RNA–Protein interactions for RNA: ENST00000356922.5

LIG4-201, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,096 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-201ENST00000356922 SOX5P35711 763 aa4.28□□□□□ -1.72
LIG4-201ENST00000356922 LTBRP36941 435 aa4.28□□□□□ -1.72
LIG4-201ENST00000356922 GLUD2P49448 558 aa4.28□□□□□ -1.72
LIG4-201ENST00000356922 CLCN4P51793 760 aa4.28□□□□□ -1.72
LIG4-201ENST00000356922 FMO1Q01740 532 aa4.28□□□□□ -1.72
LIG4-201ENST00000356922 TAF5Q15542 800 aa4.28□□□□□ -1.72
LIG4-201ENST00000356922 CCDC85BQ15834 202 aaPredicted RBP4.28□□□□□ -1.72
LIG4-201ENST00000356922 PKDCCQ504Y2 493 aa4.28□□□□□ -1.72
LIG4-201ENST00000356922 KIAA1841Q6NSI8 718 aa4.28□□□□□ -1.72
LIG4-201ENST00000356922 PMF1Q6P1K2 205 aa4.28□□□□□ -1.72
LIG4-201ENST00000356922 PDZRN4Q6ZMN7 1036 aaPredicted RBP4.28□□□□□ -1.72
LIG4-201ENST00000356922 SLC30A5Q8TAD4 765 aa4.28□□□□□ -1.72
LIG4-201ENST00000356922 SLC22A17Q8WUG5 538 aa4.28□□□□□ -1.72
LIG4-201ENST00000356922 MYLIPQ8WY64 445 aa4.28□□□□□ -1.72
LIG4-201ENST00000356922 TAF4BQ92750 862 aa4.28□□□□□ -1.72
LIG4-201ENST00000356922 SYT15Q9BQS2 421 aa4.28□□□□□ -1.72
LIG4-201ENST00000356922 ACBD6Q9BR61 282 aa4.28□□□□□ -1.72
LIG4-201ENST00000356922 APOL5Q9BWW9 433 aa4.28□□□□□ -1.72
LIG4-201ENST00000356922 IGFLR1Q9H665 355 aa4.28□□□□□ -1.72
LIG4-201ENST00000356922 RXFP1Q9HBX9 757 aa4.28□□□□□ -1.72
LIG4-201ENST00000356922 AAASQ9NRG9 546 aa4.28□□□□□ -1.72
LIG4-201ENST00000356922 HCFC2Q9Y5Z7 792 aa4.28□□□□□ -1.72
LIG4-201ENST00000356922 IRAK3Q9Y616 596 aa4.28□□□□□ -1.72
LIG4-201ENST00000356922 ITIH6Q6UXX5 1313 aa4.28□□□□□ -1.72
LIG4-201ENST00000356922 NOTCH4Q99466 2003 aa4.28□□□□□ -1.72
LIG4-201ENST00000356922 A0A087X0T9 212 aa4.28□□□□□ -1.72
LIG4-201ENST00000356922 MTMR11A4FU01 709 aa4.28□□□□□ -1.72
LIG4-201ENST00000356922 HHLA1C9JL84 531 aa4.28□□□□□ -1.72
LIG4-201ENST00000356922 O00370 1275 aa4.28□□□□□ -1.72
LIG4-201ENST00000356922 DDX3XO00571 662 aaKnown RBP eCLIP4.28□□□□□ -1.72
LIG4-201ENST00000356922 SYN3O14994 580 aa4.28□□□□□ -1.72
LIG4-201ENST00000356922 MFAP3LO75121 409 aa4.28□□□□□ -1.72
LIG4-201ENST00000356922 GJB6O95452 261 aa4.28□□□□□ -1.72
LIG4-201ENST00000356922 FAM228BP0C875 321 aa4.28□□□□□ -1.72
LIG4-201ENST00000356922 TYMPP19971 482 aa4.28□□□□□ -1.72
LIG4-201ENST00000356922 ADORA2BP29275 332 aa4.28□□□□□ -1.72
LIG4-201ENST00000356922 NRIP1P48552 1158 aa4.28□□□□□ -1.72
LIG4-201ENST00000356922 MFAP3P55082 362 aa4.28□□□□□ -1.72
LIG4-201ENST00000356922 KRT17Q04695 432 aa4.28□□□□□ -1.72
LIG4-201ENST00000356922 HYAL1Q12794 435 aa4.28□□□□□ -1.72
LIG4-201ENST00000356922 CETN1Q12798 172 aa4.28□□□□□ -1.72
LIG4-201ENST00000356922 RAB30Q15771 203 aa4.28□□□□□ -1.72
LIG4-201ENST00000356922 ASTE1Q2TB18 679 aaPredicted RBP4.28□□□□□ -1.72
LIG4-201ENST00000356922 TCEAL5Q5H9L2 206 aa4.28□□□□□ -1.72
LIG4-201ENST00000356922 FIGNQ5HY92 759 aa4.28□□□□□ -1.72
LIG4-201ENST00000356922 INTS6LQ5JSJ4 861 aaKnown RBP4.28□□□□□ -1.72
LIG4-201ENST00000356922 FAM43BQ6ZT52 329 aaPredicted RBP4.28□□□□□ -1.72
LIG4-201ENST00000356922 ZNF461Q8TAF7 563 aa4.28□□□□□ -1.72
LIG4-201ENST00000356922 MYCBPAPQ8TBZ2 947 aa4.28□□□□□ -1.72
LIG4-201ENST00000356922 CLEC4CQ8WTT0 213 aa4.28□□□□□ -1.72
LIG4-201ENST00000356922 CPA5Q8WXQ8 436 aa4.28□□□□□ -1.72
LIG4-201ENST00000356922 MYLPFQ96A32 169 aa4.28□□□□□ -1.72
LIG4-201ENST00000356922 DNAJC7Q99615 494 aa4.28□□□□□ -1.72
LIG4-201ENST00000356922 CDX2Q99626 313 aaPredicted RBP4.28□□□□□ -1.72
LIG4-201ENST00000356922 C11orf84Q9BUA3 381 aaPredicted RBP4.28□□□□□ -1.72
LIG4-201ENST00000356922 HERC2P3Q9BVR0 1158 aa4.28□□□□□ -1.72
LIG4-201ENST00000356922 PLVAPQ9BX97 442 aa4.28□□□□□ -1.72
LIG4-201ENST00000356922 NT5C1AQ9BXI3 368 aa4.28□□□□□ -1.72
LIG4-201ENST00000356922 ADAM33Q9BZ11 813 aa4.28□□□□□ -1.72
LIG4-201ENST00000356922 IMPG2Q9BZV3 1241 aa4.28□□□□□ -1.72
LIG4-201ENST00000356922 PRDM6Q9NQX0 595 aa4.28□□□□□ -1.72
LIG4-201ENST00000356922 ENTPD7Q9NQZ7 604 aa4.28□□□□□ -1.72
LIG4-201ENST00000356922 MRPL17Q9NRX2 175 aaKnown RBP4.28□□□□□ -1.72
LIG4-201ENST00000356922 ABHD10Q9NUJ1 306 aa4.28□□□□□ -1.72
LIG4-201ENST00000356922 HCFC1R1Q9NWW0 138 aa4.28□□□□□ -1.72
LIG4-201ENST00000356922 AIPL1Q9NZN9 384 aa4.28□□□□□ -1.72
LIG4-201ENST00000356922 ADAMTS1Q9UHI8 967 aa4.28□□□□□ -1.72
LIG4-201ENST00000356922 COL4A4P53420 1690 aaPredicted RBP4.28□□□□□ -1.72
LIG4-201ENST00000356922 NCOR1O75376 2440 aa4.28□□□□□ -1.72
LIG4-201ENST00000356922 RCCD1A6NED2 376 aa4.28□□□□□ -1.72
LIG4-201ENST00000356922 SOWAHDA6NJG2 315 aa4.28□□□□□ -1.72
LIG4-201ENST00000356922 F8VP50 259 aa4.28□□□□□ -1.72
LIG4-201ENST00000356922 TRAPPC3O43617 180 aa4.28□□□□□ -1.72
LIG4-201ENST00000356922 CLASP2O75122 1294 aaKnown RBP4.28□□□□□ -1.72
LIG4-201ENST00000356922 RB1P06400 928 aa4.28□□□□□ -1.72
LIG4-201ENST00000356922 GPD2P43304 727 aa4.28□□□□□ -1.72
LIG4-201ENST00000356922 ZBED6P86452 979 aa4.28□□□□□ -1.72
LIG4-201ENST00000356922 CYP27A1Q02318 531 aa4.28□□□□□ -1.72
LIG4-201ENST00000356922 GPR17Q13304 367 aa4.28□□□□□ -1.72
LIG4-201ENST00000356922 RAD9BQ6WBX8 426 aa4.28□□□□□ -1.72
LIG4-201ENST00000356922 EP400NLQ6ZTU2 488 aa4.28□□□□□ -1.72
LIG4-201ENST00000356922 CLEC20AQ6ZU45 233 aa4.28□□□□□ -1.72
LIG4-201ENST00000356922 DRC7Q8IY82 874 aa4.28□□□□□ -1.72
LIG4-201ENST00000356922 DEFB123Q8N688 67 aa4.28□□□□□ -1.72
LIG4-201ENST00000356922 JAKMIP2Q96AA8 810 aa4.28□□□□□ -1.72
LIG4-201ENST00000356922 PACSIN1Q9BY11 444 aa4.28□□□□□ -1.72
LIG4-201ENST00000356922 SNX25Q9H3E2 840 aa4.28□□□□□ -1.72
LIG4-201ENST00000356922 CYP3A43Q9HB55 503 aa4.28□□□□□ -1.72
LIG4-201ENST00000356922 SPTLC3Q9NUV7 552 aa4.28□□□□□ -1.72
LIG4-201ENST00000356922 ABI2Q9NYB9 513 aaPredicted RBP4.28□□□□□ -1.72
LIG4-201ENST00000356922 PUF60Q9UHX1 559 aaKnown RBP4.28□□□□□ -1.72
LIG4-201ENST00000356922 TSPAN16Q9UKR8 245 aa4.28□□□□□ -1.72
LIG4-201ENST00000356922 LUC7L2Q9Y383 392 aaKnown RBP4.28□□□□□ -1.72
LIG4-201ENST00000356922 A0A1W2PQJ5 194 aa4.27□□□□□ -1.73
LIG4-201ENST00000356922 TMCO5BA8MYB1 307 aa4.27□□□□□ -1.73
LIG4-201ENST00000356922 MICAL2O94851 1124 aa4.27□□□□□ -1.73
LIG4-201ENST00000356922 ATF2P15336 505 aa4.27□□□□□ -1.73
LIG4-201ENST00000356922 CD19P15391 556 aa4.27□□□□□ -1.73
LIG4-201ENST00000356922 IGFBP4P22692 258 aa4.27□□□□□ -1.73
LIG4-201ENST00000356922 GNA15P30679 374 aa4.27□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms