RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 RASGEF1CQ8N431 466 aa17.42■□□□□ 0.38
USP4-201ENST00000265560 ZNF560Q96MR9 790 aa17.42■□□□□ 0.38
USP4-201ENST00000265560 LHX5Q9H2C1 402 aa17.42■□□□□ 0.38
USP4-201ENST00000265560 RNF14Q9UBS8 474 aa17.42■□□□□ 0.38
USP4-201ENST00000265560 PCSK1NQ9UHG2 260 aa17.42■□□□□ 0.38
USP4-201ENST00000265560 TCRBV5S1A1TA0A578 114 aa17.42■□□□□ 0.38
USP4-201ENST00000265560 CDH5P33151 784 aaPredicted RBP17.42■□□□□ 0.38
USP4-201ENST00000265560 CCL23P55773 120 aa17.42■□□□□ 0.38
USP4-201ENST00000265560 RWDD2BP57060 319 aa17.42■□□□□ 0.38
USP4-201ENST00000265560 SNX1Q13596 522 aa17.42■□□□□ 0.38
USP4-201ENST00000265560 DSC3Q14574 896 aa17.42■□□□□ 0.38
USP4-201ENST00000265560 KIAA0319Q5VV43 1072 aa17.42■□□□□ 0.38
USP4-201ENST00000265560 LINC01599Q8WXQ3 324 aa17.42■□□□□ 0.38
USP4-201ENST00000265560 TMEM59LQ9UK28 342 aa17.42■□□□□ 0.38
USP4-201ENST00000265560 RAB21Q9UL25 225 aa17.42■□□□□ 0.38
USP4-201ENST00000265560 SCINQ9Y6U3 715 aa17.42■□□□□ 0.38
USP4-201ENST00000265560 A0A0U1RQG5 324 aaPredicted RBP17.41■□□□□ 0.38
USP4-201ENST00000265560 MIF4GDA9UHW6 222 aaKnown RBP17.41■□□□□ 0.38
USP4-201ENST00000265560 TTI1O43156 1089 aa17.41■□□□□ 0.38
USP4-201ENST00000265560 CARSP49589 748 aaKnown RBP17.41■□□□□ 0.38
USP4-201ENST00000265560 ARHGEF6Q15052 776 aa17.41■□□□□ 0.38
USP4-201ENST00000265560 SV2CQ496J9 727 aa17.41■□□□□ 0.38
USP4-201ENST00000265560 KAZNQ674X7 775 aa17.41■□□□□ 0.38
USP4-201ENST00000265560 LCLAT1Q6UWP7 414 aa17.41■□□□□ 0.38
USP4-201ENST00000265560 C1orf54Q8WWF1 131 aa17.41■□□□□ 0.38
USP4-201ENST00000265560 ATG4AQ8WYN0 398 aa17.41■□□□□ 0.38
USP4-201ENST00000265560 ZNF518BQ9C0D4 1074 aa17.41■□□□□ 0.38
USP4-201ENST00000265560 ZWILCHQ9H900 591 aa17.41■□□□□ 0.38
USP4-201ENST00000265560 PTPN22Q9Y2R2 807 aa17.41■□□□□ 0.38
USP4-201ENST00000265560 CCL5P13501 91 aa17.41■□□□□ 0.38
USP4-201ENST00000265560 LCP1P13796 627 aa17.41■□□□□ 0.38
USP4-201ENST00000265560 TTC3P53804 2025 aa17.41■□□□□ 0.38
USP4-201ENST00000265560 TIGD5Q53EQ6 642 aa17.41■□□□□ 0.38
USP4-201ENST00000265560 DSTYKQ6XUX3 929 aa17.41■□□□□ 0.38
USP4-201ENST00000265560 ZNF280BQ86YH2 543 aa17.41■□□□□ 0.38
USP4-201ENST00000265560 TRIM51Q9BSJ1 452 aa17.41■□□□□ 0.38
USP4-201ENST00000265560 PPP1R12CQ9BZL4 782 aa17.41■□□□□ 0.38
USP4-201ENST00000265560 STIM2Q9P246 746 aa17.41■□□□□ 0.38
USP4-201ENST00000265560 HCSTQ9UBK5 93 aa17.41■□□□□ 0.38
USP4-201ENST00000265560 BEST1O76090 585 aa17.41■□□□□ 0.38
USP4-201ENST00000265560 KRT10P13645 584 aa17.41■□□□□ 0.38
USP4-201ENST00000265560 PSMA2P25787 234 aa17.41■□□□□ 0.38
USP4-201ENST00000265560 GATMP50440 423 aa17.41■□□□□ 0.38
USP4-201ENST00000265560 FAM183BPQ6ZVS7 135 aa17.41■□□□□ 0.38
USP4-201ENST00000265560 HACE1Q8IYU2 909 aa17.41■□□□□ 0.38
USP4-201ENST00000265560 C3orf20Q8ND61 904 aa17.41■□□□□ 0.38
USP4-201ENST00000265560 DBF4BQ8NFT6 615 aa17.41■□□□□ 0.38
USP4-201ENST00000265560 RHOBTB2Q9BYZ6 727 aa17.41■□□□□ 0.38
USP4-201ENST00000265560 CCDC66A2RUB6 948 aa17.4■□□□□ 0.38
USP4-201ENST00000265560 CCDC151A5D8V7 595 aa17.4■□□□□ 0.38
USP4-201ENST00000265560 TNNT3P45378 269 aaPredicted RBP17.4■□□□□ 0.38
USP4-201ENST00000265560 ATP11AP98196 1134 aa17.4■□□□□ 0.38
USP4-201ENST00000265560 ADCY2Q08462 1091 aa17.4■□□□□ 0.38
USP4-201ENST00000265560 C15orf59Q2T9L4 293 aaPredicted RBP17.4■□□□□ 0.38
USP4-201ENST00000265560 BEND6Q5SZJ8 279 aaPredicted RBP17.4■□□□□ 0.38
USP4-201ENST00000265560 SEL1L2Q5TEA6 688 aa17.4■□□□□ 0.38
USP4-201ENST00000265560 CCDC70Q6NSX1 233 aa17.4■□□□□ 0.38
USP4-201ENST00000265560 CTU1Q7Z7A3 348 aaKnown RBP17.4■□□□□ 0.38
USP4-201ENST00000265560 ECHDC2Q86YB7 292 aa17.4■□□□□ 0.38
USP4-201ENST00000265560 GADD45GIP1Q8TAE8 222 aaPredicted RBP17.4■□□□□ 0.38
USP4-201ENST00000265560 DDX43Q9NXZ2 648 aaKnown RBP17.4■□□□□ 0.38
USP4-201ENST00000265560 NBNO60934 754 aa17.4■□□□□ 0.38
USP4-201ENST00000265560 PPP1R15BQ5SWA1 713 aa17.4■□□□□ 0.38
USP4-201ENST00000265560 TRNP1Q6NT89 227 aa17.4■□□□□ 0.38
USP4-201ENST00000265560 ARFGAP1Q8N6T3 406 aa17.4■□□□□ 0.38
USP4-201ENST00000265560 DDX27Q96GQ7 796 aaKnown RBP17.4■□□□□ 0.38
USP4-201ENST00000265560 TSEN34Q9BSV6 310 aaKnown RBP17.4■□□□□ 0.38
USP4-201ENST00000265560 DPH5Q9H2P9 285 aa17.4■□□□□ 0.38
USP4-201ENST00000265560 GDAP2Q9NXN4 497 aa17.4■□□□□ 0.38
USP4-201ENST00000265560 HESX1Q9UBX0 185 aa17.4■□□□□ 0.38
USP4-201ENST00000265560 NFU1Q9UMS0 254 aa17.4■□□□□ 0.38
USP4-201ENST00000265560 GIT1Q9Y2X7 761 aa17.4■□□□□ 0.38
USP4-201ENST00000265560 TDRD15B5MCY1 1934 aaKnown RBP17.39■□□□□ 0.38
USP4-201ENST00000265560 FLT3P36888 993 aa17.39■□□□□ 0.37
USP4-201ENST00000265560 BCAR1P56945 870 aa17.39■□□□□ 0.37
USP4-201ENST00000265560 MDH1BQ5I0G3 518 aa17.39■□□□□ 0.37
USP4-201ENST00000265560 PDE4DIPQ5VU43 2346 aa17.39■□□□□ 0.37
USP4-201ENST00000265560 RARAP10276 462 aa17.39■□□□□ 0.37
USP4-201ENST00000265560 ITIH3Q06033 890 aa17.39■□□□□ 0.37
USP4-201ENST00000265560 GPNMBQ14956 572 aa17.39■□□□□ 0.37
USP4-201ENST00000265560 UPP1Q16831 310 aa17.39■□□□□ 0.37
USP4-201ENST00000265560 TCTN1Q2MV58 587 aa17.39■□□□□ 0.37
USP4-201ENST00000265560 CCNI2Q6ZMN8 369 aaPredicted RBP17.39■□□□□ 0.37
USP4-201ENST00000265560 LRRC8DQ7L1W4 858 aa17.39■□□□□ 0.37
USP4-201ENST00000265560 MRPL10Q7Z7H8 261 aaKnown RBP17.39■□□□□ 0.37
USP4-201ENST00000265560 PRELID2Q8N945 189 aa17.39■□□□□ 0.37
USP4-201ENST00000265560 B3GALNT2Q8NCR0 500 aa17.39■□□□□ 0.37
USP4-201ENST00000265560 DIS3LQ8TF46 1054 aaKnown RBP17.39■□□□□ 0.37
USP4-201ENST00000265560 IP6K2Q9UHH9 426 aa17.39■□□□□ 0.37
USP4-201ENST00000265560 PHF24Q9UPV7 400 aa17.39■□□□□ 0.37
USP4-201ENST00000265560 SCN5AQ14524 2016 aa17.39■□□□□ 0.37
USP4-201ENST00000265560 MYBPHLA2RUH7 354 aa17.38■□□□□ 0.37
USP4-201ENST00000265560 CES2O00748 559 aa17.38■□□□□ 0.37
USP4-201ENST00000265560 ZRANB2O95218 330 aaKnown RBP eCLIP17.38■□□□□ 0.37
USP4-201ENST00000265560 RALAP11233 206 aa17.38■□□□□ 0.37
USP4-201ENST00000265560 LRPAP1P30533 357 aa17.38■□□□□ 0.37
USP4-201ENST00000265560 PNPLA4P41247 253 aa17.38■□□□□ 0.37
USP4-201ENST00000265560 SMC1AQ14683 1233 aaKnown RBP17.38■□□□□ 0.37
USP4-201ENST00000265560 DEFB128Q7Z7B8 93 aa17.38■□□□□ 0.37
USP4-201ENST00000265560 SLC13A5Q86YT5 568 aaPredicted RBP17.38■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms