RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 FBXL19Q6PCT2 694 aa14.1□□□□□ -0.15
CCDC88C-201ENST00000331194 MFSD7Q6UXD7 560 aa14.1□□□□□ -0.15
CCDC88C-201ENST00000331194 PDSS2Q86YH6 399 aa14.1□□□□□ -0.15
CCDC88C-201ENST00000331194 ARID3BQ8IVW6 561 aaPredicted RBP14.1□□□□□ -0.15
CCDC88C-201ENST00000331194 POU5F2Q8N7G0 328 aa14.1□□□□□ -0.15
CCDC88C-201ENST00000331194 DDX51Q8N8A6 666 aaKnown RBP eCLIP14.1□□□□□ -0.15
CCDC88C-201ENST00000331194 SLC26A7Q8TE54 656 aa14.1□□□□□ -0.15
CCDC88C-201ENST00000331194 PYROXD1Q8WU10 500 aa14.1□□□□□ -0.15
CCDC88C-201ENST00000331194 LENG1Q96BZ8 264 aaPredicted RBP14.1□□□□□ -0.15
CCDC88C-201ENST00000331194 CD209Q9NNX6 404 aa14.1□□□□□ -0.15
CCDC88C-201ENST00000331194 GINM1Q9NU53 330 aa14.1□□□□□ -0.15
CCDC88C-201ENST00000331194 CAPN14A8MX76 684 aa14.1□□□□□ -0.15
CCDC88C-201ENST00000331194 SGK1O00141 431 aa14.1□□□□□ -0.15
CCDC88C-201ENST00000331194 PDLIM1O00151 329 aa14.1□□□□□ -0.15
CCDC88C-201ENST00000331194 CYB561D2O14569 222 aa14.1□□□□□ -0.15
CCDC88C-201ENST00000331194 TM7SF2O76062 418 aa14.1□□□□□ -0.15
CCDC88C-201ENST00000331194 PDE5AO76074 875 aa14.1□□□□□ -0.15
CCDC88C-201ENST00000331194 EPHB1P54762 984 aa14.1□□□□□ -0.15
CCDC88C-201ENST00000331194 ASPHQ12797 758 aa14.1□□□□□ -0.15
CCDC88C-201ENST00000331194 RNASEH2BQ5TBB1 312 aaKnown RBP14.1□□□□□ -0.15
CCDC88C-201ENST00000331194 RBM44Q6ZP01 1051 aaKnown RBP14.1□□□□□ -0.15
CCDC88C-201ENST00000331194 NET1Q7Z628 596 aaPredicted RBP14.1□□□□□ -0.15
CCDC88C-201ENST00000331194 SLC24A2Q9UI40 661 aa14.1□□□□□ -0.15
CCDC88C-201ENST00000331194 C6orf229H3BNL8 230 aa14.09□□□□□ -0.15
CCDC88C-201ENST00000331194 TBX3O15119 743 aa14.09□□□□□ -0.15
CCDC88C-201ENST00000331194 VCLP18206 1134 aa14.09□□□□□ -0.15
CCDC88C-201ENST00000331194 SREBF1P36956 1147 aa14.09□□□□□ -0.15
CCDC88C-201ENST00000331194 DYNLT1P63172 113 aa14.09□□□□□ -0.15
CCDC88C-201ENST00000331194 CCDC142Q17RM4 750 aa14.09□□□□□ -0.15
CCDC88C-201ENST00000331194 DPY19L2Q6NUT2 758 aa14.09□□□□□ -0.15
CCDC88C-201ENST00000331194 DUS1LQ6P1R4 473 aaKnown RBP14.09□□□□□ -0.15
CCDC88C-201ENST00000331194 CENPUQ71F23 418 aa14.09□□□□□ -0.15
CCDC88C-201ENST00000331194 DCAKDQ8WVC6 231 aa14.09□□□□□ -0.15
CCDC88C-201ENST00000331194 SERPINB13Q9UIV8 391 aa14.09□□□□□ -0.15
CCDC88C-201ENST00000331194 VILLO15195 856 aa14.09□□□□□ -0.15
CCDC88C-201ENST00000331194 MAGEC1O60732 1142 aa14.09□□□□□ -0.15
CCDC88C-201ENST00000331194 PROSCO94903 275 aa14.09□□□□□ -0.15
CCDC88C-201ENST00000331194 MT-ND3P03897 115 aa14.09□□□□□ -0.15
CCDC88C-201ENST00000331194 UNGP13051 313 aaPredicted RBP14.09□□□□□ -0.15
CCDC88C-201ENST00000331194 DSG3P32926 999 aa14.09□□□□□ -0.15
CCDC88C-201ENST00000331194 GALK1P51570 392 aa14.09□□□□□ -0.15
CCDC88C-201ENST00000331194 GDF10P55107 478 aa14.09□□□□□ -0.15
CCDC88C-201ENST00000331194 BTKQ06187 659 aa14.09□□□□□ -0.15
CCDC88C-201ENST00000331194 FAAP100Q0VG06 881 aa14.09□□□□□ -0.15
CCDC88C-201ENST00000331194 NFX1Q12986 1120 aaKnown RBP14.09□□□□□ -0.15
CCDC88C-201ENST00000331194 PEX6Q13608 980 aa14.09□□□□□ -0.15
CCDC88C-201ENST00000331194 R3HDM1Q15032 1099 aaKnown RBP14.09□□□□□ -0.15
CCDC88C-201ENST00000331194 DLGAP5Q15398 846 aa14.09□□□□□ -0.15
CCDC88C-201ENST00000331194 HIF1AQ16665 826 aa14.09□□□□□ -0.15
CCDC88C-201ENST00000331194 BBS9Q3SYG4 887 aa14.09□□□□□ -0.15
CCDC88C-201ENST00000331194 LMBRD2Q68DH5 695 aaPredicted RBP14.09□□□□□ -0.15
CCDC88C-201ENST00000331194 ACAD11Q709F0 780 aa14.09□□□□□ -0.15
CCDC88C-201ENST00000331194 ZFPM1Q8IX07 1006 aa14.09□□□□□ -0.15
CCDC88C-201ENST00000331194 ARHGAP24Q8N264 748 aa14.09□□□□□ -0.15
CCDC88C-201ENST00000331194 XXYLT1Q8NBI6 393 aa14.09□□□□□ -0.15
CCDC88C-201ENST00000331194 SMC1BQ8NDV3 1235 aa14.09□□□□□ -0.15
CCDC88C-201ENST00000331194 FBXO36Q8NEA4 188 aa14.09□□□□□ -0.15
CCDC88C-201ENST00000331194 ACAP3Q96P50 834 aa14.09□□□□□ -0.15
CCDC88C-201ENST00000331194 IWS1Q96ST2 819 aa14.09□□□□□ -0.15
CCDC88C-201ENST00000331194 EBF4Q9BQW3 602 aa14.09□□□□□ -0.15
CCDC88C-201ENST00000331194 GPRC5CQ9NQ84 441 aa14.09□□□□□ -0.15
CCDC88C-201ENST00000331194 ZNF510Q9Y2H8 683 aa14.09□□□□□ -0.15
CCDC88C-201ENST00000331194 DAGLAQ9Y4D2 1042 aa14.09□□□□□ -0.15
CCDC88C-201ENST00000331194 IGLV3-22A0A075B6J6 115 aa14.08□□□□□ -0.15
CCDC88C-201ENST00000331194 F8W8V4 182 aa14.08□□□□□ -0.15
CCDC88C-201ENST00000331194 C6orf222P0C671 652 aaPredicted RBP14.08□□□□□ -0.15
CCDC88C-201ENST00000331194 SLFN13Q68D06 897 aa14.08□□□□□ -0.15
CCDC88C-201ENST00000331194 ADGRD1Q6QNK2 874 aa14.08□□□□□ -0.15
CCDC88C-201ENST00000331194 SLC9A9Q8IVB4 645 aa14.08□□□□□ -0.15
CCDC88C-201ENST00000331194 IGDCC3Q8IVU1 814 aa14.08□□□□□ -0.15
CCDC88C-201ENST00000331194 OLFM3Q96PB7 478 aa14.08□□□□□ -0.15
CCDC88C-201ENST00000331194 C20orf27Q9GZN8 174 aa14.08□□□□□ -0.15
CCDC88C-201ENST00000331194 ZBTB21Q9ULJ3 1066 aa14.08□□□□□ -0.15
CCDC88C-201ENST00000331194 HEMK1Q9Y5R4 338 aaPredicted RBP14.08□□□□□ -0.15
CCDC88C-201ENST00000331194 A0A0J9YVX5 310 aa14.08□□□□□ -0.16
CCDC88C-201ENST00000331194 SLC26A4O43511 780 aa14.08□□□□□ -0.16
CCDC88C-201ENST00000331194 ATP6V1B1P15313 513 aa14.08□□□□□ -0.16
CCDC88C-201ENST00000331194 ETV4P43268 484 aa14.08□□□□□ -0.16
CCDC88C-201ENST00000331194 RPL7AP62424 266 aaKnown RBP14.08□□□□□ -0.16
CCDC88C-201ENST00000331194 TMED1Q13445 227 aa14.08□□□□□ -0.16
CCDC88C-201ENST00000331194 PDK3Q15120 406 aa14.08□□□□□ -0.16
CCDC88C-201ENST00000331194 TRMT5Q32P41 509 aaKnown RBP14.08□□□□□ -0.16
CCDC88C-201ENST00000331194 MMEL1Q495T6 779 aa14.08□□□□□ -0.16
CCDC88C-201ENST00000331194 RC3H1Q5TC82 1133 aaKnown RBP14.08□□□□□ -0.16
CCDC88C-201ENST00000331194 MOXD1Q6UVY6 613 aa14.08□□□□□ -0.16
CCDC88C-201ENST00000331194 STXBP4Q6ZWJ1 553 aa14.08□□□□□ -0.16
CCDC88C-201ENST00000331194 RHOT1Q8IXI2 618 aa14.08□□□□□ -0.16
CCDC88C-201ENST00000331194 ALLCQ8N6M5 410 aa14.08□□□□□ -0.16
CCDC88C-201ENST00000331194 STKLD1Q8NE28 680 aa14.08□□□□□ -0.16
CCDC88C-201ENST00000331194 GCNAQ96QF7 691 aa14.08□□□□□ -0.16
CCDC88C-201ENST00000331194 KIFC3Q9BVG8 833 aa14.08□□□□□ -0.16
CCDC88C-201ENST00000331194 NYXQ9GZU5 481 aa14.08□□□□□ -0.16
CCDC88C-201ENST00000331194 PACSIN3Q9UKS6 424 aa14.08□□□□□ -0.16
CCDC88C-201ENST00000331194 A0A088AWK7 358 aa14.08□□□□□ -0.16
CCDC88C-201ENST00000331194 TPD52L2O43399 206 aaKnown RBP14.08□□□□□ -0.16
CCDC88C-201ENST00000331194 AQP5P55064 265 aa14.08□□□□□ -0.16
CCDC88C-201ENST00000331194 AP3B2Q13367 1082 aa14.08□□□□□ -0.16
CCDC88C-201ENST00000331194 MAP7Q14244 749 aa14.08□□□□□ -0.16
CCDC88C-201ENST00000331194 GK3PQ14409 553 aa14.08□□□□□ -0.16
CCDC88C-201ENST00000331194 NME8Q8N427 588 aa14.08□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 54.5 ms