RNA–Protein interactions for RNA: ENST00000273062.6

CTDSP1-201, Transcript of CTD small phosphatase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CTDSP1, Length 2,638 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTDSP1-201ENST00000273062 MEI4A8MW99 385 aa16.48■□□□□ 0.23
CTDSP1-201ENST00000273062 TCP10L2B9ZVM9 353 aa16.48■□□□□ 0.23
CTDSP1-201ENST00000273062 ADCY6O43306 1168 aa16.48■□□□□ 0.23
CTDSP1-201ENST00000273062 AP1G1O43747 822 aa16.48■□□□□ 0.23
CTDSP1-201ENST00000273062 RAD17O75943 681 aa16.48■□□□□ 0.23
CTDSP1-201ENST00000273062 GH2P01242 217 aa16.48■□□□□ 0.23
CTDSP1-201ENST00000273062 TMEM253P0C7T8 217 aa16.48■□□□□ 0.23
CTDSP1-201ENST00000273062 CDK16Q00536 496 aa16.48■□□□□ 0.23
CTDSP1-201ENST00000273062 C16orf87Q6PH81 154 aa16.48■□□□□ 0.23
CTDSP1-201ENST00000273062 VPS36Q86VN1 386 aa16.48■□□□□ 0.23
CTDSP1-201ENST00000273062 CDAN1Q8IWY9 1227 aa16.48■□□□□ 0.23
CTDSP1-201ENST00000273062 ZNF276Q8N554 614 aa16.48■□□□□ 0.23
CTDSP1-201ENST00000273062 CCDC110Q8TBZ0 833 aa16.48■□□□□ 0.23
CTDSP1-201ENST00000273062 SNX29Q8TEQ0 813 aa16.48■□□□□ 0.23
CTDSP1-201ENST00000273062 CALML4Q96GE6 196 aa16.48■□□□□ 0.23
CTDSP1-201ENST00000273062 ZSWIM1Q9BR11 485 aa16.48■□□□□ 0.23
CTDSP1-201ENST00000273062 SEPT11Q9NVA2 429 aaKnown RBP16.48■□□□□ 0.23
CTDSP1-201ENST00000273062 CEPT1Q9Y6K0 416 aa16.48■□□□□ 0.23
CTDSP1-201ENST00000273062 A0A1W2PQ67 120 aa16.47■□□□□ 0.23
CTDSP1-201ENST00000273062 TM7SF2O76062 418 aa16.47■□□□□ 0.23
CTDSP1-201ENST00000273062 FXR2P51116 673 aaKnown RBP eCLIP16.47■□□□□ 0.23
CTDSP1-201ENST00000273062 ABCB5Q2M3G0 1257 aa16.47■□□□□ 0.23
CTDSP1-201ENST00000273062 TMCO4Q5TGY1 634 aa16.47■□□□□ 0.23
CTDSP1-201ENST00000273062 IYDQ6PHW0 289 aa16.47■□□□□ 0.23
CTDSP1-201ENST00000273062 PACS1Q6VY07 963 aa16.47■□□□□ 0.23
CTDSP1-201ENST00000273062 IFNLR1Q8IU57 520 aaPredicted RBP16.47■□□□□ 0.23
CTDSP1-201ENST00000273062 CPNE9Q8IYJ1 553 aa16.47■□□□□ 0.23
CTDSP1-201ENST00000273062 HIPK4Q8NE63 616 aa16.47■□□□□ 0.23
CTDSP1-201ENST00000273062 CCT7Q99832 543 aa16.47■□□□□ 0.23
CTDSP1-201ENST00000273062 NUP85Q9BW27 656 aa16.47■□□□□ 0.23
CTDSP1-201ENST00000273062 MAK16Q9BXY0 300 aaKnown RBP16.47■□□□□ 0.23
CTDSP1-201ENST00000273062 NOX1Q9Y5S8 564 aa16.47■□□□□ 0.23
CTDSP1-201ENST00000273062 EXOC1LA0A1B0GW35 172 aa16.47■□□□□ 0.23
CTDSP1-201ENST00000273062 F5H6K3 240 aa16.47■□□□□ 0.23
CTDSP1-201ENST00000273062 MATN2O00339 956 aa16.47■□□□□ 0.23
CTDSP1-201ENST00000273062 TYROBPO43914 113 aa16.47■□□□□ 0.23
CTDSP1-201ENST00000273062 CIB2O75838 187 aa16.47■□□□□ 0.23
CTDSP1-201ENST00000273062 STAMBPO95630 424 aa16.47■□□□□ 0.23
CTDSP1-201ENST00000273062 HMGB2P26583 209 aaKnown RBP16.47■□□□□ 0.23
CTDSP1-201ENST00000273062 TRIP10Q15642 601 aa16.47■□□□□ 0.23
CTDSP1-201ENST00000273062 CYP1B1Q16678 543 aa16.47■□□□□ 0.23
CTDSP1-201ENST00000273062 DCAF17Q5H9S7 520 aaPredicted RBP16.47■□□□□ 0.23
CTDSP1-201ENST00000273062 METTL21CQ5VZV1 264 aa16.47■□□□□ 0.23
CTDSP1-201ENST00000273062 CCDC127Q96BQ5 260 aa16.47■□□□□ 0.23
CTDSP1-201ENST00000273062 CAMKK2Q96RR4 588 aa16.47■□□□□ 0.23
CTDSP1-201ENST00000273062 CSRNP1Q96S65 589 aa16.47■□□□□ 0.23
CTDSP1-201ENST00000273062 PRPF18Q99633 342 aaKnown RBP16.47■□□□□ 0.23
CTDSP1-201ENST00000273062 WHRNQ9P202 907 aa16.47■□□□□ 0.23
CTDSP1-201ENST00000273062 RGS17Q9UGC6 210 aaPredicted RBP16.47■□□□□ 0.23
CTDSP1-201ENST00000273062 COQ6Q9Y2Z9 468 aa16.47■□□□□ 0.23
CTDSP1-201ENST00000273062 C10orf71Q711Q0 1435 aa16.46■□□□□ 0.23
CTDSP1-201ENST00000273062 DCAF8L1A6NGE4 600 aa16.46■□□□□ 0.23
CTDSP1-201ENST00000273062 CBFA2T3O75081 653 aa16.46■□□□□ 0.23
CTDSP1-201ENST00000273062 ARL4CP56559 192 aa16.46■□□□□ 0.23
CTDSP1-201ENST00000273062 RASA2Q15283 850 aa16.46■□□□□ 0.23
CTDSP1-201ENST00000273062 NEPROQ6NW34 567 aa16.46■□□□□ 0.23
CTDSP1-201ENST00000273062 PPP1R18Q6NYC8 613 aa16.46■□□□□ 0.23
CTDSP1-201ENST00000273062 RNF207Q6ZRF8 634 aa16.46■□□□□ 0.23
CTDSP1-201ENST00000273062 SLC13A5Q86YT5 568 aaPredicted RBP16.46■□□□□ 0.23
CTDSP1-201ENST00000273062 TMIGD2Q96BF3 282 aa16.46■□□□□ 0.23
CTDSP1-201ENST00000273062 BTBD6Q96KE9 485 aa16.46■□□□□ 0.23
CTDSP1-201ENST00000273062 MRIQ9BWK5 157 aa16.46■□□□□ 0.23
CTDSP1-201ENST00000273062 CHST7Q9NS84 486 aa16.46■□□□□ 0.23
CTDSP1-201ENST00000273062 TRNAU1APQ9NX07 287 aaKnown RBP16.46■□□□□ 0.23
CTDSP1-201ENST00000273062 NYAP2Q9P242 653 aa16.46■□□□□ 0.23
CTDSP1-201ENST00000273062 ITGB1BP2Q9UKP3 347 aa16.46■□□□□ 0.23
CTDSP1-201ENST00000273062 SCAF8Q9UPN6 1271 aaKnown RBP16.46■□□□□ 0.23
CTDSP1-201ENST00000273062 ATF5Q9Y2D1 282 aaPredicted RBP16.46■□□□□ 0.23
CTDSP1-201ENST00000273062 COL4A5P29400 1685 aa16.46■□□□□ 0.22
CTDSP1-201ENST00000273062 NDUFB10O96000 172 aa16.46■□□□□ 0.22
CTDSP1-201ENST00000273062 C6orf222P0C671 652 aaPredicted RBP16.46■□□□□ 0.22
CTDSP1-201ENST00000273062 COMTP21964 271 aa16.46■□□□□ 0.22
CTDSP1-201ENST00000273062 RRM1P23921 792 aa16.46■□□□□ 0.22
CTDSP1-201ENST00000273062 FKBP1AP62942 108 aaKnown RBP16.46■□□□□ 0.22
CTDSP1-201ENST00000273062 MYBPC1Q00872 1141 aa16.46■□□□□ 0.22
CTDSP1-201ENST00000273062 ADRM1Q16186 407 aa16.46■□□□□ 0.22
CTDSP1-201ENST00000273062 DCAF6Q58WW2 860 aa16.46■□□□□ 0.22
CTDSP1-201ENST00000273062 DDX51Q8N8A6 666 aaKnown RBP eCLIP16.46■□□□□ 0.22
CTDSP1-201ENST00000273062 ZNF398Q8TD17 642 aa16.46■□□□□ 0.22
CTDSP1-201ENST00000273062 TRIM11Q96F44 468 aa16.46■□□□□ 0.22
CTDSP1-201ENST00000273062 ZNF277Q9NRM2 450 aaPredicted RBP16.46■□□□□ 0.22
CTDSP1-201ENST00000273062 TUBA8Q9NY65 449 aaPredicted RBP16.46■□□□□ 0.22
CTDSP1-201ENST00000273062 DNAJB4Q9UDY4 337 aa16.46■□□□□ 0.22
CTDSP1-201ENST00000273062 CLDN3O15551 220 aa16.45■□□□□ 0.22
CTDSP1-201ENST00000273062 RBP3P10745 1247 aa16.45■□□□□ 0.22
CTDSP1-201ENST00000273062 RCVRNP35243 200 aa16.45■□□□□ 0.22
CTDSP1-201ENST00000273062 ECE1P42892 770 aa16.45■□□□□ 0.22
CTDSP1-201ENST00000273062 MARSP56192 900 aaKnown RBP16.45■□□□□ 0.22
CTDSP1-201ENST00000273062 IKQ13123 557 aaPredicted RBP16.45■□□□□ 0.22
CTDSP1-201ENST00000273062 KRT72Q14CN4 511 aa16.45■□□□□ 0.22
CTDSP1-201ENST00000273062 GRAMD1BQ3KR37 738 aa16.45■□□□□ 0.22
CTDSP1-201ENST00000273062 POTEAQ6S8J7 498 aa16.45■□□□□ 0.22
CTDSP1-201ENST00000273062 PIP4K2CQ8TBX8 421 aa16.45■□□□□ 0.22
CTDSP1-201ENST00000273062 SLC26A7Q8TE54 656 aa16.45■□□□□ 0.22
CTDSP1-201ENST00000273062 OXNAD1Q96HP4 312 aaPredicted RBP16.45■□□□□ 0.22
CTDSP1-201ENST00000273062 CEP63Q96MT8 703 aa16.45■□□□□ 0.22
CTDSP1-201ENST00000273062 FAM118BQ9BPY3 351 aa16.45■□□□□ 0.22
CTDSP1-201ENST00000273062 PLVAPQ9BX97 442 aa16.45■□□□□ 0.22
CTDSP1-201ENST00000273062 TRIM55Q9BYV6 548 aa16.45■□□□□ 0.22
CTDSP1-201ENST00000273062 FAM237BA0A1B0GVD1 139 aa16.45■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms