RNA–Protein interactions for RNA: ENST00000332797.10

CCDC28A-201, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,496 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-201ENST00000332797 PRKAG3Q9UGI9 489 aa16.93■□□□□ 0.3
CCDC28A-201ENST00000332797 TPM2P07951 284 aa16.92■□□□□ 0.3
CCDC28A-201ENST00000332797 PTPN2P17706 415 aa16.92■□□□□ 0.3
CCDC28A-201ENST00000332797 BDNFP23560 247 aa16.92■□□□□ 0.3
CCDC28A-201ENST00000332797 GPR15P49685 360 aa16.92■□□□□ 0.3
CCDC28A-201ENST00000332797 YWHAEP62258 255 aaKnown RBP16.92■□□□□ 0.3
CCDC28A-201ENST00000332797 ZP2Q05996 745 aa16.92■□□□□ 0.3
CCDC28A-201ENST00000332797 VEPH1Q14D04 833 aa16.92■□□□□ 0.3
CCDC28A-201ENST00000332797 EXOC3L4Q17RC7 722 aa16.92■□□□□ 0.3
CCDC28A-201ENST00000332797 PABPC1LQ4VXU2 614 aaKnown RBP16.92■□□□□ 0.3
CCDC28A-201ENST00000332797 RRAGAQ7L523 313 aa16.92■□□□□ 0.3
CCDC28A-201ENST00000332797 GET4Q7L5D6 327 aaPredicted RBP16.92■□□□□ 0.3
CCDC28A-201ENST00000332797 SCN4BQ8IWT1 228 aa16.92■□□□□ 0.3
CCDC28A-201ENST00000332797 ANKRD20A12PQ8NF67 263 aa16.92■□□□□ 0.3
CCDC28A-201ENST00000332797 WHAMMQ8TF30 809 aa16.92■□□□□ 0.3
CCDC28A-201ENST00000332797 GIPC2Q8TF65 315 aa16.92■□□□□ 0.3
CCDC28A-201ENST00000332797 MED10Q9BTT4 135 aa16.92■□□□□ 0.3
CCDC28A-201ENST00000332797 B3GNT5Q9BYG0 378 aa16.92■□□□□ 0.3
CCDC28A-201ENST00000332797 ELOVL4Q9GZR5 314 aa16.92■□□□□ 0.3
CCDC28A-201ENST00000332797 DNAI2Q9GZS0 605 aa16.92■□□□□ 0.3
CCDC28A-201ENST00000332797 VPS16Q9H269 839 aa16.92■□□□□ 0.3
CCDC28A-201ENST00000332797 FAM49BQ9NUQ9 324 aa16.92■□□□□ 0.3
CCDC28A-201ENST00000332797 ATP8B3O60423 1300 aa16.91■□□□□ 0.3
CCDC28A-201ENST00000332797 GTPBP10A4D1E9 387 aaKnown RBP16.91■□□□□ 0.3
CCDC28A-201ENST00000332797 SMTNL1A8MU46 457 aa16.91■□□□□ 0.3
CCDC28A-201ENST00000332797 CLDN5O00501 218 aa16.91■□□□□ 0.3
CCDC28A-201ENST00000332797 RHOP08100 348 aa16.91■□□□□ 0.3
CCDC28A-201ENST00000332797 CCDC130P13994 396 aa16.91■□□□□ 0.3
CCDC28A-201ENST00000332797 SLC9A1P19634 815 aa16.91■□□□□ 0.3
CCDC28A-201ENST00000332797 CDK11BP21127 795 aaKnown RBP16.91■□□□□ 0.3
CCDC28A-201ENST00000332797 FSHRP23945 695 aa16.91■□□□□ 0.3
CCDC28A-201ENST00000332797 MAGEA11P43364 429 aa16.91■□□□□ 0.3
CCDC28A-201ENST00000332797 RPL10AP62906 217 aaKnown RBP16.91■□□□□ 0.3
CCDC28A-201ENST00000332797 DDR2Q16832 855 aa16.91■□□□□ 0.3
CCDC28A-201ENST00000332797 SDHAF4Q5VUM1 108 aa16.91■□□□□ 0.3
CCDC28A-201ENST00000332797 TRIM65Q6PJ69 517 aa16.91■□□□□ 0.3
CCDC28A-201ENST00000332797 HS6ST3Q8IZP7 471 aa16.91■□□□□ 0.3
CCDC28A-201ENST00000332797 CRYBG2Q8N1P7 616 aa16.91■□□□□ 0.3
CCDC28A-201ENST00000332797 C12orf29Q8N999 325 aa16.91■□□□□ 0.3
CCDC28A-201ENST00000332797 GPR152Q8TDT2 470 aa16.91■□□□□ 0.3
CCDC28A-201ENST00000332797 KAT5Q92993 513 aa16.91■□□□□ 0.3
CCDC28A-201ENST00000332797 UHRF1Q96T88 793 aaPredicted RBP16.91■□□□□ 0.3
CCDC28A-201ENST00000332797 ZNF518BQ9C0D4 1074 aa16.91■□□□□ 0.3
CCDC28A-201ENST00000332797 FAM124BQ9H5Z6 455 aaPredicted RBP16.91■□□□□ 0.3
CCDC28A-201ENST00000332797 NR2E1Q9Y466 385 aa16.91■□□□□ 0.3
CCDC28A-201ENST00000332797 BECN2A8MW95 431 aa16.9■□□□□ 0.3
CCDC28A-201ENST00000332797 ZNF18P17022 549 aa16.9■□□□□ 0.3
CCDC28A-201ENST00000332797 SSTR3P32745 418 aaPredicted RBP16.9■□□□□ 0.3
CCDC28A-201ENST00000332797 GRIK1P39086 918 aa16.9■□□□□ 0.3
CCDC28A-201ENST00000332797 PHLDB3Q6NSJ2 640 aa16.9■□□□□ 0.3
CCDC28A-201ENST00000332797 ITIH5Q86UX2 942 aa16.9■□□□□ 0.3
CCDC28A-201ENST00000332797 FAM35AQ86V20 835 aa16.9■□□□□ 0.3
CCDC28A-201ENST00000332797 UBR7Q8N806 425 aa16.9■□□□□ 0.3
CCDC28A-201ENST00000332797 TDRD5Q8NAT2 981 aaKnown RBP16.9■□□□□ 0.3
CCDC28A-201ENST00000332797 STKLD1Q8NE28 680 aa16.9■□□□□ 0.3
CCDC28A-201ENST00000332797 PSMG2Q969U7 264 aa16.9■□□□□ 0.3
CCDC28A-201ENST00000332797 HSD3B7Q9H2F3 369 aa16.9■□□□□ 0.3
CCDC28A-201ENST00000332797 ASAH2Q9NR71 780 aa16.9■□□□□ 0.3
CCDC28A-201ENST00000332797 ASB3Q9Y575 518 aa16.9■□□□□ 0.3
CCDC28A-201ENST00000332797 C2CD4DB7Z1M9 353 aa16.89■□□□□ 0.29
CCDC28A-201ENST00000332797 MYL4P12829 197 aa16.89■□□□□ 0.29
CCDC28A-201ENST00000332797 PON1P27169 355 aa16.89■□□□□ 0.29
CCDC28A-201ENST00000332797 GBP2P32456 591 aaPredicted RBP16.89■□□□□ 0.29
CCDC28A-201ENST00000332797 COPB1P53618 953 aaKnown RBP16.89■□□□□ 0.29
CCDC28A-201ENST00000332797 APBA1Q02410 837 aa16.89■□□□□ 0.29
CCDC28A-201ENST00000332797 GCNT1Q02742 428 aa16.89■□□□□ 0.29
CCDC28A-201ENST00000332797 IQCB1Q15051 598 aa16.89■□□□□ 0.29
CCDC28A-201ENST00000332797 TAF12Q16514 161 aa16.89■□□□□ 0.29
CCDC28A-201ENST00000332797 CYP4A22Q5TCH4 519 aa16.89■□□□□ 0.29
CCDC28A-201ENST00000332797 VSTM1Q6UX27 236 aa16.89■□□□□ 0.29
CCDC28A-201ENST00000332797 PDZD4Q76G19 769 aaPredicted RBP16.89■□□□□ 0.29
CCDC28A-201ENST00000332797 OTOP3Q7RTS5 596 aa16.89■□□□□ 0.29
CCDC28A-201ENST00000332797 DNAJB7Q7Z6W7 309 aaPredicted RBP16.89■□□□□ 0.29
CCDC28A-201ENST00000332797 FUKQ8N0W3 1084 aa16.89■□□□□ 0.29
CCDC28A-201ENST00000332797 SLC4A11Q8NBS3 891 aa16.89■□□□□ 0.29
CCDC28A-201ENST00000332797 ITFG1Q8TB96 612 aa16.89■□□□□ 0.29
CCDC28A-201ENST00000332797 SLC2A14Q8TDB8 520 aa16.89■□□□□ 0.29
CCDC28A-201ENST00000332797 ING5Q8WYH8 240 aa16.89■□□□□ 0.29
CCDC28A-201ENST00000332797 TMEM176AQ96HP8 235 aa16.89■□□□□ 0.29
CCDC28A-201ENST00000332797 CBX8Q9HC52 389 aa16.89■□□□□ 0.29
CCDC28A-201ENST00000332797 UBE2TQ9NPD8 197 aaPredicted RBP16.89■□□□□ 0.29
CCDC28A-201ENST00000332797 LIMA1Q9UHB6 759 aaKnown RBP16.89■□□□□ 0.29
CCDC28A-201ENST00000332797 MRPS23Q9Y3D9 190 aaKnown RBP16.89■□□□□ 0.29
CCDC28A-201ENST00000332797 PCDHB4Q9Y5E5 795 aa16.89■□□□□ 0.29
CCDC28A-201ENST00000332797 PTPRDP23468 1912 aa16.89■□□□□ 0.29
CCDC28A-201ENST00000332797 A0A0C4DFX4 3053 aa16.89■□□□□ 0.29
CCDC28A-201ENST00000332797 LOC730098B7Z3J9 87 aa16.88■□□□□ 0.29
CCDC28A-201ENST00000332797 TRIM66O15016 1216 aa16.88■□□□□ 0.29
CCDC28A-201ENST00000332797 ATP1A3P13637 1013 aa16.88■□□□□ 0.29
CCDC28A-201ENST00000332797 ACO1P21399 889 aaKnown RBP16.88■□□□□ 0.29
CCDC28A-201ENST00000332797 ANXA13P27216 316 aa16.88■□□□□ 0.29
CCDC28A-201ENST00000332797 ADORA2BP29275 332 aa16.88■□□□□ 0.29
CCDC28A-201ENST00000332797 CACNA2D1P54289 1103 aa16.88■□□□□ 0.29
CCDC28A-201ENST00000332797 RAD23BP54727 409 aa16.88■□□□□ 0.29
CCDC28A-201ENST00000332797 SLC5A9Q2M3M2 681 aa16.88■□□□□ 0.29
CCDC28A-201ENST00000332797 GJB7Q6PEY0 223 aa16.88■□□□□ 0.29
CCDC28A-201ENST00000332797 TMEM270Q6UE05 265 aa16.88■□□□□ 0.29
CCDC28A-201ENST00000332797 ACSF2Q96CM8 615 aaPredicted RBP16.88■□□□□ 0.29
CCDC28A-201ENST00000332797 TCEAL4Q96EI5 215 aa16.88■□□□□ 0.29
CCDC28A-201ENST00000332797 SMARCD1Q96GM5 515 aa16.88■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms