RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 PLCB3Q01970 1234 aa21.92■■□□□ 1.1
CCDC88B-203ENST00000359902 LRRC14Q15048 493 aa21.92■■□□□ 1.1
CCDC88B-203ENST00000359902 CCDC142Q17RM4 750 aa21.92■■□□□ 1.1
CCDC88B-203ENST00000359902 KCNT1Q5JUK3 1230 aa21.92■■□□□ 1.1
CCDC88B-203ENST00000359902 CYP4F22Q6NT55 531 aa21.92■■□□□ 1.1
CCDC88B-203ENST00000359902 CCDC197Q8NCU1 140 aa21.92■■□□□ 1.1
CCDC88B-203ENST00000359902 METTL5Q9NRN9 209 aaKnown RBP21.92■■□□□ 1.1
CCDC88B-203ENST00000359902 EURLQ9NYK6 297 aa21.92■■□□□ 1.1
CCDC88B-203ENST00000359902 SAE1Q9UBE0 346 aaPredicted RBP21.92■■□□□ 1.1
CCDC88B-203ENST00000359902 TBK1Q9UHD2 729 aa21.92■■□□□ 1.1
CCDC88B-203ENST00000359902 VIMP08670 466 aaKnown RBP21.91■■□□□ 1.1
CCDC88B-203ENST00000359902 MPP2Q14168 576 aa21.91■■□□□ 1.1
CCDC88B-203ENST00000359902 TAZQ16635 292 aa21.91■■□□□ 1.1
CCDC88B-203ENST00000359902 SPRED3Q2MJR0 410 aa21.91■■□□□ 1.1
CCDC88B-203ENST00000359902 ZNF792Q3KQV3 632 aa21.91■■□□□ 1.1
CCDC88B-203ENST00000359902 MGARPQ8TDB4 240 aa21.91■■□□□ 1.1
CCDC88B-203ENST00000359902 SYNCQ9H7C4 482 aa21.91■■□□□ 1.1
CCDC88B-203ENST00000359902 CYP3A43Q9HB55 503 aa21.91■■□□□ 1.1
CCDC88B-203ENST00000359902 GOLGA6L7A0A1B0GV03 622 aa21.91■■□□□ 1.1
CCDC88B-203ENST00000359902 GH1P01241 217 aa21.91■■□□□ 1.1
CCDC88B-203ENST00000359902 KDELR1P24390 212 aa21.91■■□□□ 1.1
CCDC88B-203ENST00000359902 PSMC4P43686 418 aa21.91■■□□□ 1.1
CCDC88B-203ENST00000359902 MORF4L2Q15014 288 aa21.91■■□□□ 1.1
CCDC88B-203ENST00000359902 HADHQ16836 314 aaKnown RBP21.91■■□□□ 1.1
CCDC88B-203ENST00000359902 RNASEH2BQ5TBB1 312 aaKnown RBP21.91■■□□□ 1.1
CCDC88B-203ENST00000359902 FBXW10Q5XX13 1052 aa21.91■■□□□ 1.1
CCDC88B-203ENST00000359902 ILDR2Q71H61 639 aa21.91■■□□□ 1.1
CCDC88B-203ENST00000359902 AFG1LQ8WV93 481 aa21.91■■□□□ 1.1
CCDC88B-203ENST00000359902 CCT6BQ92526 530 aa21.91■■□□□ 1.1
CCDC88B-203ENST00000359902 PCDH9Q9HC56 1237 aa21.91■■□□□ 1.1
CCDC88B-203ENST00000359902 KCNK9Q9NPC2 374 aa21.91■■□□□ 1.1
CCDC88B-203ENST00000359902 WDR3Q9UNX4 943 aaKnown RBP eCLIP21.91■■□□□ 1.1
CCDC88B-203ENST00000359902 SGK1O00141 431 aa21.9■■□□□ 1.1
CCDC88B-203ENST00000359902 DNM1LO00429 736 aa21.9■■□□□ 1.1
CCDC88B-203ENST00000359902 BRAFP15056 766 aa21.9■■□□□ 1.1
CCDC88B-203ENST00000359902 GABRB2P47870 512 aa21.9■■□□□ 1.1
CCDC88B-203ENST00000359902 SNAPC2Q13487 334 aa21.9■■□□□ 1.1
CCDC88B-203ENST00000359902 PPTC7Q8NI37 304 aa21.9■■□□□ 1.1
CCDC88B-203ENST00000359902 MCRS1Q96EZ8 462 aa21.9■■□□□ 1.1
CCDC88B-203ENST00000359902 HPDLQ96IR7 371 aa21.9■■□□□ 1.1
CCDC88B-203ENST00000359902 CFAP57Q96MR6 1250 aa21.9■■□□□ 1.1
CCDC88B-203ENST00000359902 GPD2P43304 727 aa21.9■■□□□ 1.1
CCDC88B-203ENST00000359902 DYNLT1P63172 113 aa21.9■■□□□ 1.1
CCDC88B-203ENST00000359902 ANKRD20A8PQ5CZ79 823 aa21.9■■□□□ 1.1
CCDC88B-203ENST00000359902 USP50Q70EL3 339 aaPredicted RBP21.9■■□□□ 1.1
CCDC88B-203ENST00000359902 CCDC13Q8IYE1 715 aa21.9■■□□□ 1.1
CCDC88B-203ENST00000359902 ACTL9Q8TC94 416 aa21.9■■□□□ 1.1
CCDC88B-203ENST00000359902 ZC3H15Q8WU90 426 aaKnown RBP21.9■■□□□ 1.1
CCDC88B-203ENST00000359902 DYDC1Q8WWB3 177 aa21.9■■□□□ 1.1
CCDC88B-203ENST00000359902 ELAC2Q9BQ52 826 aaKnown RBP21.9■■□□□ 1.1
CCDC88B-203ENST00000359902 AGAP1Q9UPQ3 857 aa21.9■■□□□ 1.1
CCDC88B-203ENST00000359902 CST8O60676 142 aa21.89■■□□□ 1.1
CCDC88B-203ENST00000359902 IFNB1P01574 187 aa21.89■■□□□ 1.1
CCDC88B-203ENST00000359902 ZNF286BP0CG31 522 aa21.89■■□□□ 1.1
CCDC88B-203ENST00000359902 OTUD4Q01804 1114 aaKnown RBP21.89■■□□□ 1.1
CCDC88B-203ENST00000359902 TMEM132DQ14C87 1099 aa21.89■■□□□ 1.1
CCDC88B-203ENST00000359902 FASTKD3Q14CZ7 662 aaKnown RBP21.89■■□□□ 1.1
CCDC88B-203ENST00000359902 LACTB2Q53H82 288 aaPredicted RBP21.89■■□□□ 1.1
CCDC88B-203ENST00000359902 MAP1SQ66K74 1059 aaPredicted RBP21.89■■□□□ 1.1
CCDC88B-203ENST00000359902 BBS12Q6ZW61 710 aa21.89■■□□□ 1.1
CCDC88B-203ENST00000359902 CNPY4Q8N129 248 aa21.89■■□□□ 1.1
CCDC88B-203ENST00000359902 GPRC5AQ8NFJ5 357 aa21.89■■□□□ 1.1
CCDC88B-203ENST00000359902 HEXIM2Q96MH2 286 aaKnown RBP21.89■■□□□ 1.1
CCDC88B-203ENST00000359902 C16orf70Q9BSU1 422 aa21.89■■□□□ 1.1
CCDC88B-203ENST00000359902 ACTR5Q9H9F9 607 aaPredicted RBP21.89■■□□□ 1.1
CCDC88B-203ENST00000359902 DYNC1LI1Q9Y6G9 523 aaKnown RBP21.89■■□□□ 1.1
CCDC88B-203ENST00000359902 M0QYV0 167 aa21.89■■□□□ 1.09
CCDC88B-203ENST00000359902 HMGCRP04035 888 aa21.89■■□□□ 1.09
CCDC88B-203ENST00000359902 CD48P09326 243 aa21.89■■□□□ 1.09
CCDC88B-203ENST00000359902 VDRP11473 427 aa21.89■■□□□ 1.09
CCDC88B-203ENST00000359902 P4HA1P13674 534 aa21.89■■□□□ 1.09
CCDC88B-203ENST00000359902 ADORA2AP29274 412 aa21.89■■□□□ 1.09
CCDC88B-203ENST00000359902 MYO1EQ12965 1108 aa21.89■■□□□ 1.09
CCDC88B-203ENST00000359902 LDLRAD1Q5T700 205 aa21.89■■□□□ 1.09
CCDC88B-203ENST00000359902 MTHFD1LQ6UB35 978 aa21.89■■□□□ 1.09
CCDC88B-203ENST00000359902 ANKRD42Q8N9B4 389 aa21.89■■□□□ 1.09
CCDC88B-203ENST00000359902 MAML1Q92585 1016 aa21.89■■□□□ 1.09
CCDC88B-203ENST00000359902 P3H4Q92791 437 aa21.89■■□□□ 1.09
CCDC88B-203ENST00000359902 TTC25Q96NG3 672 aa21.89■■□□□ 1.09
CCDC88B-203ENST00000359902 KDM4CQ9H3R0 1056 aa21.89■■□□□ 1.09
CCDC88B-203ENST00000359902 VTA1Q9NP79 307 aa21.89■■□□□ 1.09
CCDC88B-203ENST00000359902 ZSWIM8A7E2V4 1837 aa21.88■■□□□ 1.09
CCDC88B-203ENST00000359902 RBM47A0AV96 593 aaKnown RBP21.88■■□□□ 1.09
CCDC88B-203ENST00000359902 H0YHG0 523 aa21.88■■□□□ 1.09
CCDC88B-203ENST00000359902 ALOX15BO15296 676 aa21.88■■□□□ 1.09
CCDC88B-203ENST00000359902 ITIH4Q14624 930 aa21.88■■□□□ 1.09
CCDC88B-203ENST00000359902 HP1BP3Q5SSJ5 553 aaPredicted RBP21.88■■□□□ 1.09
CCDC88B-203ENST00000359902 SRRM1Q8IYB3 904 aaKnown RBP21.88■■□□□ 1.09
CCDC88B-203ENST00000359902 ANKS4BQ8N8V4 417 aa21.88■■□□□ 1.09
CCDC88B-203ENST00000359902 CMASQ8NFW8 434 aaPredicted RBP21.88■■□□□ 1.09
CCDC88B-203ENST00000359902 C10orf88Q9H8K7 445 aa21.88■■□□□ 1.09
CCDC88B-203ENST00000359902 SAMD15Q9P1V8 674 aa21.88■■□□□ 1.09
CCDC88B-203ENST00000359902 PCSK1NQ9UHG2 260 aa21.88■■□□□ 1.09
CCDC88B-203ENST00000359902 SHOC2Q9UQ13 582 aa21.88■■□□□ 1.09
CCDC88B-203ENST00000359902 CCT8L1PA6NM43 557 aa21.88■■□□□ 1.09
CCDC88B-203ENST00000359902 GCAP28676 217 aa21.88■■□□□ 1.09
CCDC88B-203ENST00000359902 MIPP30301 263 aa21.88■■□□□ 1.09
CCDC88B-203ENST00000359902 ADCYAP1R1P41586 468 aa21.88■■□□□ 1.09
CCDC88B-203ENST00000359902 SF3A3Q12874 501 aaKnown RBP eCLIP21.88■■□□□ 1.09
CCDC88B-203ENST00000359902 KYAT1Q16773 422 aa21.88■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms