RNA–Protein interactions for RNA: ENST00000306042.9

PTPRE-202, Transcript of protein tyrosine phosphatase, receptor type E, humanhuman

TSL 1 (best) BASIC

Gene PTPRE, Length 4,957 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRE-202ENST00000306042 CDH8P55286 799 aa9.7□□□□□ -0.86
PTPRE-202ENST00000306042 KCNA1Q09470 495 aa9.7□□□□□ -0.86
PTPRE-202ENST00000306042 RCOR2Q8IZ40 523 aa9.7□□□□□ -0.86
PTPRE-202ENST00000306042 CARNMT1Q8N4J0 409 aa9.7□□□□□ -0.86
PTPRE-202ENST00000306042 TATDN2Q93075 761 aa9.7□□□□□ -0.86
PTPRE-202ENST00000306042 TSPAN18Q96SJ8 248 aa9.7□□□□□ -0.86
PTPRE-202ENST00000306042 KLHL11Q9NVR0 708 aa9.7□□□□□ -0.86
PTPRE-202ENST00000306042 DOLKQ9UPQ8 538 aa9.7□□□□□ -0.86
PTPRE-202ENST00000306042 A0A1W2PQJ5 194 aa9.7□□□□□ -0.86
PTPRE-202ENST00000306042 LRRIQ3A6PVS8 624 aaPredicted RBP9.7□□□□□ -0.86
PTPRE-202ENST00000306042 SGPL1O95470 568 aa9.7□□□□□ -0.86
PTPRE-202ENST00000306042 CYP11B1P15538 503 aa9.7□□□□□ -0.86
PTPRE-202ENST00000306042 BOLA3Q53S33 107 aa9.7□□□□□ -0.86
PTPRE-202ENST00000306042 FYB2Q5VWT5 728 aa9.7□□□□□ -0.86
PTPRE-202ENST00000306042 TTC23LQ6PF05 361 aa9.7□□□□□ -0.86
PTPRE-202ENST00000306042 CENPUQ71F23 418 aa9.7□□□□□ -0.86
PTPRE-202ENST00000306042 CCDC13Q8IYE1 715 aa9.7□□□□□ -0.86
PTPRE-202ENST00000306042 RSPH1Q8WYR4 309 aa9.7□□□□□ -0.86
PTPRE-202ENST00000306042 CFAP36Q96G28 342 aa9.7□□□□□ -0.86
PTPRE-202ENST00000306042 HHIPL1Q96JK4 782 aa9.7□□□□□ -0.86
PTPRE-202ENST00000306042 ABCF3Q9NUQ8 709 aa9.7□□□□□ -0.86
PTPRE-202ENST00000306042 GTPBP10A4D1E9 387 aaKnown RBP9.7□□□□□ -0.86
PTPRE-202ENST00000306042 CLK2P49760 499 aaKnown RBP9.7□□□□□ -0.86
PTPRE-202ENST00000306042 GJA9P57773 515 aa9.7□□□□□ -0.86
PTPRE-202ENST00000306042 PRAMEP78395 509 aa9.7□□□□□ -0.86
PTPRE-202ENST00000306042 POLD3Q15054 466 aaPredicted RBP9.7□□□□□ -0.86
PTPRE-202ENST00000306042 NAB2Q15742 525 aa9.7□□□□□ -0.86
PTPRE-202ENST00000306042 ACAD10Q6JQN1 1059 aa9.7□□□□□ -0.86
PTPRE-202ENST00000306042 RAB44Q7Z6P3 723 aaPredicted RBP9.7□□□□□ -0.86
PTPRE-202ENST00000306042 DHX33Q9H6R0 707 aaKnown RBP9.7□□□□□ -0.86
PTPRE-202ENST00000306042 MAP3K13O43283 966 aa9.7□□□□□ -0.86
PTPRE-202ENST00000306042 PAPOLAP51003 745 aaKnown RBP9.7□□□□□ -0.86
PTPRE-202ENST00000306042 NCKAP1LP55160 1127 aa9.7□□□□□ -0.86
PTPRE-202ENST00000306042 STARD3Q14849 445 aa9.7□□□□□ -0.86
PTPRE-202ENST00000306042 ELF2Q15723 593 aa9.7□□□□□ -0.86
PTPRE-202ENST00000306042 ZNF618Q5T7W0 954 aa9.7□□□□□ -0.86
PTPRE-202ENST00000306042 TRIM59Q8IWR1 403 aa9.7□□□□□ -0.86
PTPRE-202ENST00000306042 ANKS4BQ8N8V4 417 aa9.7□□□□□ -0.86
PTPRE-202ENST00000306042 FAM76AQ8TAV0 307 aa9.7□□□□□ -0.86
PTPRE-202ENST00000306042 USP33Q8TEY7 942 aa9.7□□□□□ -0.86
PTPRE-202ENST00000306042 PYROXD1Q8WU10 500 aa9.7□□□□□ -0.86
PTPRE-202ENST00000306042 EPB41L5Q9HCM4 733 aa9.7□□□□□ -0.86
PTPRE-202ENST00000306042 GTF3C4Q9UKN8 822 aa9.7□□□□□ -0.86
PTPRE-202ENST00000306042 ARHGAP42A6NI28 874 aa9.69□□□□□ -0.86
PTPRE-202ENST00000306042 SNAI1O95863 264 aaPredicted RBP9.69□□□□□ -0.86
PTPRE-202ENST00000306042 SP100P23497 879 aaPredicted RBP9.69□□□□□ -0.86
PTPRE-202ENST00000306042 KPNA2P52292 529 aaKnown RBP9.69□□□□□ -0.86
PTPRE-202ENST00000306042 EIF3EP60228 445 aaKnown RBP9.69□□□□□ -0.86
PTPRE-202ENST00000306042 PURAQ00577 322 aaKnown RBP9.69□□□□□ -0.86
PTPRE-202ENST00000306042 E2F4Q16254 413 aa9.69□□□□□ -0.86
PTPRE-202ENST00000306042 KDELC2Q7Z4H8 507 aa9.69□□□□□ -0.86
PTPRE-202ENST00000306042 MCUQ8NE86 351 aa9.69□□□□□ -0.86
PTPRE-202ENST00000306042 XPO6Q96QU8 1125 aaKnown RBP9.69□□□□□ -0.86
PTPRE-202ENST00000306042 C11orf84Q9BUA3 381 aaPredicted RBP9.69□□□□□ -0.86
PTPRE-202ENST00000306042 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP9.69□□□□□ -0.86
PTPRE-202ENST00000306042 SLC25A13Q9UJS0 675 aa9.69□□□□□ -0.86
PTPRE-202ENST00000306042 SPEF2Q9C093 1822 aa9.69□□□□□ -0.86
PTPRE-202ENST00000306042 ATMINO43313 823 aaPredicted RBP9.69□□□□□ -0.86
PTPRE-202ENST00000306042 ARIH2O95376 493 aa9.69□□□□□ -0.86
PTPRE-202ENST00000306042 LSM8O95777 96 aaKnown RBP9.69□□□□□ -0.86
PTPRE-202ENST00000306042 ASS1P00966 412 aaKnown RBP9.69□□□□□ -0.86
PTPRE-202ENST00000306042 CSH1P0DML2 217 aa9.69□□□□□ -0.86
PTPRE-202ENST00000306042 CSH2P0DML3 217 aa9.69□□□□□ -0.86
PTPRE-202ENST00000306042 PTPN1P18031 435 aaKnown RBP9.69□□□□□ -0.86
PTPRE-202ENST00000306042 OR1D2P34982 312 aa9.69□□□□□ -0.86
PTPRE-202ENST00000306042 TNFSF9P41273 254 aa9.69□□□□□ -0.86
PTPRE-202ENST00000306042 FXR1P51114 621 aaKnown RBP eCLIP9.69□□□□□ -0.86
PTPRE-202ENST00000306042 PCGF5Q86SE9 256 aa9.69□□□□□ -0.86
PTPRE-202ENST00000306042 OR6P1Q8NGX9 317 aa9.69□□□□□ -0.86
PTPRE-202ENST00000306042 SYN2Q92777 582 aaPredicted RBP9.69□□□□□ -0.86
PTPRE-202ENST00000306042 N4BP2L2Q92802 583 aaPredicted RBP9.69□□□□□ -0.86
PTPRE-202ENST00000306042 TNFRSF25Q93038 417 aa9.69□□□□□ -0.86
PTPRE-202ENST00000306042 CLGNO14967 610 aa9.69□□□□□ -0.86
PTPRE-202ENST00000306042 MMEP08473 750 aa9.69□□□□□ -0.86
PTPRE-202ENST00000306042 ETFBP38117 255 aa9.69□□□□□ -0.86
PTPRE-202ENST00000306042 MSH2P43246 934 aa9.69□□□□□ -0.86
PTPRE-202ENST00000306042 GCNT1Q02742 428 aa9.69□□□□□ -0.86
PTPRE-202ENST00000306042 ADIGQ0VDE8 80 aa9.69□□□□□ -0.86
PTPRE-202ENST00000306042 DENND5BQ6ZUT9 1274 aa9.69□□□□□ -0.86
PTPRE-202ENST00000306042 TAS2R42Q7RTR8 314 aa9.69□□□□□ -0.86
PTPRE-202ENST00000306042 UNC93AQ86WB7 457 aa9.69□□□□□ -0.86
PTPRE-202ENST00000306042 TTC30BQ8N4P2 665 aa9.69□□□□□ -0.86
PTPRE-202ENST00000306042 UBE2Q2Q8WVN8 375 aa9.69□□□□□ -0.86
PTPRE-202ENST00000306042 EDEM1Q92611 657 aa9.69□□□□□ -0.86
PTPRE-202ENST00000306042 ZBTB10Q96DT7 871 aa9.69□□□□□ -0.86
PTPRE-202ENST00000306042 CHP1Q99653 195 aa9.69□□□□□ -0.86
PTPRE-202ENST00000306042 VPS28Q9UK41 221 aa9.69□□□□□ -0.86
PTPRE-202ENST00000306042 CDH9Q9ULB4 789 aa9.69□□□□□ -0.86
PTPRE-202ENST00000306042 MRPS17Q9Y2R5 130 aaKnown RBP9.69□□□□□ -0.86
PTPRE-202ENST00000306042 COL2A1P02458 1487 aaPredicted RBP9.69□□□□□ -0.86
PTPRE-202ENST00000306042 ABHD14A-ACY1A0A1B0GW23 586 aa9.68□□□□□ -0.86
PTPRE-202ENST00000306042 C3orf70A6NLC5 250 aaPredicted RBP9.68□□□□□ -0.86
PTPRE-202ENST00000306042 ZNF862O60290 1169 aa9.68□□□□□ -0.86
PTPRE-202ENST00000306042 GMNNO75496 209 aa9.68□□□□□ -0.86
PTPRE-202ENST00000306042 CASP5P51878 434 aa9.68□□□□□ -0.86
PTPRE-202ENST00000306042 ARL4CP56559 192 aa9.68□□□□□ -0.86
PTPRE-202ENST00000306042 PDK1Q15118 436 aa9.68□□□□□ -0.86
PTPRE-202ENST00000306042 ADGRG1Q9Y653 693 aa9.68□□□□□ -0.86
PTPRE-202ENST00000306042 OR6C75A6NL08 312 aa9.68□□□□□ -0.86
PTPRE-202ENST00000306042 ZNF197O14709 1029 aa9.68□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms