RNA–Protein interactions for RNA: ENST00000273317.4

LIMD1-201, Transcript of LIM domains containing 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIMD1, Length 11,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1-201ENST00000273317 PPP2R3CQ969Q6 453 aa8.28□□□□□ -1.08
LIMD1-201ENST00000273317 DNAJC7Q99615 494 aa8.28□□□□□ -1.08
LIMD1-201ENST00000273317 CAMSAP3Q9P1Y5 1249 aaPredicted RBP8.28□□□□□ -1.08
LIMD1-201ENST00000273317 PGK2P07205 417 aa8.28□□□□□ -1.08
LIMD1-201ENST00000273317 TTLL9Q3SXZ7 439 aa8.28□□□□□ -1.08
LIMD1-201ENST00000273317 SUSD4Q5VX71 490 aa8.28□□□□□ -1.08
LIMD1-201ENST00000273317 PPP1R36Q96LQ0 422 aa8.28□□□□□ -1.08
LIMD1-201ENST00000273317 PARVBQ9HBI1 364 aa8.28□□□□□ -1.08
LIMD1-201ENST00000273317 KLHL11Q9NVR0 708 aa8.28□□□□□ -1.08
LIMD1-201ENST00000273317 FAM153AQ9UHL3 310 aa8.28□□□□□ -1.08
LIMD1-201ENST00000273317 MINPP1Q9UNW1 487 aa8.28□□□□□ -1.08
LIMD1-201ENST00000273317 TKTP29401 623 aaKnown RBP8.28□□□□□ -1.08
LIMD1-201ENST00000273317 HSD17B3P37058 310 aa8.28□□□□□ -1.08
LIMD1-201ENST00000273317 AKIRIN2Q53H80 203 aa8.28□□□□□ -1.08
LIMD1-201ENST00000273317 HES6Q96HZ4 224 aa8.28□□□□□ -1.08
LIMD1-201ENST00000273317 OLFM1Q99784 485 aa8.28□□□□□ -1.08
LIMD1-201ENST00000273317 C17orf75Q9HAS0 396 aa8.28□□□□□ -1.08
LIMD1-201ENST00000273317 PAPOLBQ9NRJ5 636 aaKnown RBP8.28□□□□□ -1.08
LIMD1-201ENST00000273317 TMEM51Q9NW97 253 aa8.28□□□□□ -1.08
LIMD1-201ENST00000273317 SDR42E2A6NKP2 422 aa8.28□□□□□ -1.08
LIMD1-201ENST00000273317 GSG1L2A8MUP6 293 aa8.28□□□□□ -1.08
LIMD1-201ENST00000273317 H7C0S8 307 aa8.28□□□□□ -1.08
LIMD1-201ENST00000273317 NFIBO00712 420 aa8.28□□□□□ -1.08
LIMD1-201ENST00000273317 GAS2O43903 313 aaKnown RBP8.28□□□□□ -1.08
LIMD1-201ENST00000273317 TBL3Q12788 808 aaKnown RBP8.28□□□□□ -1.08
LIMD1-201ENST00000273317 C12orf60Q5U649 245 aa8.28□□□□□ -1.08
LIMD1-201ENST00000273317 WDR93Q6P2C0 686 aa8.28□□□□□ -1.08
LIMD1-201ENST00000273317 DCP1BQ8IZD4 617 aaKnown RBP8.28□□□□□ -1.08
LIMD1-201ENST00000273317 ZNF507Q8TCN5 953 aa8.28□□□□□ -1.08
LIMD1-201ENST00000273317 REEP2Q9BRK0 252 aa8.28□□□□□ -1.08
LIMD1-201ENST00000273317 GLRA3O75311 464 aa8.28□□□□□ -1.08
LIMD1-201ENST00000273317 PDE5AO76074 875 aa8.28□□□□□ -1.08
LIMD1-201ENST00000273317 PTRHD1Q6GMV3 140 aaKnown RBP8.28□□□□□ -1.08
LIMD1-201ENST00000273317 NYAP1Q6ZVC0 841 aa8.28□□□□□ -1.08
LIMD1-201ENST00000273317 ZNF333Q96JL9 665 aa8.28□□□□□ -1.08
LIMD1-201ENST00000273317 MUC3BQ9H195 1237 aa8.28□□□□□ -1.08
LIMD1-201ENST00000273317 TUBE1Q9UJT0 475 aa8.28□□□□□ -1.08
LIMD1-201ENST00000273317 ZDHHC9Q9Y397 364 aa8.28□□□□□ -1.08
LIMD1-201ENST00000273317 MOCS2O96007 188 aaPredicted RBP8.28□□□□□ -1.08
LIMD1-201ENST00000273317 CPB1P15086 417 aa8.28□□□□□ -1.08
LIMD1-201ENST00000273317 COMTP21964 271 aa8.28□□□□□ -1.08
LIMD1-201ENST00000273317 NUDT2P50583 147 aa8.28□□□□□ -1.08
LIMD1-201ENST00000273317 MAPK7Q13164 816 aa8.28□□□□□ -1.08
LIMD1-201ENST00000273317 BOLA3Q53S33 107 aa8.28□□□□□ -1.08
LIMD1-201ENST00000273317 HDDC2Q7Z4H3 204 aa8.28□□□□□ -1.08
LIMD1-201ENST00000273317 RNF149Q8NC42 400 aa8.28□□□□□ -1.08
LIMD1-201ENST00000273317 INPP5DQ92835 1189 aa8.28□□□□□ -1.08
LIMD1-201ENST00000273317 WRNIP1Q96S55 665 aa8.28□□□□□ -1.08
LIMD1-201ENST00000273317 PABPC3Q9H361 631 aaKnown RBP8.28□□□□□ -1.08
LIMD1-201ENST00000273317 PIDD1Q9HB75 910 aa8.28□□□□□ -1.08
LIMD1-201ENST00000273317 UBTFL6P0CB48 400 aaPredicted RBP8.28□□□□□ -1.08
LIMD1-201ENST00000273317 FXR2P51116 673 aaKnown RBP eCLIP8.28□□□□□ -1.084e-6■■□□□ 13.5
LIMD1-201ENST00000273317 ST8SIA6P61647 398 aa8.28□□□□□ -1.08
LIMD1-201ENST00000273317 WDR72Q3MJ13 1102 aa8.28□□□□□ -1.08
LIMD1-201ENST00000273317 SLC22A9Q8IVM8 553 aa8.28□□□□□ -1.08
LIMD1-201ENST00000273317 CDK5RAP1Q96SZ6 601 aaKnown RBP8.28□□□□□ -1.08
LIMD1-201ENST00000273317 ANKRD6Q9Y2G4 727 aa8.28□□□□□ -1.08
LIMD1-201ENST00000273317 VPS4BO75351 444 aa8.28□□□□□ -1.08
LIMD1-201ENST00000273317 TDP2O95551 362 aa8.28□□□□□ -1.08
LIMD1-201ENST00000273317 PSMC6P62333 389 aa8.28□□□□□ -1.08
LIMD1-201ENST00000273317 KRT78Q8N1N4 520 aa8.28□□□□□ -1.08
LIMD1-201ENST00000273317 TPCN2Q8NHX9 752 aa8.28□□□□□ -1.08
LIMD1-201ENST00000273317 CINPQ9BW66 212 aaPredicted RBP8.28□□□□□ -1.08
LIMD1-201ENST00000273317 DCLRE1BQ9H816 532 aa8.28□□□□□ -1.08
LIMD1-201ENST00000273317 DBR1Q9UK59 544 aaKnown RBP8.28□□□□□ -1.08
LIMD1-201ENST00000273317 KCNH4Q9UQ05 1017 aa8.28□□□□□ -1.08
LIMD1-201ENST00000273317 SLC30A1Q9Y6M5 507 aa8.28□□□□□ -1.08
LIMD1-201ENST00000273317 ZC3H11AO75152 810 aaKnown RBP eCLIP8.28□□□□□ -1.08
LIMD1-201ENST00000273317 TALDO1P37837 337 aa8.28□□□□□ -1.08
LIMD1-201ENST00000273317 CHRNB3Q05901 458 aa8.28□□□□□ -1.08
LIMD1-201ENST00000273317 ZNF543Q08ER8 600 aa8.28□□□□□ -1.08
LIMD1-201ENST00000273317 TRIM63Q969Q1 353 aa8.28□□□□□ -1.08
LIMD1-201ENST00000273317 ECSITQ9BQ95 431 aa8.28□□□□□ -1.08
LIMD1-201ENST00000273317 EXOSC4Q9NPD3 245 aaKnown RBP8.28□□□□□ -1.08
LIMD1-201ENST00000273317 ADGRA2Q96PE1 1338 aa8.28□□□□□ -1.08
LIMD1-201ENST00000273317 TRIM13O60858 407 aa8.27□□□□□ -1.08
LIMD1-201ENST00000273317 CYP2C8P10632 490 aa8.27□□□□□ -1.08
LIMD1-201ENST00000273317 STIP1P31948 543 aaKnown RBP8.27□□□□□ -1.08
LIMD1-201ENST00000273317 PRKCQQ04759 706 aa8.27□□□□□ -1.08
LIMD1-201ENST00000273317 CYP51A1Q16850 503 aa8.27□□□□□ -1.08
LIMD1-201ENST00000273317 ZCWPW2Q504Y3 356 aa8.27□□□□□ -1.08
LIMD1-201ENST00000273317 IKBIPQ70UQ0 350 aa8.27□□□□□ -1.08
LIMD1-201ENST00000273317 CYP4Z2PQ8N1L4 340 aa8.27□□□□□ -1.08
LIMD1-201ENST00000273317 VPS33AQ96AX1 596 aa8.27□□□□□ -1.08
LIMD1-201ENST00000273317 CATSPER2Q96P56 530 aa8.27□□□□□ -1.08
LIMD1-201ENST00000273317 SLC7A5P2Q9GIP4 190 aa8.27□□□□□ -1.08
LIMD1-201ENST00000273317 ABT1Q9ULW3 272 aaKnown RBP8.27□□□□□ -1.08
LIMD1-201ENST00000273317 TRIM49D1C9J1S8 452 aa8.27□□□□□ -1.08
LIMD1-201ENST00000273317 RPS6KA4O75676 772 aa8.27□□□□□ -1.08
LIMD1-201ENST00000273317 LSM8O95777 96 aaKnown RBP8.27□□□□□ -1.08
LIMD1-201ENST00000273317 RGS2P41220 211 aa8.27□□□□□ -1.08
LIMD1-201ENST00000273317 C16orf72Q14CZ0 275 aa8.27□□□□□ -1.08
LIMD1-201ENST00000273317 ZNF786Q8N393 782 aa8.27□□□□□ -1.08
LIMD1-201ENST00000273317 STAU2Q9NUL3 570 aaKnown RBP eCLIP8.27□□□□□ -1.08
LIMD1-201ENST00000273317 RGL1Q9NZL6 768 aa8.27□□□□□ -1.08
LIMD1-201ENST00000273317 DRG1Q9Y295 367 aaKnown RBP8.27□□□□□ -1.08
LIMD1-201ENST00000273317 TSC22D2O75157 780 aa8.27□□□□□ -1.09
LIMD1-201ENST00000273317 MTA1Q13330 715 aa8.27□□□□□ -1.09
LIMD1-201ENST00000273317 MTF1Q14872 753 aa8.27□□□□□ -1.09
LIMD1-201ENST00000273317 BTN2A2Q8WVV5 523 aa8.27□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms