RNA–Protein interactions for RNA: ENST00000329399.6

PDLIM1-201, Transcript of PDZ and LIM domain 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PDLIM1, Length 1,452 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1-201ENST00000329399 C1orf127Q8N9H9 656 aa17.52■□□□□ 0.4
PDLIM1-201ENST00000329399 BEST2Q8NFU1 509 aa17.52■□□□□ 0.4
PDLIM1-201ENST00000329399 TAF4BQ92750 862 aa17.52■□□□□ 0.4
PDLIM1-201ENST00000329399 ADAM7Q9H2U9 754 aa17.52■□□□□ 0.4
PDLIM1-201ENST00000329399 FAM124BQ9H5Z6 455 aaPredicted RBP17.52■□□□□ 0.4
PDLIM1-201ENST00000329399 MTRRQ9UBK8 725 aa17.52■□□□□ 0.4
PDLIM1-201ENST00000329399 SIX4Q9UIU6 781 aa17.52■□□□□ 0.4
PDLIM1-201ENST00000329399 REXO2Q9Y3B8 237 aaKnown RBP17.52■□□□□ 0.4
PDLIM1-201ENST00000329399 CDY1Q9Y6F8 540 aa17.52■□□□□ 0.4
PDLIM1-201ENST00000329399 M0QZQ0 153 aa17.51■□□□□ 0.39
PDLIM1-201ENST00000329399 TRAPPC3O43617 180 aa17.51■□□□□ 0.39
PDLIM1-201ENST00000329399 GLUD1P00367 558 aa17.51■□□□□ 0.39
PDLIM1-201ENST00000329399 HOXB8P17481 243 aaPredicted RBP17.51■□□□□ 0.39
PDLIM1-201ENST00000329399 CDR1P51861 262 aa17.51■□□□□ 0.39
PDLIM1-201ENST00000329399 PUS10Q3MIT2 529 aaKnown RBP17.51■□□□□ 0.39
PDLIM1-201ENST00000329399 CCDC122Q5T0U0 273 aa17.51■□□□□ 0.39
PDLIM1-201ENST00000329399 SYT10Q6XYQ8 523 aa17.51■□□□□ 0.39
PDLIM1-201ENST00000329399 FAM71AQ8IYT1 594 aa17.51■□□□□ 0.39
PDLIM1-201ENST00000329399 SHC3Q92529 594 aa17.51■□□□□ 0.39
PDLIM1-201ENST00000329399 LZTFL1Q9NQ48 299 aa17.51■□□□□ 0.39
PDLIM1-201ENST00000329399 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP17.51■□□□□ 0.39
PDLIM1-201ENST00000329399 C19orf67A6NJJ6 358 aa17.5■□□□□ 0.39
PDLIM1-201ENST00000329399 TNNC2P02585 160 aa17.5■□□□□ 0.39
PDLIM1-201ENST00000329399 SP100P23497 879 aaPredicted RBP17.5■□□□□ 0.39
PDLIM1-201ENST00000329399 ARHGAP25P42331 645 aa17.5■□□□□ 0.39
PDLIM1-201ENST00000329399 PTK2Q05397 1052 aa17.5■□□□□ 0.39
PDLIM1-201ENST00000329399 KREMEN2Q8NCW0 462 aa17.5■□□□□ 0.39
PDLIM1-201ENST00000329399 TAS1R2Q8TE23 839 aa17.5■□□□□ 0.39
PDLIM1-201ENST00000329399 ZNF516Q92618 1163 aa17.5■□□□□ 0.39
PDLIM1-201ENST00000329399 ZNF707Q96C28 371 aaPredicted RBP17.5■□□□□ 0.39
PDLIM1-201ENST00000329399 ANKRD36BP1Q96IX9 119 aa17.5■□□□□ 0.39
PDLIM1-201ENST00000329399 SENP8Q96LD8 212 aa17.5■□□□□ 0.39
PDLIM1-201ENST00000329399 MTMR12Q9C0I1 747 aa17.5■□□□□ 0.39
PDLIM1-201ENST00000329399 POMKQ9H5K3 350 aa17.5■□□□□ 0.39
PDLIM1-201ENST00000329399 DNAI1Q9UI46 699 aa17.5■□□□□ 0.39
PDLIM1-201ENST00000329399 PCDHB8Q9UN66 801 aa17.5■□□□□ 0.39
PDLIM1-201ENST00000329399 GTF3C5Q9Y5Q8 519 aaPredicted RBP17.5■□□□□ 0.39
PDLIM1-201ENST00000329399 CCDC195A0A1B0GUA6 201 aa17.5■□□□□ 0.39
PDLIM1-201ENST00000329399 SYN3O14994 580 aa17.5■□□□□ 0.39
PDLIM1-201ENST00000329399 PHACTR2O75167 634 aa17.5■□□□□ 0.39
PDLIM1-201ENST00000329399 HLA-DRAP01903 254 aa17.5■□□□□ 0.39
PDLIM1-201ENST00000329399 PLEKP08567 350 aaPredicted RBP17.5■□□□□ 0.39
PDLIM1-201ENST00000329399 PIK3CAP42336 1068 aa17.5■□□□□ 0.39
PDLIM1-201ENST00000329399 APBA1Q02410 837 aa17.5■□□□□ 0.39
PDLIM1-201ENST00000329399 BIRC3Q13489 604 aa17.5■□□□□ 0.39
PDLIM1-201ENST00000329399 RAB33AQ14088 237 aa17.5■□□□□ 0.39
PDLIM1-201ENST00000329399 CBX2Q14781 532 aaPredicted RBP17.5■□□□□ 0.39
PDLIM1-201ENST00000329399 IFI16Q16666 785 aaKnown RBP17.5■□□□□ 0.39
PDLIM1-201ENST00000329399 SGSM1Q2NKQ1 1148 aa17.5■□□□□ 0.39
PDLIM1-201ENST00000329399 PPP1R2P3Q6NXS1 205 aa17.5■□□□□ 0.39
PDLIM1-201ENST00000329399 ZNF677Q86XU0 584 aa17.5■□□□□ 0.39
PDLIM1-201ENST00000329399 ADHFE1Q8IWW8 467 aa17.5■□□□□ 0.39
PDLIM1-201ENST00000329399 PPM1KQ8N3J5 372 aa17.5■□□□□ 0.39
PDLIM1-201ENST00000329399 ZNF592Q92610 1267 aa17.5■□□□□ 0.39
PDLIM1-201ENST00000329399 TMEM209Q96SK2 561 aa17.5■□□□□ 0.39
PDLIM1-201ENST00000329399 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP17.5■□□□□ 0.39
PDLIM1-201ENST00000329399 GPR88Q9GZN0 384 aa17.5■□□□□ 0.39
PDLIM1-201ENST00000329399 R3HCC1Q9Y3T6 440 aaKnown RBP17.5■□□□□ 0.39
PDLIM1-201ENST00000329399 BACE2Q9Y5Z0 518 aa17.5■□□□□ 0.39
PDLIM1-201ENST00000329399 WDR27A2RRH5 827 aa17.49■□□□□ 0.39
PDLIM1-201ENST00000329399 FOXN3O00409 490 aaPredicted RBP17.49■□□□□ 0.39
PDLIM1-201ENST00000329399 XPOTO43592 962 aaKnown RBP17.49■□□□□ 0.39
PDLIM1-201ENST00000329399 VNN2O95498 520 aa17.49■□□□□ 0.39
PDLIM1-201ENST00000329399 ITGB3P05106 788 aa17.49■□□□□ 0.39
PDLIM1-201ENST00000329399 OR4Q2P0C623 313 aa17.49■□□□□ 0.39
PDLIM1-201ENST00000329399 SRGAP2BP0DMP2 458 aa17.49■□□□□ 0.39
PDLIM1-201ENST00000329399 POLR2BP30876 1174 aaKnown RBP17.49■□□□□ 0.39
PDLIM1-201ENST00000329399 ARPP19P56211 112 aa17.49■□□□□ 0.39
PDLIM1-201ENST00000329399 ARID5AQ03989 594 aa17.49■□□□□ 0.39
PDLIM1-201ENST00000329399 TDRD10Q5VZ19 366 aaKnown RBP17.49■□□□□ 0.39
PDLIM1-201ENST00000329399 SLC8B1Q6J4K2 584 aa17.49■□□□□ 0.39
PDLIM1-201ENST00000329399 ANKS3Q6ZW76 656 aa17.49■□□□□ 0.39
PDLIM1-201ENST00000329399 ZNF571Q7Z3V5 609 aaPredicted RBP17.49■□□□□ 0.39
PDLIM1-201ENST00000329399 GPR149Q86SP6 731 aa17.49■□□□□ 0.39
PDLIM1-201ENST00000329399 GJD3Q8N144 294 aa17.49■□□□□ 0.39
PDLIM1-201ENST00000329399 TRIM58Q8NG06 486 aa17.49■□□□□ 0.39
PDLIM1-201ENST00000329399 SEMA4DQ92854 862 aa17.49■□□□□ 0.39
PDLIM1-201ENST00000329399 RPGRIP1Q96KN7 1286 aa17.49■□□□□ 0.39
PDLIM1-201ENST00000329399 DZANK1Q9NVP4 752 aa17.49■□□□□ 0.39
PDLIM1-201ENST00000329399 ADAMTS1Q9UHI8 967 aa17.49■□□□□ 0.39
PDLIM1-201ENST00000329399 FBXW11Q9UKB1 542 aa17.49■□□□□ 0.39
PDLIM1-201ENST00000329399 AGAP1Q9UPQ3 857 aa17.49■□□□□ 0.39
PDLIM1-201ENST00000329399 MTCL1Q9Y4B5 1905 aaKnown RBP17.48■□□□□ 0.39
PDLIM1-201ENST00000329399 CTAGE9A4FU28 777 aa17.48■□□□□ 0.39
PDLIM1-201ENST00000329399 TNFRSF10AO00220 468 aa17.48■□□□□ 0.39
PDLIM1-201ENST00000329399 ZNF263O14978 683 aa17.48■□□□□ 0.39
PDLIM1-201ENST00000329399 TACC1O75410 805 aa17.48■□□□□ 0.39
PDLIM1-201ENST00000329399 OAZ2O95190 189 aa17.48■□□□□ 0.39
PDLIM1-201ENST00000329399 SEC24AO95486 1093 aa17.48■□□□□ 0.39
PDLIM1-201ENST00000329399 CST3P01034 146 aaPredicted RBP17.48■□□□□ 0.39
PDLIM1-201ENST00000329399 TMEM191BP0C7N4 346 aa17.48■□□□□ 0.39
PDLIM1-201ENST00000329399 TNFAIP3P21580 790 aa17.48■□□□□ 0.39
PDLIM1-201ENST00000329399 ATICP31939 592 aa17.48■□□□□ 0.39
PDLIM1-201ENST00000329399 YWHAEP62258 255 aaKnown RBP17.48■□□□□ 0.39
PDLIM1-201ENST00000329399 TUBB4BP68371 445 aa17.48■□□□□ 0.39
PDLIM1-201ENST00000329399 ROR1Q01973 937 aa17.48■□□□□ 0.39
PDLIM1-201ENST00000329399 ITIH3Q06033 890 aa17.48■□□□□ 0.39
PDLIM1-201ENST00000329399 NCOA4Q13772 614 aa17.48■□□□□ 0.39
PDLIM1-201ENST00000329399 ARHGAP44Q17R89 818 aa17.48■□□□□ 0.39
PDLIM1-201ENST00000329399 CTXN3Q4LDR2 81 aa17.48■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms