RNA–Protein interactions for RNA: ENST00000297405.9

CSMD3-201, Transcript of CUB and Sushi multiple domains 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSMD3, Length 13,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-201ENST00000297405 SLC9A3P48764 834 aa5.02□□□□□ -1.61
CSMD3-201ENST00000297405 SMCO1Q147U7 214 aa5.02□□□□□ -1.61
CSMD3-201ENST00000297405 ZMYND11Q15326 602 aa5.02□□□□□ -1.61
CSMD3-201ENST00000297405 EFHC1Q5JVL4 640 aa5.02□□□□□ -1.61
CSMD3-201ENST00000297405 CWF19L1Q69YN2 538 aaKnown RBP5.02□□□□□ -1.61
CSMD3-201ENST00000297405 FUKQ8N0W3 1084 aa5.02□□□□□ -1.61
CSMD3-201ENST00000297405 RAB2BQ8WUD1 216 aa5.02□□□□□ -1.61
CSMD3-201ENST00000297405 MYDGFQ969H8 173 aa5.02□□□□□ -1.61
CSMD3-201ENST00000297405 MAGEB10Q96LZ2 347 aaPredicted RBP5.02□□□□□ -1.61
CSMD3-201ENST00000297405 KLHL32Q96NJ5 620 aa5.02□□□□□ -1.61
CSMD3-201ENST00000297405 BTBD9Q96Q07 612 aa5.02□□□□□ -1.61
CSMD3-201ENST00000297405 TIPINQ9BVW5 301 aa5.02□□□□□ -1.61
CSMD3-201ENST00000297405 WDR11Q9BZH6 1224 aa5.02□□□□□ -1.61
CSMD3-201ENST00000297405 MAP3K2Q9Y2U5 619 aa5.02□□□□□ -1.61
CSMD3-201ENST00000297405 NCKAP5LQ9HCH0 1330 aa5.02□□□□□ -1.61
CSMD3-201ENST00000297405 NAV1Q8NEY1 1877 aa5.02□□□□□ -1.61
CSMD3-201ENST00000297405 GNPATO15228 680 aa5.02□□□□□ -1.61
CSMD3-201ENST00000297405 RECQL5O94762 991 aaPredicted RBP5.02□□□□□ -1.61
CSMD3-201ENST00000297405 LDHAP00338 332 aaKnown RBP5.02□□□□□ -1.61
CSMD3-201ENST00000297405 AP1S1P61966 158 aa5.02□□□□□ -1.61
CSMD3-201ENST00000297405 GNA13Q14344 377 aa5.02□□□□□ -1.61
CSMD3-201ENST00000297405 RESP18Q5W5W9 173 aa5.02□□□□□ -1.61
CSMD3-201ENST00000297405 MIGA2Q7L4E1 593 aa5.02□□□□□ -1.61
CSMD3-201ENST00000297405 DEPDC4Q8N2C3 294 aa5.02□□□□□ -1.61
CSMD3-201ENST00000297405 ZNF786Q8N393 782 aa5.02□□□□□ -1.61
CSMD3-201ENST00000297405 SFRP1Q8N474 314 aa5.02□□□□□ -1.61
CSMD3-201ENST00000297405 ZFP42Q96MM3 310 aa5.02□□□□□ -1.61
CSMD3-201ENST00000297405 SLITRK2Q9H156 845 aa5.02□□□□□ -1.61
CSMD3-201ENST00000297405 ARMC7Q9H6L4 198 aa5.02□□□□□ -1.61
CSMD3-201ENST00000297405 MANSC1Q9H8J5 431 aa5.02□□□□□ -1.61
CSMD3-201ENST00000297405 CLK4Q9HAZ1 481 aaKnown RBP5.02□□□□□ -1.61
CSMD3-201ENST00000297405 NFKBIL1Q9UBC1 381 aaPredicted RBP5.02□□□□□ -1.61
CSMD3-201ENST00000297405 ZNF221Q9UK13 617 aa5.02□□□□□ -1.61
CSMD3-201ENST00000297405 ABCG2Q9UNQ0 655 aa5.02□□□□□ -1.61
CSMD3-201ENST00000297405 SPEF1Q9Y4P9 236 aa5.02□□□□□ -1.61
CSMD3-201ENST00000297405 KDRP35968 1356 aa5.02□□□□□ -1.61
CSMD3-201ENST00000297405 CENPBD1B2RD01 187 aa5.02□□□□□ -1.61
CSMD3-201ENST00000297405 TULP2O00295 520 aa5.02□□□□□ -1.61
CSMD3-201ENST00000297405 CCNE1P24864 410 aa5.02□□□□□ -1.61
CSMD3-201ENST00000297405 EPHB1P54762 984 aa5.02□□□□□ -1.61
CSMD3-201ENST00000297405 RBL2Q08999 1139 aa5.02□□□□□ -1.61
CSMD3-201ENST00000297405 QPRTQ15274 297 aa5.02□□□□□ -1.61
CSMD3-201ENST00000297405 CYP4Z1Q86W10 505 aa5.02□□□□□ -1.61
CSMD3-201ENST00000297405 ZDHHC13Q8IUH4 622 aa5.02□□□□□ -1.61
CSMD3-201ENST00000297405 ZBTB38Q8NAP3 1195 aaPredicted RBP5.02□□□□□ -1.61
CSMD3-201ENST00000297405 TMEM79Q9BSE2 394 aa5.02□□□□□ -1.61
CSMD3-201ENST00000297405 CDK19Q9BWU1 502 aa5.02□□□□□ -1.61
CSMD3-201ENST00000297405 PRDM16Q9HAZ2 1276 aa5.02□□□□□ -1.61
CSMD3-201ENST00000297405 NLRC4Q9NPP4 1024 aa5.02□□□□□ -1.61
CSMD3-201ENST00000297405 DCTN4Q9UJW0 460 aa5.02□□□□□ -1.61
CSMD3-201ENST00000297405 RAB26Q9ULW5 256 aa5.02□□□□□ -1.61
CSMD3-201ENST00000297405 ZSCAN9O15535 394 aaPredicted RBP5.02□□□□□ -1.61
CSMD3-201ENST00000297405 TMCC2O75069 709 aa5.02□□□□□ -1.61
CSMD3-201ENST00000297405 TYK2P29597 1187 aa5.02□□□□□ -1.61
CSMD3-201ENST00000297405 C2orf54Q08AI8 447 aa5.02□□□□□ -1.61
CSMD3-201ENST00000297405 EDRF1Q3B7T1 1238 aa5.02□□□□□ -1.61
CSMD3-201ENST00000297405 ADSSL1Q8N142 457 aa5.02□□□□□ -1.61
CSMD3-201ENST00000297405 TSPAN14Q8NG11 270 aa5.02□□□□□ -1.61
CSMD3-201ENST00000297405 PCDHB8Q9UN66 801 aa5.02□□□□□ -1.61
CSMD3-201ENST00000297405 TOM1O60784 492 aa5.02□□□□□ -1.61
CSMD3-201ENST00000297405 SNRPAP09012 282 aaKnown RBP5.02□□□□□ -1.61
CSMD3-201ENST00000297405 CENPCQ03188 943 aa5.02□□□□□ -1.61
CSMD3-201ENST00000297405 NYAP1Q6ZVC0 841 aa5.02□□□□□ -1.61
CSMD3-201ENST00000297405 STOX1Q6ZVD7 989 aa5.02□□□□□ -1.61
CSMD3-201ENST00000297405 LRRC20Q8TCA0 184 aa5.02□□□□□ -1.61
CSMD3-201ENST00000297405 ULK4Q96C45 1275 aa5.02□□□□□ -1.61
CSMD3-201ENST00000297405 UNKLQ9H9P5 680 aaKnown RBP5.02□□□□□ -1.61
CSMD3-201ENST00000297405 PLK2Q9NYY3 685 aa5.02□□□□□ -1.61
CSMD3-201ENST00000297405 WDR35Q9P2L0 1181 aa5.02□□□□□ -1.61
CSMD3-201ENST00000297405 TMA7Q9Y2S6 64 aaKnown RBP5.02□□□□□ -1.61
CSMD3-201ENST00000297405 DHX15O43143 795 aaKnown RBP5.02□□□□□ -1.61
CSMD3-201ENST00000297405 TNFRSF21O75509 655 aa5.02□□□□□ -1.61
CSMD3-201ENST00000297405 SLC4A1P02730 911 aa5.02□□□□□ -1.61
CSMD3-201ENST00000297405 POLR2FP61218 127 aaKnown RBP5.02□□□□□ -1.61
CSMD3-201ENST00000297405 ZCCHC12Q6PEW1 402 aa5.02□□□□□ -1.61
CSMD3-201ENST00000297405 FAM47EQ6ZV65 393 aa5.02□□□□□ -1.61
CSMD3-201ENST00000297405 C11orf74Q86VG3 221 aa5.02□□□□□ -1.61
CSMD3-201ENST00000297405 SLC22A9Q8IVM8 553 aa5.02□□□□□ -1.61
CSMD3-201ENST00000297405 C8orf59Q8N0T1 100 aaPredicted RBP5.02□□□□□ -1.61
CSMD3-201ENST00000297405 FCGR1BQ92637 280 aa5.02□□□□□ -1.61
CSMD3-201ENST00000297405 CDH19Q9H159 772 aa5.02□□□□□ -1.61
CSMD3-201ENST00000297405 NPHS2Q9NP85 383 aa5.02□□□□□ -1.61
CSMD3-201ENST00000297405 IP6K2Q9UHH9 426 aa5.02□□□□□ -1.61
CSMD3-201ENST00000297405 C3orf18Q9UK00 162 aa5.02□□□□□ -1.61
CSMD3-201ENST00000297405 WDR17Q8IZU2 1322 aa5.01□□□□□ -1.61
CSMD3-201ENST00000297405 SIN3BO75182 1162 aa5.01□□□□□ -1.61
CSMD3-201ENST00000297405 CHN1P15882 459 aa5.01□□□□□ -1.61
CSMD3-201ENST00000297405 OASLQ15646 514 aaKnown RBP5.01□□□□□ -1.61
CSMD3-201ENST00000297405 FAM83EQ2M2I3 478 aa5.01□□□□□ -1.61
CSMD3-201ENST00000297405 MROH9Q5TGP6 573 aa5.01□□□□□ -1.61
CSMD3-201ENST00000297405 SNX32Q86XE0 403 aa5.01□□□□□ -1.61
CSMD3-201ENST00000297405 ERP44Q9BS26 406 aa5.01□□□□□ -1.61
CSMD3-201ENST00000297405 COMMD8Q9NX08 183 aa5.01□□□□□ -1.61
CSMD3-201ENST00000297405 TMEM9Q9P0T7 183 aa5.01□□□□□ -1.61
CSMD3-201ENST00000297405 ADGRG1Q9Y653 693 aa5.01□□□□□ -1.61
CSMD3-201ENST00000297405 ZCCHC18P0CG32 403 aa5.01□□□□□ -1.61
CSMD3-201ENST00000297405 CD19P15391 556 aa5.01□□□□□ -1.61
CSMD3-201ENST00000297405 SPRP35270 261 aaPredicted RBP5.01□□□□□ -1.61
CSMD3-201ENST00000297405 LIFRP42702 1097 aa5.01□□□□□ -1.61
CSMD3-201ENST00000297405 MAGEA3P43357 314 aa5.01□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms