RNA–Protein interactions for RNA: ENST00000316433.8

ZNF540-201, Transcript of zinc finger protein 540, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene ZNF540, Length 3,099 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-201ENST00000316433 EXOC3O60645 756 aa6.96□□□□□ -1.3
ZNF540-201ENST00000316433 SNX2O60749 519 aa6.96□□□□□ -1.3
ZNF540-201ENST00000316433 CCDC22O60826 627 aa6.96□□□□□ -1.3
ZNF540-201ENST00000316433 GAS8O95995 478 aa6.96□□□□□ -1.3
ZNF540-201ENST00000316433 PLEKP08567 350 aaPredicted RBP6.96□□□□□ -1.3
ZNF540-201ENST00000316433 ABHD2P08910 425 aa6.96□□□□□ -1.3
ZNF540-201ENST00000316433 ADSLP30566 484 aaPredicted RBP6.96□□□□□ -1.3
ZNF540-201ENST00000316433 ADCY7P51828 1080 aa6.96□□□□□ -1.3
ZNF540-201ENST00000316433 BASP1P80723 227 aaKnown RBP6.96□□□□□ -1.3
ZNF540-201ENST00000316433 RALGDSQ12967 914 aa6.96□□□□□ -1.3
ZNF540-201ENST00000316433 CALCRLQ16602 461 aa6.96□□□□□ -1.3
ZNF540-201ENST00000316433 TJAP1Q5JTD0 557 aa6.96□□□□□ -1.3
ZNF540-201ENST00000316433 BTBD8Q5XKL5 378 aa6.96□□□□□ -1.3
ZNF540-201ENST00000316433 POTEHQ6S545 545 aa6.96□□□□□ -1.3
ZNF540-201ENST00000316433 NT5DC3Q86UY8 548 aa6.96□□□□□ -1.3
ZNF540-201ENST00000316433 ALLCQ8N6M5 410 aa6.96□□□□□ -1.3
ZNF540-201ENST00000316433 ETNPPLQ8TBG4 499 aa6.96□□□□□ -1.3
ZNF540-201ENST00000316433 ACTRT2Q8TDY3 377 aa6.96□□□□□ -1.3
ZNF540-201ENST00000316433 SDR42E1Q8WUS8 393 aa6.96□□□□□ -1.3
ZNF540-201ENST00000316433 CDHR1Q96JP9 859 aa6.96□□□□□ -1.3
ZNF540-201ENST00000316433 FBXL18Q96ME1 805 aa6.96□□□□□ -1.3
ZNF540-201ENST00000316433 MRPS26Q9BYN8 205 aaKnown RBP6.96□□□□□ -1.3
ZNF540-201ENST00000316433 VPS51Q9UID3 782 aa6.96□□□□□ -1.3
ZNF540-201ENST00000316433 IFT52Q9Y366 437 aa6.96□□□□□ -1.3
ZNF540-201ENST00000316433 WDR81Q562E7 1941 aa6.95□□□□□ -1.3
ZNF540-201ENST00000316433 C15orf38-AP3S2A0A0A6YYH1 394 aa6.95□□□□□ -1.3
ZNF540-201ENST00000316433 GOLGA8IPA6NC78 632 aa6.95□□□□□ -1.3
ZNF540-201ENST00000316433 GSC2O15499 205 aa6.95□□□□□ -1.3
ZNF540-201ENST00000316433 CALUO43852 315 aaPredicted RBP6.95□□□□□ -1.3
ZNF540-201ENST00000316433 PRDM1O75626 825 aa6.95□□□□□ -1.3
ZNF540-201ENST00000316433 ATP2B4P23634 1241 aa6.95□□□□□ -1.3
ZNF540-201ENST00000316433 RPA1P27694 616 aa6.95□□□□□ -1.3
ZNF540-201ENST00000316433 RPS8P62241 208 aaKnown RBP6.95□□□□□ -1.3
ZNF540-201ENST00000316433 ASIC1P78348 528 aa6.95□□□□□ -1.3
ZNF540-201ENST00000316433 CDK18Q07002 472 aa6.95□□□□□ -1.3
ZNF540-201ENST00000316433 NIPAL4Q0D2K0 466 aa6.95□□□□□ -1.3
ZNF540-201ENST00000316433 ITPK1Q13572 414 aa6.95□□□□□ -1.3
ZNF540-201ENST00000316433 GRAPQ13588 217 aa6.95□□□□□ -1.3
ZNF540-201ENST00000316433 ASIC2Q16515 512 aa6.95□□□□□ -1.3
ZNF540-201ENST00000316433 FAM26FQ5R3K3 315 aa6.95□□□□□ -1.3
ZNF540-201ENST00000316433 KRT79Q5XKE5 535 aa6.95□□□□□ -1.3
ZNF540-201ENST00000316433 TUBA3EQ6PEY2 450 aa6.95□□□□□ -1.3
ZNF540-201ENST00000316433 CCBE1Q6UXH8 406 aaPredicted RBP6.95□□□□□ -1.3
ZNF540-201ENST00000316433 NIPA1Q7RTP0 329 aa6.95□□□□□ -1.3
ZNF540-201ENST00000316433 TMC7Q7Z402 723 aa6.95□□□□□ -1.3
ZNF540-201ENST00000316433 ARPINQ7Z6K5 226 aa6.95□□□□□ -1.3
ZNF540-201ENST00000316433 SLC51BQ86UW2 128 aa6.95□□□□□ -1.3
ZNF540-201ENST00000316433 ZNF410Q86VK4 478 aa6.95□□□□□ -1.3
ZNF540-201ENST00000316433 SYNE4Q8N205 404 aa6.95□□□□□ -1.3
ZNF540-201ENST00000316433 ANKRD13CQ8N6S4 541 aa6.95□□□□□ -1.3
ZNF540-201ENST00000316433 GRAPLQ8TC17 118 aaPredicted RBP6.95□□□□□ -1.3
ZNF540-201ENST00000316433 CHPT1Q8WUD6 406 aa6.95□□□□□ -1.3
ZNF540-201ENST00000316433 RFFLQ8WZ73 363 aa6.95□□□□□ -1.3
ZNF540-201ENST00000316433 HAS1Q92839 578 aa6.95□□□□□ -1.3
ZNF540-201ENST00000316433 CD101Q93033 1021 aa6.95□□□□□ -1.3
ZNF540-201ENST00000316433 BORCS5Q969J3 196 aa6.95□□□□□ -1.3
ZNF540-201ENST00000316433 MCUR1Q96AQ8 359 aa6.95□□□□□ -1.3
ZNF540-201ENST00000316433 SDCCAG3Q96C92 435 aa6.95□□□□□ -1.3
ZNF540-201ENST00000316433 CCDC17Q96LX7 622 aa6.95□□□□□ -1.3
ZNF540-201ENST00000316433 MAGEB18Q96M61 343 aa6.95□□□□□ -1.3
ZNF540-201ENST00000316433 TTC1Q99614 292 aa6.95□□□□□ -1.3
ZNF540-201ENST00000316433 BTBD10Q9BSF8 475 aa6.95□□□□□ -1.3
ZNF540-201ENST00000316433 PITPNM3Q9BZ71 974 aa6.95□□□□□ -1.3
ZNF540-201ENST00000316433 IFT122Q9HBG6 1241 aa6.95□□□□□ -1.3
ZNF540-201ENST00000316433 SAR1AQ9NR31 198 aa6.95□□□□□ -1.3
ZNF540-201ENST00000316433 PLK2Q9NYY3 685 aa6.95□□□□□ -1.3
ZNF540-201ENST00000316433 DNAJB4Q9UDY4 337 aa6.95□□□□□ -1.3
ZNF540-201ENST00000316433 NAGPAQ9UK23 515 aa6.95□□□□□ -1.3
ZNF540-201ENST00000316433 ZSCAN5BA6NJL1 495 aa6.95□□□□□ -1.3
ZNF540-201ENST00000316433 EPHB6O15197 1021 aa6.95□□□□□ -1.3
ZNF540-201ENST00000316433 IDH3BO43837 385 aa6.95□□□□□ -1.3
ZNF540-201ENST00000316433 STAMBPO95630 424 aa6.95□□□□□ -1.3
ZNF540-201ENST00000316433 FTCDO95954 541 aa6.95□□□□□ -1.3
ZNF540-201ENST00000316433 TSHRP16473 764 aa6.95□□□□□ -1.3
ZNF540-201ENST00000316433 CTRB1P17538 263 aa6.95□□□□□ -1.3
ZNF540-201ENST00000316433 VCLP18206 1134 aa6.95□□□□□ -1.3
ZNF540-201ENST00000316433 CDH2P19022 906 aaPredicted RBP6.95□□□□□ -1.3
ZNF540-201ENST00000316433 PTPN7P35236 360 aa6.95□□□□□ -1.3
ZNF540-201ENST00000316433 ADCY8P40145 1251 aa6.95□□□□□ -1.3
ZNF540-201ENST00000316433 RPL26P61254 145 aaKnown RBP6.95□□□□□ -1.3
ZNF540-201ENST00000316433 B2MP61769 119 aa6.95□□□□□ -1.3
ZNF540-201ENST00000316433 KRT76Q01546 638 aa6.95□□□□□ -1.3
ZNF540-201ENST00000316433 ZNF543Q08ER8 600 aa6.95□□□□□ -1.3
ZNF540-201ENST00000316433 ANKRD20A4Q4UJ75 823 aa6.95□□□□□ -1.3
ZNF540-201ENST00000316433 TIGD2Q4W5G0 525 aa6.95□□□□□ -1.3
ZNF540-201ENST00000316433 TAF1BQ53T94 588 aaPredicted RBP6.95□□□□□ -1.3
ZNF540-201ENST00000316433 HERC4Q5GLZ8 1057 aaPredicted RBP6.95□□□□□ -1.3
ZNF540-201ENST00000316433 NXNQ6DKJ4 435 aa6.95□□□□□ -1.3
ZNF540-201ENST00000316433 CTRB2Q6GPI1 263 aa6.95□□□□□ -1.3
ZNF540-201ENST00000316433 DCLRE1AQ6PJP8 1040 aa6.95□□□□□ -1.3
ZNF540-201ENST00000316433 CYP4V2Q6ZWL3 525 aaPredicted RBP6.95□□□□□ -1.3
ZNF540-201ENST00000316433 TRMT10CQ7L0Y3 403 aaKnown RBP6.95□□□□□ -1.3
ZNF540-201ENST00000316433 NET1Q7Z628 596 aaPredicted RBP6.95□□□□□ -1.3
ZNF540-201ENST00000316433 TDRPQ86YL5 185 aa6.95□□□□□ -1.3
ZNF540-201ENST00000316433 C2CD5Q86YS7 1000 aa6.95□□□□□ -1.3
ZNF540-201ENST00000316433 PHF6Q8IWS0 365 aaKnown RBP eCLIP6.95□□□□□ -1.3
ZNF540-201ENST00000316433 HACE1Q8IYU2 909 aa6.95□□□□□ -1.3
ZNF540-201ENST00000316433 SAMD14Q8IZD0 417 aaPredicted RBP6.95□□□□□ -1.3
ZNF540-201ENST00000316433 SPARTQ8N0X7 666 aa6.95□□□□□ -1.3
ZNF540-201ENST00000316433 ANKRD42Q8N9B4 389 aa6.95□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms