000373006 BAG2O95816 211 aa14.35□□□□□ -0.11
USP49-201ENST00000373006 GCLCP48506 637 aaPredicted RBP14.35□□□□□ -0.11
USP49-201ENST00000373006 SNRPFP62306 86 aaKnown RBP14.35□□□□□ -0.11
USP49-201ENST00000373006 DEUP1Q05D60 604 aa14.35□□□□□ -0.11
USP49-201ENST00000373006 RASA2Q15283 850 aa14.35□□□□□ -0.11
USP49-201ENST00000373006 ZNF394Q53GI3 561 aa14.35□□□□□ -0.11
USP49-201ENST00000373006 ANO5Q75V66 913 aa14.35□□□□□ -0.11
USP49-201ENST00000373006 SLC25A41Q8N5S1 370 aa14.35□□□□□ -0.11
USP49-201ENST00000373006 DRAXINQ8NBI3 349 aaPredicted RBP14.35□□□□□ -0.11
USP49-201ENST00000373006 CHURC1Q8WUH1 139 aa14.35□□□□□ -0.11
USP49-201ENST00000373006 OXNAD1Q96HP4 312 aaPredicted RBP14.35□□□□□ -0.11
USP49-201ENST00000373006 FBXL18Q96ME1 805 aa14.35□□□□□ -0.11
USP49-201ENST00000373006 PCMTD2Q9NV79 361 aa14.35□□□□□ -0.11
USP49-201ENST00000373006 IP6K2Q9UHH9 426 aa14.35□□□□□ -0.11
USP49-201ENST00000373006 CCPG1Q9ULG6 757 aa14.35□□□□□ -0.11
USP49-201ENST00000373006 MTO1Q9Y2Z2 717 aaKnown RBP14.35□□□□□ -0.11
USP49-201ENST00000373006 SCINQ9Y6U3 715 aa14.35□□□□□ -0.11
USP49-201ENST00000373006 hCG_1818297A0A087WSY0 165 aa14.35□□□□□ -0.11
USP49-201ENST00000373006 MAGEA13PA6NCF6 341 aa14.35□□□□□ -0.11
USP49-201ENST00000373006 KITP10721 976 aa14.35□□□□□ -0.11
USP49-201ENST00000373006 RARBP10826 455 aa14.35□□□□□ -0.11
USP49-201ENST00000373006 ACO1P21399 889 aaKnown RBP14.35□□□□□ -0.11
USP49-201ENST00000373006 GBP5Q96PP8 586 aa14.35□□□□□ -0.11
USP49-201ENST00000373006 MECRQ9BV79 373 aa14.35□□□□□ -0.11
USP49-201ENST00000373006 ZWILCHQ9H900 591 aa14.35□□□□□ -0.11
USP49-201ENST00000373006 TMX2Q9Y320 296 aa14.35□□□□□ -0.11
USP49-201ENST00000373006 RBBP6Q7Z6E9 1792 aaKnown RBP14.35□□□□□ -0.11
USP49-201ENST00000373006 TM9SF1O15321 606 aa14.34□□□□□ -0.11
USP49-201ENST00000373006 CCNE2O96020 404 aa14.34□□□□□ -0.11
USP49-201ENST00000373006 RXRBP28702 533 aa14.34□□□□□ -0.11
USP49-201ENST00000373006 GTF2H1P32780 548 aa14.34□□□□□ -0.11
USP49-201ENST00000373006 SP4Q02446 784 aa14.34□□□□□ -0.11
USP49-201ENST00000373006 ZRSR2Q15696 482 aaKnown RBP14.34□□□□□ -0.11
USP49-201ENST00000373006 TFDP3Q5H9I0 405 aa14.34□□□□□ -0.11
USP49-201ENST00000373006 MTHFD1LQ6UB35 978 aa14.34□□□□□ -0.11
USP49-201ENST00000373006 KRT27Q7Z3Y8 459 aa14.34□□□□□ -0.11
USP49-201ENST00000373006 IGDCC3Q8IVU1 814 aa14.34□□□□□ -0.11
USP49-201ENST00000373006 ACTL9Q8TC94 416 aa14.34□□□□□ -0.11
USP49-201ENST00000373006 ABTB1Q969K4 478 aaPredicted RBP14.34□□□□□ -0.11
USP49-201ENST00000373006 ACSS3Q9H6R3 686 aa14.34□□□□□ -0.11
USP49-201ENST00000373006 CHCHD3Q9NX63 227 aaKnown RBP14.34□□□□□ -0.11
USP49-201ENST00000373006 MARCOQ9UEW3 520 aaPredicted RBP14.34□□□□□ -0.11
USP49-201ENST00000373006 AGTPBP1Q9UPW5 1226 aa14.34□□□□□ -0.11
USP49-201ENST00000373006 DRG1Q9Y295 367 aaKnown RBP14.34□□□□□ -0.11
USP49-201ENST00000373006 USP1O94782 785 aa14.34□□□□□ -0.11
USP49-201ENST00000373006 OTUD4Q01804 1114 aaKnown RBP14.34□□□□□ -0.11
USP49-201ENST00000373006 FAAP100Q0VG06 881 aa14.34□□□□□ -0.11
USP49-201ENST00000373006 PRKD1Q15139 912 aaPredicted RBP14.34□□□□□ -0.11
USP49-201ENST00000373006 IZUMO2Q6UXV1 221 aa14.34□□□□□ -0.11
USP49-201ENST00000373006 TREML1Q86YW5 311 aa14.34□□□□□ -0.11
USP49-201ENST00000373006 CDAN1Q8IWY9 1227 aa14.34□□□□□ -0.11
USP49-201ENST00000373006 CEP170P1Q96L14 293 aa14.34□□□□□ -0.11
USP49-201ENST00000373006 TUBB6Q9BUF5 446 aa14.34□□□□□ -0.11
USP49-201ENST00000373006 PCDH9Q9HC56 1237 aa14.34□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms