RNA–Protein interactions for RNA: ENST00000338045.7

LIMS1-202, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,876 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-202ENST00000338045 ELAC1Q9H777 363 aaKnown RBP16.34■□□□□ 0.21
LIMS1-202ENST00000338045 HESX1Q9UBX0 185 aa16.34■□□□□ 0.21
LIMS1-202ENST00000338045 INPP5FQ9Y2H2 1132 aa16.34■□□□□ 0.21
LIMS1-202ENST00000338045 TDRD15B5MCY1 1934 aaKnown RBP16.34■□□□□ 0.21
LIMS1-202ENST00000338045 LHX1P48742 406 aa16.33■□□□□ 0.21
LIMS1-202ENST00000338045 ZNF252P-AS1Q0IIN9 211 aa16.33■□□□□ 0.21
LIMS1-202ENST00000338045 CLLU1OSQ5K130 101 aa16.33■□□□□ 0.21
LIMS1-202ENST00000338045 FBXO38Q6PIJ6 1188 aa16.33■□□□□ 0.21
LIMS1-202ENST00000338045 FBXO46Q6PJ61 603 aaPredicted RBP16.33■□□□□ 0.21
LIMS1-202ENST00000338045 NIPA2Q8N8Q9 360 aa16.33■□□□□ 0.21
LIMS1-202ENST00000338045 ANKRD52Q8NB46 1076 aa16.33■□□□□ 0.21
LIMS1-202ENST00000338045 B3GALNT2Q8NCR0 500 aa16.33■□□□□ 0.21
LIMS1-202ENST00000338045 DBF4BQ8NFT6 615 aa16.33■□□□□ 0.21
LIMS1-202ENST00000338045 SPATA18Q8TC71 538 aa16.33■□□□□ 0.21
LIMS1-202ENST00000338045 FNIP1Q8TF40 1166 aa16.33■□□□□ 0.21
LIMS1-202ENST00000338045 SLC4A5Q9BY07 1137 aa16.33■□□□□ 0.21
LIMS1-202ENST00000338045 TMEM161AQ9NX61 479 aa16.33■□□□□ 0.21
LIMS1-202ENST00000338045 RAB21Q9UL25 225 aa16.33■□□□□ 0.21
LIMS1-202ENST00000338045 TARSL2A2RTX5 802 aaKnown RBP16.33■□□□□ 0.2
LIMS1-202ENST00000338045 TUBBP07437 444 aa16.33■□□□□ 0.2
LIMS1-202ENST00000338045 RHOXF2BP0C7M4 288 aa16.33■□□□□ 0.2
LIMS1-202ENST00000338045 RWDD2BP57060 319 aa16.33■□□□□ 0.2
LIMS1-202ENST00000338045 RNASE9P60153 205 aaKnown RBP16.33■□□□□ 0.2
LIMS1-202ENST00000338045 OGDHQ02218 1023 aa16.33■□□□□ 0.2
LIMS1-202ENST00000338045 DSC1Q08554 894 aa16.33■□□□□ 0.2
LIMS1-202ENST00000338045 CLUL1Q15846 466 aa16.33■□□□□ 0.2
LIMS1-202ENST00000338045 TIGD5Q53EQ6 642 aa16.33■□□□□ 0.2
LIMS1-202ENST00000338045 DCUN1D2Q6PH85 259 aa16.33■□□□□ 0.2
LIMS1-202ENST00000338045 TMEM110Q86TL2 294 aa16.33■□□□□ 0.2
LIMS1-202ENST00000338045 APBB2Q92870 758 aa16.33■□□□□ 0.2
LIMS1-202ENST00000338045 ARMC5Q96C12 935 aa16.33■□□□□ 0.2
LIMS1-202ENST00000338045 LPIN3Q9BQK8 851 aa16.33■□□□□ 0.2
LIMS1-202ENST00000338045 RHOXF2Q9BQY4 288 aa16.33■□□□□ 0.2
LIMS1-202ENST00000338045 SYNCQ9H7C4 482 aa16.33■□□□□ 0.2
LIMS1-202ENST00000338045 ENPP3O14638 875 aa16.32■□□□□ 0.2
LIMS1-202ENST00000338045 B3GAT3O94766 335 aa16.32■□□□□ 0.2
LIMS1-202ENST00000338045 PARNO95453 639 aaKnown RBP16.32■□□□□ 0.2
LIMS1-202ENST00000338045 CYP11A1P05108 521 aa16.32■□□□□ 0.2
LIMS1-202ENST00000338045 KRT3P12035 628 aa16.32■□□□□ 0.2
LIMS1-202ENST00000338045 CCDC130P13994 396 aa16.32■□□□□ 0.2
LIMS1-202ENST00000338045 IBSPP21815 317 aaPredicted RBP16.32■□□□□ 0.2
LIMS1-202ENST00000338045 RPL34P49207 117 aaKnown RBP16.32■□□□□ 0.2
LIMS1-202ENST00000338045 ATN1P54259 1190 aaPredicted RBP16.32■□□□□ 0.2
LIMS1-202ENST00000338045 BCAT1P54687 386 aa16.32■□□□□ 0.2
LIMS1-202ENST00000338045 C1QTNF8P60827 252 aa16.32■□□□□ 0.2
LIMS1-202ENST00000338045 FAAP100Q0VG06 881 aa16.32■□□□□ 0.2
LIMS1-202ENST00000338045 PIGHQ14442 188 aaPredicted RBP16.32■□□□□ 0.2
LIMS1-202ENST00000338045 NOMO2Q5JPE7 1267 aa16.32■□□□□ 0.2
LIMS1-202ENST00000338045 PMF1Q6P1K2 205 aa16.32■□□□□ 0.2
LIMS1-202ENST00000338045 DSTYKQ6XUX3 929 aa16.32■□□□□ 0.2
LIMS1-202ENST00000338045 SEPT8Q92599 483 aa16.32■□□□□ 0.2
LIMS1-202ENST00000338045 PNKPQ96T60 521 aa16.32■□□□□ 0.2
LIMS1-202ENST00000338045 NAP1L3Q99457 506 aaPredicted RBP16.32■□□□□ 0.2
LIMS1-202ENST00000338045 HNRNPABQ99729 332 aaKnown RBP16.32■□□□□ 0.2
LIMS1-202ENST00000338045 TANC1Q9C0D5 1861 aa16.31■□□□□ 0.2
LIMS1-202ENST00000338045 E5RJQ4 531 aa16.31■□□□□ 0.2
LIMS1-202ENST00000338045 M0QZQ0 153 aa16.31■□□□□ 0.2
LIMS1-202ENST00000338045 TULP2O00295 520 aa16.31■□□□□ 0.2
LIMS1-202ENST00000338045 PSTPIP1O43586 416 aa16.31■□□□□ 0.2
LIMS1-202ENST00000338045 FGGP02679 453 aa16.31■□□□□ 0.2
LIMS1-202ENST00000338045 CXCL10P02778 98 aa16.31■□□□□ 0.2
LIMS1-202ENST00000338045 PYGMP11217 842 aa16.31■□□□□ 0.2
LIMS1-202ENST00000338045 PTPN1P18031 435 aaKnown RBP16.31■□□□□ 0.2
LIMS1-202ENST00000338045 RFC1P35251 1148 aaPredicted RBP16.31■□□□□ 0.2
LIMS1-202ENST00000338045 BST2Q10589 180 aaKnown RBP16.31■□□□□ 0.2
LIMS1-202ENST00000338045 ZNF211Q13398 564 aaPredicted RBP16.31■□□□□ 0.2
LIMS1-202ENST00000338045 GLE1Q53GS7 698 aaKnown RBP16.31■□□□□ 0.2
LIMS1-202ENST00000338045 WDR93Q6P2C0 686 aa16.31■□□□□ 0.2
LIMS1-202ENST00000338045 DCLRE1AQ6PJP8 1040 aa16.31■□□□□ 0.2
LIMS1-202ENST00000338045 HIPK3Q9H422 1215 aa16.31■□□□□ 0.2
LIMS1-202ENST00000338045 CYLDQ9NQC7 956 aa16.31■□□□□ 0.2
LIMS1-202ENST00000338045 DDX43Q9NXZ2 648 aaKnown RBP16.31■□□□□ 0.2
LIMS1-202ENST00000338045 KANSL3Q9P2N6 904 aa16.31■□□□□ 0.2
LIMS1-202ENST00000338045 DCDC2CA8MYV0 355 aa16.31■□□□□ 0.2
LIMS1-202ENST00000338045 GOLGA8SH3BPF8 625 aa16.31■□□□□ 0.2
LIMS1-202ENST00000338045 CCDC188H7C350 402 aa16.31■□□□□ 0.2
LIMS1-202ENST00000338045 TKTP29401 623 aaKnown RBP16.31■□□□□ 0.2
LIMS1-202ENST00000338045 TAS2R40P59535 323 aa16.31■□□□□ 0.2
LIMS1-202ENST00000338045 KIAA0319Q5VV43 1072 aa16.31■□□□□ 0.2
LIMS1-202ENST00000338045 RHOT1Q8IXI2 618 aa16.31■□□□□ 0.2
LIMS1-202ENST00000338045 FUKQ8N0W3 1084 aa16.31■□□□□ 0.2
LIMS1-202ENST00000338045 JOSD2Q8TAC2 188 aa16.31■□□□□ 0.2
LIMS1-202ENST00000338045 SLC2A14Q8TDB8 520 aa16.31■□□□□ 0.2
LIMS1-202ENST00000338045 ST7Q9NRC1 585 aa16.31■□□□□ 0.2
LIMS1-202ENST00000338045 SBDSQ9Y3A5 250 aaKnown RBP eCLIP16.31■□□□□ 0.2
LIMS1-202ENST00000338045 TMEM189-UBE2V1I3L0A0 370 aa16.3■□□□□ 0.2
LIMS1-202ENST00000338045 B4GALT3O60512 393 aa16.3■□□□□ 0.2
LIMS1-202ENST00000338045 ATP2C2O75185 946 aa16.3■□□□□ 0.2
LIMS1-202ENST00000338045 GABBR2O75899 941 aa16.3■□□□□ 0.2
LIMS1-202ENST00000338045 HSPA8P11142 646 aaKnown RBP16.3■□□□□ 0.2
LIMS1-202ENST00000338045 ODC1P11926 461 aa16.3■□□□□ 0.2
LIMS1-202ENST00000338045 TLE2Q04725 743 aa16.3■□□□□ 0.2
LIMS1-202ENST00000338045 TRIM60Q495X7 471 aa16.3■□□□□ 0.2
LIMS1-202ENST00000338045 LRRC38Q5VT99 294 aa16.3■□□□□ 0.2
LIMS1-202ENST00000338045 CCDC70Q6NSX1 233 aa16.3■□□□□ 0.2
LIMS1-202ENST00000338045 AADACL2Q6P093 401 aa16.3■□□□□ 0.2
LIMS1-202ENST00000338045 CRIPAKQ8N1N5 446 aa16.3■□□□□ 0.2
LIMS1-202ENST00000338045 URGCPQ8TCY9 931 aa16.3■□□□□ 0.2
LIMS1-202ENST00000338045 SUSD3Q96L08 255 aa16.3■□□□□ 0.2
LIMS1-202ENST00000338045 LRRC1Q9BTT6 524 aa16.3■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms