RNA–Protein interactions for RNA: ENST00000331433.4

CLCNKA-201, Transcript of chloride voltage-gated channel Ka, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CLCNKA, Length 2,475 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-201ENST00000331433 H3BRB1 525 aa15.65■□□□□ 0.1
CLCNKA-201ENST00000331433 PIK3R2O00459 728 aa15.65■□□□□ 0.1
CLCNKA-201ENST00000331433 DNALI1O14645 258 aaPredicted RBP15.65■□□□□ 0.1
CLCNKA-201ENST00000331433 TSPAN1O60635 241 aa15.65■□□□□ 0.1
CLCNKA-201ENST00000331433 SNAI1O95863 264 aaPredicted RBP15.65■□□□□ 0.1
CLCNKA-201ENST00000331433 CD48P09326 243 aa15.65■□□□□ 0.1
CLCNKA-201ENST00000331433 PTPN7P35236 360 aa15.65■□□□□ 0.1
CLCNKA-201ENST00000331433 LRRC14Q15048 493 aa15.65■□□□□ 0.1
CLCNKA-201ENST00000331433 MAP1SQ66K74 1059 aaPredicted RBP15.65■□□□□ 0.1
CLCNKA-201ENST00000331433 POLNQ7Z5Q5 900 aa15.65■□□□□ 0.1
CLCNKA-201ENST00000331433 CYP4X1Q8N118 509 aa15.65■□□□□ 0.1
CLCNKA-201ENST00000331433 UBA3Q8TBC4 463 aa15.65■□□□□ 0.1
CLCNKA-201ENST00000331433 MGARPQ8TDB4 240 aa15.65■□□□□ 0.1
CLCNKA-201ENST00000331433 HEXIM2Q96MH2 286 aaKnown RBP15.65■□□□□ 0.1
CLCNKA-201ENST00000331433 SYT17Q9BSW7 474 aa15.65■□□□□ 0.1
CLCNKA-201ENST00000331433 KATNBL1Q9H079 304 aa15.65■□□□□ 0.1
CLCNKA-201ENST00000331433 CXCL16Q9H2A7 254 aa15.65■□□□□ 0.1
CLCNKA-201ENST00000331433 TUT1Q9H6E5 874 aaKnown RBP15.65■□□□□ 0.1
CLCNKA-201ENST00000331433 WDR3Q9UNX4 943 aaKnown RBP eCLIP15.65■□□□□ 0.1
CLCNKA-201ENST00000331433 CITO14578 2027 aa15.64■□□□□ 0.09
CLCNKA-201ENST00000331433 KAT6AQ92794 2004 aa15.64■□□□□ 0.09
CLCNKA-201ENST00000331433 MAGEA4P43358 317 aa15.64■□□□□ 0.09
CLCNKA-201ENST00000331433 TAF5Q15542 800 aa15.64■□□□□ 0.09
CLCNKA-201ENST00000331433 CNGA2Q16280 664 aa15.64■□□□□ 0.09
CLCNKA-201ENST00000331433 GKAP1Q5VSY0 366 aaPredicted RBP15.64■□□□□ 0.09
CLCNKA-201ENST00000331433 PPP1R13LQ8WUF5 828 aa15.64■□□□□ 0.09
CLCNKA-201ENST00000331433 SAYSD1Q9NPB0 183 aa15.64■□□□□ 0.09
CLCNKA-201ENST00000331433 GINS2Q9Y248 185 aa15.64■□□□□ 0.09
CLCNKA-201ENST00000331433 CENPFP49454 3210 aa15.64■□□□□ 0.09
CLCNKA-201ENST00000331433 TRIP11Q15643 1979 aa15.64■□□□□ 0.09
CLCNKA-201ENST00000331433 BTBD19C9JJ37 291 aa15.63■□□□□ 0.09
CLCNKA-201ENST00000331433 SGK1O00141 431 aa15.63■□□□□ 0.09
CLCNKA-201ENST00000331433 PECAM1P16284 738 aaPredicted RBP15.63■□□□□ 0.09
CLCNKA-201ENST00000331433 FASTKD3Q14CZ7 662 aaKnown RBP15.63■□□□□ 0.09
CLCNKA-201ENST00000331433 MARCH8Q5T0T0 291 aa15.63■□□□□ 0.09
CLCNKA-201ENST00000331433 CACNA2D3Q8IZS8 1091 aa15.63■□□□□ 0.09
CLCNKA-201ENST00000331433 CCHCR1Q8TD31 782 aa15.63■□□□□ 0.09
CLCNKA-201ENST00000331433 CABS1Q96KC9 395 aa15.63■□□□□ 0.09
CLCNKA-201ENST00000331433 MLXIPLQ9NP71 852 aa15.63■□□□□ 0.09
CLCNKA-201ENST00000331433 GGA2Q9UJY4 613 aa15.63■□□□□ 0.09
CLCNKA-201ENST00000331433 DRG1Q9Y295 367 aaKnown RBP15.63■□□□□ 0.09
CLCNKA-201ENST00000331433 TMEM120BA0PK00 339 aa15.63■□□□□ 0.09
CLCNKA-201ENST00000331433 CST8O60676 142 aa15.63■□□□□ 0.09
CLCNKA-201ENST00000331433 ATICP31939 592 aa15.63■□□□□ 0.09
CLCNKA-201ENST00000331433 GPD2P43304 727 aa15.63■□□□□ 0.09
CLCNKA-201ENST00000331433 NDST1P52848 882 aa15.63■□□□□ 0.09
CLCNKA-201ENST00000331433 TMEM62Q0P6H9 643 aa15.63■□□□□ 0.09
CLCNKA-201ENST00000331433 GRIK4Q16099 956 aa15.63■□□□□ 0.09
CLCNKA-201ENST00000331433 VSTM1Q6UX27 236 aa15.63■□□□□ 0.09
CLCNKA-201ENST00000331433 YTHDF3Q7Z739 585 aaKnown RBP15.63■□□□□ 0.09
CLCNKA-201ENST00000331433 PACS2Q86VP3 889 aa15.63■□□□□ 0.09
CLCNKA-201ENST00000331433 LRRC34Q8IZ02 419 aa15.63■□□□□ 0.09
CLCNKA-201ENST00000331433 ACTL9Q8TC94 416 aa15.63■□□□□ 0.09
CLCNKA-201ENST00000331433 FNIP1Q8TF40 1166 aa15.63■□□□□ 0.09
CLCNKA-201ENST00000331433 NKD2Q969F2 451 aaPredicted RBP15.63■□□□□ 0.09
CLCNKA-201ENST00000331433 ACAP3Q96P50 834 aa15.63■□□□□ 0.09
CLCNKA-201ENST00000331433 VRTNQ9H8Y1 702 aa15.63■□□□□ 0.09
CLCNKA-201ENST00000331433 DPP3Q9NY33 737 aa15.63■□□□□ 0.09
CLCNKA-201ENST00000331433 DYNC1LI1Q9Y6G9 523 aaKnown RBP15.63■□□□□ 0.09
CLCNKA-201ENST00000331433 RBM47A0AV96 593 aaKnown RBP15.62■□□□□ 0.09
CLCNKA-201ENST00000331433 ECM2O94769 699 aaPredicted RBP15.62■□□□□ 0.09
CLCNKA-201ENST00000331433 KRT7P08729 469 aa15.62■□□□□ 0.09
CLCNKA-201ENST00000331433 SMPD1P17405 629 aa15.62■□□□□ 0.09
CLCNKA-201ENST00000331433 CYP3A5P20815 502 aa15.62■□□□□ 0.09
CLCNKA-201ENST00000331433 KDELR1P24390 212 aa15.62■□□□□ 0.09
CLCNKA-201ENST00000331433 GDF10P55107 478 aa15.62■□□□□ 0.09
CLCNKA-201ENST00000331433 OTUD4Q01804 1114 aaKnown RBP15.62■□□□□ 0.09
CLCNKA-201ENST00000331433 ADCY1Q08828 1119 aa15.62■□□□□ 0.09
CLCNKA-201ENST00000331433 ZNF268Q14587 947 aaPredicted RBP15.62■□□□□ 0.09
CLCNKA-201ENST00000331433 HADHQ16836 314 aaKnown RBP15.62■□□□□ 0.09
CLCNKA-201ENST00000331433 FAM102AQ5T9C2 384 aaPredicted RBP15.62■□□□□ 0.09
CLCNKA-201ENST00000331433 RELL1Q8IUW5 271 aa15.62■□□□□ 0.09
CLCNKA-201ENST00000331433 SLC35B2Q8TB61 432 aa15.62■□□□□ 0.09
CLCNKA-201ENST00000331433 EMID1Q96A84 441 aaPredicted RBP15.62■□□□□ 0.09
CLCNKA-201ENST00000331433 MS4A4AQ96JQ5 239 aa15.62■□□□□ 0.09
CLCNKA-201ENST00000331433 CYP3A43Q9HB55 503 aa15.62■□□□□ 0.09
CLCNKA-201ENST00000331433 WDR35Q9P2L0 1181 aa15.62■□□□□ 0.09
CLCNKA-201ENST00000331433 TPX2Q9ULW0 747 aaKnown RBP15.62■□□□□ 0.09
CLCNKA-201ENST00000331433 CCL15-CCL14A0A0B4J2E2 113 aa15.62■□□□□ 0.09
CLCNKA-201ENST00000331433 ITGAVP06756 1048 aa15.62■□□□□ 0.09
CLCNKA-201ENST00000331433 P4HA1P13674 534 aa15.62■□□□□ 0.09
CLCNKA-201ENST00000331433 MIPP30301 263 aa15.62■□□□□ 0.09
CLCNKA-201ENST00000331433 CCL15Q16663 113 aa15.62■□□□□ 0.09
CLCNKA-201ENST00000331433 KIZQ2M2Z5 673 aa15.62■□□□□ 0.09
CLCNKA-201ENST00000331433 RAB6CQ53S08 254 aa15.62■□□□□ 0.09
CLCNKA-201ENST00000331433 SH3PXD2AQ5TCZ1 1133 aa15.62■□□□□ 0.09
CLCNKA-201ENST00000331433 CAPN12Q6ZSI9 719 aa15.62■□□□□ 0.09
CLCNKA-201ENST00000331433 C12orf29Q8N999 325 aa15.62■□□□□ 0.09
CLCNKA-201ENST00000331433 ANKRD42Q8N9B4 389 aa15.62■□□□□ 0.09
CLCNKA-201ENST00000331433 HSPH1Q92598 858 aa15.62■□□□□ 0.09
CLCNKA-201ENST00000331433 KIF12Q96FN5 646 aa15.62■□□□□ 0.09
CLCNKA-201ENST00000331433 PIWIL1Q96J94 861 aaKnown RBP15.62■□□□□ 0.09
CLCNKA-201ENST00000331433 RAB6CQ9H0N0 254 aa15.62■□□□□ 0.09
CLCNKA-201ENST00000331433 KCNK9Q9NPC2 374 aa15.62■□□□□ 0.09
CLCNKA-201ENST00000331433 BARX2Q9UMQ3 279 aaPredicted RBP15.62■□□□□ 0.09
CLCNKA-201ENST00000331433 NAALADL1Q9UQQ1 740 aa15.62■□□□□ 0.09
CLCNKA-201ENST00000331433 COL1A2P08123 1366 aa15.62■□□□□ 0.09
CLCNKA-201ENST00000331433 SCN1AP35498 2009 aa15.61■□□□□ 0.09
CLCNKA-201ENST00000331433 A0A1B0GUA9 196 aa15.61■□□□□ 0.09
CLCNKA-201ENST00000331433 GOLGA8MH3BSY2 632 aa15.61■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms