RNA–Protein interactions for RNA: ENST00000263274.11

LIG1-201, Transcript of DNA ligase 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIG1, Length 3,384 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-201ENST00000263274 ACO1P21399 889 aaKnown RBP13.28□□□□□ -0.28
LIG1-201ENST00000263274 MAPK6Q16659 721 aa13.28□□□□□ -0.28
LIG1-201ENST00000263274 HADHQ16836 314 aaKnown RBP13.28□□□□□ -0.28
LIG1-201ENST00000263274 SLFN12LQ6IEE8 588 aa13.28□□□□□ -0.28
LIG1-201ENST00000263274 CAPRIN2Q6IMN6 1127 aaKnown RBP13.28□□□□□ -0.28
LIG1-201ENST00000263274 C1orf228Q6PIY5 440 aa13.28□□□□□ -0.28
LIG1-201ENST00000263274 PPM1NQ8N819 430 aa13.28□□□□□ -0.28
LIG1-201ENST00000263274 RFWD2Q8NHY2 731 aa13.28□□□□□ -0.28
LIG1-201ENST00000263274 INO80BQ9C086 356 aaPredicted RBP13.28□□□□□ -0.28
LIG1-201ENST00000263274 C17orf75Q9HAS0 396 aa13.28□□□□□ -0.28
LIG1-201ENST00000263274 SDAD1Q9NVU7 687 aaKnown RBP eCLIP13.28□□□□□ -0.28
LIG1-201ENST00000263274 MARCOQ9UEW3 520 aaPredicted RBP13.28□□□□□ -0.28
LIG1-201ENST00000263274 HEY1Q9Y5J3 304 aa13.28□□□□□ -0.28
LIG1-201ENST00000263274 TMEM191CA6NGB0 347 aa13.27□□□□□ -0.28
LIG1-201ENST00000263274 H0YCG3 227 aa13.27□□□□□ -0.28
LIG1-201ENST00000263274 EDF1O60869 148 aaKnown RBP13.27□□□□□ -0.28
LIG1-201ENST00000263274 MXRA7P84157 204 aa13.27□□□□□ -0.28
LIG1-201ENST00000263274 C1QBPQ07021 282 aaKnown RBP13.27□□□□□ -0.28
LIG1-201ENST00000263274 ZNF699Q32M78 642 aa13.27□□□□□ -0.28
LIG1-201ENST00000263274 MSS51Q4VC12 460 aa13.27□□□□□ -0.28
LIG1-201ENST00000263274 FNBP1LQ5T0N5 605 aa13.27□□□□□ -0.28
LIG1-201ENST00000263274 NBPF12Q5TAG4 269 aaPredicted RBP13.27□□□□□ -0.28
LIG1-201ENST00000263274 ATP11CQ8NB49 1132 aa13.27□□□□□ -0.28
LIG1-201ENST00000263274 FAM13CQ8NE31 585 aa13.27□□□□□ -0.28
LIG1-201ENST00000263274 JOSD2Q8TAC2 188 aa13.27□□□□□ -0.28
LIG1-201ENST00000263274 NLRP4Q96MN2 994 aa13.27□□□□□ -0.28
LIG1-201ENST00000263274 NTPCRQ9BSD7 190 aaKnown RBP13.27□□□□□ -0.28
LIG1-201ENST00000263274 FOCADQ5VW36 1801 aa13.27□□□□□ -0.29
LIG1-201ENST00000263274 TCRBV7S3A2A0A539 114 aa13.27□□□□□ -0.29
LIG1-201ENST00000263274 PLA2G6O60733 806 aa13.27□□□□□ -0.29
LIG1-201ENST00000263274 RBP3P10745 1247 aa13.27□□□□□ -0.29
LIG1-201ENST00000263274 EIF3EP60228 445 aaKnown RBP13.27□□□□□ -0.29
LIG1-201ENST00000263274 MORF4L2Q15014 288 aa13.27□□□□□ -0.29
LIG1-201ENST00000263274 TAF5Q15542 800 aa13.27□□□□□ -0.29
LIG1-201ENST00000263274 WDR72Q3MJ13 1102 aa13.27□□□□□ -0.29
LIG1-201ENST00000263274 RIBC1Q8N443 379 aaPredicted RBP13.27□□□□□ -0.29
LIG1-201ENST00000263274 WRNIP1Q96S55 665 aa13.27□□□□□ -0.29
LIG1-201ENST00000263274 TRIM55Q9BYV6 548 aa13.27□□□□□ -0.29
LIG1-201ENST00000263274 MYOZ2Q9NPC6 264 aa13.27□□□□□ -0.29
LIG1-201ENST00000263274 FBXO6Q9NRD1 293 aaPredicted RBP13.27□□□□□ -0.29
LIG1-201ENST00000263274 ARHGAP28Q9P2N2 729 aa13.27□□□□□ -0.29
LIG1-201ENST00000263274 STARD13Q9Y3M8 1113 aa13.27□□□□□ -0.29
LIG1-201ENST00000263274 hCG_1818297A0A087WSY0 165 aa13.26□□□□□ -0.29
LIG1-201ENST00000263274 GYG2O15488 501 aa13.26□□□□□ -0.29
LIG1-201ENST00000263274 RNF8O76064 485 aa13.26□□□□□ -0.29
LIG1-201ENST00000263274 LDHAP00338 332 aaKnown RBP13.26□□□□□ -0.29
LIG1-201ENST00000263274 MMP8P22894 467 aa13.26□□□□□ -0.29
LIG1-201ENST00000263274 ARFIP2P53365 341 aa13.26□□□□□ -0.29
LIG1-201ENST00000263274 CNTN2Q02246 1040 aa13.26□□□□□ -0.29
LIG1-201ENST00000263274 PDK4Q16654 411 aa13.26□□□□□ -0.29
LIG1-201ENST00000263274 TLDC1Q6P9B6 456 aa13.26□□□□□ -0.29
LIG1-201ENST00000263274 NPNTQ6UXI9 565 aa13.26□□□□□ -0.29
LIG1-201ENST00000263274 UNC45BQ8IWX7 931 aa13.26□□□□□ -0.29
LIG1-201ENST00000263274 ANKLE1Q8NAG6 615 aa13.26□□□□□ -0.29
LIG1-201ENST00000263274 RNF149Q8NC42 400 aa13.26□□□□□ -0.29
LIG1-201ENST00000263274 UTP4Q969X6 686 aaKnown RBP13.26□□□□□ -0.29
LIG1-201ENST00000263274 ARMCX1Q9P291 453 aa13.26□□□□□ -0.29
LIG1-201ENST00000263274 POLIQ9UNA4 740 aa13.26□□□□□ -0.29
LIG1-201ENST00000263274 AVILO75366 819 aa13.26□□□□□ -0.29
LIG1-201ENST00000263274 HAUS5O94927 633 aa13.26□□□□□ -0.29
LIG1-201ENST00000263274 KCNA2P16389 499 aa13.26□□□□□ -0.29
LIG1-201ENST00000263274 GCAP28676 217 aa13.26□□□□□ -0.29
LIG1-201ENST00000263274 ZNF568Q3ZCX4 644 aa13.26□□□□□ -0.29
LIG1-201ENST00000263274 THEMIS2Q5TEJ8 643 aa13.26□□□□□ -0.29
LIG1-201ENST00000263274 PHF13Q86YI8 300 aaPredicted RBP13.26□□□□□ -0.29
LIG1-201ENST00000263274 AGGF1Q8N302 714 aaeCLIP13.26□□□□□ -0.29
LIG1-201ENST00000263274 TFAP2BQ92481 460 aa13.26□□□□□ -0.29
LIG1-201ENST00000263274 GPRASP2Q96D09 838 aa13.26□□□□□ -0.29
LIG1-201ENST00000263274 NAF1Q96HR8 494 aaKnown RBP13.26□□□□□ -0.29
LIG1-201ENST00000263274 TSSK1BQ9BXA7 367 aa13.26□□□□□ -0.29
LIG1-201ENST00000263274 OSBPL1AQ9BXW6 950 aa13.26□□□□□ -0.29
LIG1-201ENST00000263274 MANSC1Q9H8J5 431 aa13.26□□□□□ -0.29
LIG1-201ENST00000263274 MAD1L1Q9Y6D9 718 aa13.26□□□□□ -0.29
LIG1-201ENST00000263274 KIF13BQ9NQT8 1826 aa13.26□□□□□ -0.29
LIG1-201ENST00000263274 MCF2LO15068 1137 aa13.26□□□□□ -0.29
LIG1-201ENST00000263274 BGNP21810 368 aa13.26□□□□□ -0.29
LIG1-201ENST00000263274 RPL22P35268 128 aaKnown RBP13.26□□□□□ -0.29
LIG1-201ENST00000263274 FSTL1Q12841 308 aa13.26□□□□□ -0.29
LIG1-201ENST00000263274 SPATA18Q8TC71 538 aa13.26□□□□□ -0.29
LIG1-201ENST00000263274 CGRRF1Q99675 332 aa13.26□□□□□ -0.29
LIG1-201ENST00000263274 ETAA1Q9NY74 926 aa13.26□□□□□ -0.29
LIG1-201ENST00000263274 ALOX15BO15296 676 aa13.25□□□□□ -0.29
LIG1-201ENST00000263274 ATP5HO75947 161 aa13.25□□□□□ -0.29
LIG1-201ENST00000263274 GJB1P08034 283 aa13.25□□□□□ -0.29
LIG1-201ENST00000263274 ESRRAP11474 423 aaPredicted RBP13.25□□□□□ -0.29
LIG1-201ENST00000263274 GPX6P59796 221 aa13.25□□□□□ -0.29
LIG1-201ENST00000263274 IGBP1P78318 339 aa13.25□□□□□ -0.29
LIG1-201ENST00000263274 SP2Q02086 613 aa13.25□□□□□ -0.29
LIG1-201ENST00000263274 MMRN1Q13201 1228 aa13.25□□□□□ -0.29
LIG1-201ENST00000263274 PTK7Q13308 1070 aa13.25□□□□□ -0.29
LIG1-201ENST00000263274 RNASEH2BQ5TBB1 312 aaKnown RBP13.25□□□□□ -0.29
LIG1-201ENST00000263274 DENND1BQ6P3S1 775 aa13.25□□□□□ -0.29
LIG1-201ENST00000263274 CCDC62Q6P9F0 684 aa13.25□□□□□ -0.29
LIG1-201ENST00000263274 ARMCX6Q7L4S7 300 aa13.25□□□□□ -0.29
LIG1-201ENST00000263274 UBA3Q8TBC4 463 aa13.25□□□□□ -0.29
LIG1-201ENST00000263274 PRPF31Q8WWY3 499 aaKnown RBP13.25□□□□□ -0.29
LIG1-201ENST00000263274 FAF2Q96CS3 445 aa13.25□□□□□ -0.29
LIG1-201ENST00000263274 TCEA3O75764 348 aa13.25□□□□□ -0.29
LIG1-201ENST00000263274 RGS20O76081 388 aa13.25□□□□□ -0.29
LIG1-201ENST00000263274 SUPT20HL2P0C7V6 817 aa13.25□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms