RNA–Protein interactions for RNA: ENST00000354497.4

RTN3-204, Transcript of reticulon 3, humanhuman

TSL 2 BASIC

Gene RTN3, Length 1,407 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-204ENST00000354497 CLDN3O15551 220 aa12.1□□□□□ -0.47
RTN3-204ENST00000354497 XPOTO43592 962 aaKnown RBP12.1□□□□□ -0.47
RTN3-204ENST00000354497 TOM1L1O75674 476 aa12.1□□□□□ -0.47
RTN3-204ENST00000354497 CFIP05156 583 aa12.1□□□□□ -0.47
RTN3-204ENST00000354497 FDPSP14324 419 aaKnown RBP12.1□□□□□ -0.47
RTN3-204ENST00000354497 NLRP12P59046 1061 aa12.1□□□□□ -0.47
RTN3-204ENST00000354497 MTF1Q14872 753 aa12.1□□□□□ -0.47
RTN3-204ENST00000354497 COL28A1Q2UY09 1125 aa12.1□□□□□ -0.47
RTN3-204ENST00000354497 LPCAT2Q7L5N7 544 aa12.1□□□□□ -0.47
RTN3-204ENST00000354497 PROSER1Q86XN7 944 aa12.1□□□□□ -0.47
RTN3-204ENST00000354497 TMEFF1Q8IYR6 380 aa12.1□□□□□ -0.47
RTN3-204ENST00000354497 CCDC33Q8N5R6 958 aa12.1□□□□□ -0.47
RTN3-204ENST00000354497 NECAB1Q8N987 351 aa12.1□□□□□ -0.47
RTN3-204ENST00000354497 PDLIM2Q96JY6 352 aa12.1□□□□□ -0.47
RTN3-204ENST00000354497 SPACA7Q96KW9 195 aa12.1□□□□□ -0.47
RTN3-204ENST00000354497 TM6SF1Q9BZW5 370 aa12.1□□□□□ -0.47
RTN3-204ENST00000354497 FSCN3Q9NQT6 498 aa12.1□□□□□ -0.47
RTN3-204ENST00000354497 ARHGAP28Q9P2N2 729 aa12.1□□□□□ -0.47
RTN3-204ENST00000354497 LRWD1Q9UFC0 647 aa12.1□□□□□ -0.47
RTN3-204ENST00000354497 EVLQ9UI08 416 aaPredicted RBP12.1□□□□□ -0.47
RTN3-204ENST00000354497 ZMYM5Q9UJ78 669 aa12.1□□□□□ -0.47
RTN3-204ENST00000354497 TBX20Q9UMR3 447 aa12.1□□□□□ -0.47
RTN3-204ENST00000354497 PKD1L2Q7Z442 2459 aa12.09□□□□□ -0.47
RTN3-204ENST00000354497 WDFY3Q8IZQ1 3526 aa12.09□□□□□ -0.47
RTN3-204ENST00000354497 LACTBL1A8MY62 500 aa12.09□□□□□ -0.47
RTN3-204ENST00000354497 CLTAP09496 248 aa12.09□□□□□ -0.47
RTN3-204ENST00000354497 CYP3A5P20815 502 aa12.09□□□□□ -0.47
RTN3-204ENST00000354497 DDX6P26196 483 aaKnown RBP eCLIP12.09□□□□□ -0.47
RTN3-204ENST00000354497 TNFSF9P41273 254 aa12.09□□□□□ -0.47
RTN3-204ENST00000354497 AARSP49588 968 aaKnown RBP eCLIP12.09□□□□□ -0.47
RTN3-204ENST00000354497 GUCY1B3Q02153 619 aa12.09□□□□□ -0.47
RTN3-204ENST00000354497 RAD51AP2Q09MP3 1159 aa12.09□□□□□ -0.47
RTN3-204ENST00000354497 METTL23Q86XA0 190 aa12.09□□□□□ -0.47
RTN3-204ENST00000354497 DAW1Q8N136 415 aa12.09□□□□□ -0.47
RTN3-204ENST00000354497 MDGA1Q8NFP4 955 aa12.09□□□□□ -0.47
RTN3-204ENST00000354497 SNX29Q8TEQ0 813 aa12.09□□□□□ -0.47
RTN3-204ENST00000354497 RLN3Q8WXF3 142 aa12.09□□□□□ -0.47
RTN3-204ENST00000354497 ATP2A3Q93084 1043 aa12.09□□□□□ -0.47
RTN3-204ENST00000354497 CNOT6LQ96LI5 555 aaKnown RBP12.09□□□□□ -0.47
RTN3-204ENST00000354497 RUSC1Q9BVN2 902 aa12.09□□□□□ -0.47
RTN3-204ENST00000354497 ZCWPW1Q9H0M4 648 aa12.09□□□□□ -0.47
RTN3-204ENST00000354497 PLEKHA5Q9HAU0 1116 aa12.09□□□□□ -0.47
RTN3-204ENST00000354497 HSFX1Q9UBD0 423 aa12.09□□□□□ -0.47
RTN3-204ENST00000354497 GPSM3Q9Y4H4 160 aa12.09□□□□□ -0.47
RTN3-204ENST00000354497 LAMA1P25391 3075 aa12.08□□□□□ -0.48
RTN3-204ENST00000354497 FASNP49327 2511 aaKnown RBP12.08□□□□□ -0.48
RTN3-204ENST00000354497 H0Y626 953 aa12.08□□□□□ -0.48
RTN3-204ENST00000354497 ALDH1A2O94788 518 aa12.08□□□□□ -0.48
RTN3-204ENST00000354497 TRIM16O95361 564 aa12.08□□□□□ -0.48
RTN3-204ENST00000354497 F11P03951 625 aa12.08□□□□□ -0.48
RTN3-204ENST00000354497 HAPLN1P10915 354 aaPredicted RBP12.08□□□□□ -0.48
RTN3-204ENST00000354497 MUTP22033 750 aa12.08□□□□□ -0.48
RTN3-204ENST00000354497 GPR15P49685 360 aa12.08□□□□□ -0.48
RTN3-204ENST00000354497 SCAPQ12770 1279 aa12.08□□□□□ -0.48
RTN3-204ENST00000354497 NR1H3Q13133 447 aa12.08□□□□□ -0.48
RTN3-204ENST00000354497 SDHAF4Q5VUM1 108 aa12.08□□□□□ -0.48
RTN3-204ENST00000354497 TMEM150AQ86TG1 271 aa12.08□□□□□ -0.48
RTN3-204ENST00000354497 THEM5Q8N1Q8 247 aa12.08□□□□□ -0.48
RTN3-204ENST00000354497 PGBD3Q8N328 593 aa12.08□□□□□ -0.48
RTN3-204ENST00000354497 PDCL2Q8N4E4 241 aa12.08□□□□□ -0.48
RTN3-204ENST00000354497 CCDC26Q8TAB7 109 aa12.08□□□□□ -0.48
RTN3-204ENST00000354497 USP33Q8TEY7 942 aa12.08□□□□□ -0.48
RTN3-204ENST00000354497 OSCP1Q8WVF1 389 aa12.08□□□□□ -0.48
RTN3-204ENST00000354497 TIGD1Q96MW7 591 aa12.08□□□□□ -0.48
RTN3-204ENST00000354497 CALCOCO1Q9P1Z2 691 aa12.08□□□□□ -0.48
RTN3-204ENST00000354497 MBD1Q9UIS9 605 aaPredicted RBP12.08□□□□□ -0.48
RTN3-204ENST00000354497 DNM3Q9UQ16 869 aa12.08□□□□□ -0.48
RTN3-204ENST00000354497 R3HCC1Q9Y3T6 440 aaKnown RBP12.08□□□□□ -0.48
RTN3-204ENST00000354497 ATG2BQ96BY7 2078 aa12.07□□□□□ -0.48
RTN3-204ENST00000354497 CITO14578 2027 aa12.07□□□□□ -0.48
RTN3-204ENST00000354497 TTC26A0AVF1 554 aa12.07□□□□□ -0.48
RTN3-204ENST00000354497 VGLL3A8MV65 326 aa12.07□□□□□ -0.48
RTN3-204ENST00000354497 PRPF40AO75400 957 aaKnown RBP12.07□□□□□ -0.48
RTN3-204ENST00000354497 CKMP06732 381 aa12.07□□□□□ -0.48
RTN3-204ENST00000354497 PTGER3P43115 390 aa12.07□□□□□ -0.48
RTN3-204ENST00000354497 LILRA4P59901 499 aa12.07□□□□□ -0.48
RTN3-204ENST00000354497 MCL1Q07820 350 aa12.07□□□□□ -0.48
RTN3-204ENST00000354497 SAFBQ15424 915 aaKnown RBP eCLIP12.07□□□□□ -0.48
RTN3-204ENST00000354497 ZRSR1Q15695 479 aaKnown RBP12.07□□□□□ -0.48
RTN3-204ENST00000354497 LYSMD4Q5XG99 296 aa12.07□□□□□ -0.48
RTN3-204ENST00000354497 LMBRD2Q68DH5 695 aaPredicted RBP12.07□□□□□ -0.48
RTN3-204ENST00000354497 PIP4P1Q86T03 277 aa12.07□□□□□ -0.48
RTN3-204ENST00000354497 MON1AQ86VX9 555 aa12.07□□□□□ -0.48
RTN3-204ENST00000354497 RASSF3Q86WH2 238 aa12.07□□□□□ -0.48
RTN3-204ENST00000354497 SYT12Q8IV01 421 aa12.07□□□□□ -0.48
RTN3-204ENST00000354497 FRMD1Q8N878 549 aa12.07□□□□□ -0.48
RTN3-204ENST00000354497 SPPL2BQ8TCT7 592 aa12.07□□□□□ -0.48
RTN3-204ENST00000354497 HNRNPLLQ8WVV9 542 aaKnown RBP12.07□□□□□ -0.48
RTN3-204ENST00000354497 PYM1Q9BRP8 204 aaKnown RBP12.07□□□□□ -0.48
RTN3-204ENST00000354497 PI4K2AQ9BTU6 479 aa12.07□□□□□ -0.48
RTN3-204ENST00000354497 RPF1Q9H9Y2 349 aaKnown RBP12.07□□□□□ -0.48
RTN3-204ENST00000354497 TMEM74BQ9NUR3 256 aa12.07□□□□□ -0.48
RTN3-204ENST00000354497 MMP17Q9ULZ9 603 aa12.07□□□□□ -0.48
RTN3-204ENST00000354497 GTF3C5Q9Y5Q8 519 aaPredicted RBP12.07□□□□□ -0.48
RTN3-204ENST00000354497 ANTXRLA6NF34 631 aa12.06□□□□□ -0.48
RTN3-204ENST00000354497 CYB561D2O14569 222 aa12.06□□□□□ -0.48
RTN3-204ENST00000354497 TNFRSF10BO14763 440 aa12.06□□□□□ -0.48
RTN3-204ENST00000354497 JAK2O60674 1132 aa12.06□□□□□ -0.48
RTN3-204ENST00000354497 OPHN1O60890 802 aa12.06□□□□□ -0.48
RTN3-204ENST00000354497 USP17L7P0C7H9 530 aa12.06□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms